Wall clock time and date at job start Mon Mar 30 2020 04:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48495 * 109.47049 * 240.00429 * 3 2 1 5 5 H 1.48501 * 109.46837 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46981 * 119.99962 * 3 2 1 7 7 C 1.37885 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47284 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47368 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47313 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99805 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00101 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99805 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47248 * 180.02562 * 15 14 12 17 17 C 1.52993 * 109.47398 * 179.97438 * 16 15 14 18 18 C 1.53120 * 109.52343 * 184.99571 * 17 16 15 19 19 C 1.53042 * 109.27821 * 182.43872 * 18 17 16 20 20 N 1.46848 * 109.52160 * 59.18425 * 19 18 17 21 21 C 1.46847 * 111.19556 * 298.25623 * 20 19 18 22 22 C 1.53034 * 109.52616 * 61.74332 * 21 20 19 23 23 H 0.97005 * 120.00257 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47210 * 60.00006 * 9 7 2 25 25 H 1.08998 * 109.47096 * 300.00235 * 9 7 2 26 26 H 1.09005 * 109.46942 * 59.99903 * 10 9 7 27 27 H 1.08997 * 109.46836 * 300.00443 * 10 9 7 28 28 H 1.08993 * 109.47450 * 59.99675 * 11 10 9 29 29 H 1.09008 * 109.46741 * 299.99802 * 11 10 9 30 30 H 0.96996 * 119.99941 * 0.02562 * 14 12 11 31 31 H 1.08993 * 109.47437 * 59.99757 * 15 14 12 32 32 H 1.08998 * 109.47055 * 299.99666 * 15 14 12 33 33 H 1.09003 * 109.47427 * 59.99269 * 16 15 14 34 34 H 1.09008 * 109.46614 * 299.99668 * 16 15 14 35 35 H 1.08996 * 109.57542 * 305.15898 * 17 16 15 36 36 H 1.08997 * 109.49895 * 62.50324 * 18 17 16 37 37 H 1.08998 * 109.50437 * 302.38327 * 18 17 16 38 38 H 1.08995 * 109.46577 * 299.16647 * 19 18 17 39 39 H 1.08994 * 109.45929 * 179.19867 * 19 18 17 40 40 H 1.00901 * 111.00066 * 62.35005 * 20 19 18 41 41 H 1.09000 * 109.46087 * 181.75730 * 21 20 19 42 42 H 1.09004 * 109.46240 * 301.72671 * 21 20 19 43 43 H 1.08998 * 109.50577 * 180.88107 * 22 21 20 44 44 H 1.09000 * 109.50061 * 60.76065 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 6 2.4595 -6.1326 -0.0044 13 8 3.6519 -5.9110 -0.0047 14 7 2.0102 -7.4033 -0.0047 15 6 2.9622 -8.5167 -0.0060 16 6 2.1973 -9.8418 -0.0068 17 6 3.1914 -11.0047 -0.0087 18 6 2.4311 -12.3277 -0.1352 19 6 3.4254 -13.4896 -0.0754 20 7 4.1569 -13.4445 1.1971 21 6 4.9324 -12.2036 1.3201 22 6 3.9831 -11.0034 1.3019 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8726 -3.6048 0.8877 27 1 2.8712 -3.6039 -0.8922 28 1 0.8532 -5.0442 -0.8921 29 1 0.8540 -5.0455 0.8878 30 1 1.0566 -7.5805 -0.0041 31 1 3.5896 -8.4595 0.8835 32 1 3.5882 -8.4585 -0.8964 33 1 1.5701 -9.8988 -0.8965 34 1 1.5710 -9.9002 0.8835 35 1 3.8776 -10.8971 -0.8488 36 1 1.8995 -12.3524 -1.0864 37 1 1.7174 -12.4170 0.6837 38 1 4.1303 -13.4074 -0.9026 39 1 2.8858 -14.4336 -0.1509 40 1 3.5294 -13.5578 1.9791 41 1 5.4872 -12.2136 2.2582 42 1 5.6303 -12.1273 0.4862 43 1 4.5602 -10.0818 1.3775 44 1 3.2938 -11.0718 2.1435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594453983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:55 Heat of formation + Delta-G solvation = -104.234097 kcal Electronic energy + Delta-G solvation = -19817.155236 eV Core-core repulsion = 16766.338811 eV Total energy + Delta-G solvation = -3050.816426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83691 -39.93032 -36.68392 -36.04576 -34.20479 -33.88201 -31.78138 -30.41951 -29.01852 -26.08175 -24.78474 -23.77734 -22.48911 -22.22280 -21.35187 -20.86382 -18.60435 -17.74129 -17.28095 -16.97110 -16.59679 -16.48115 -15.90992 -15.57456 -15.25589 -15.13098 -14.89568 -14.56611 -14.24671 -14.01794 -13.77473 -13.24754 -13.13863 -13.01448 -12.72934 -12.61050 -12.51826 -12.43119 -12.22748 -12.12863 -12.10145 -11.56363 -11.47454 -11.44771 -11.28547 -11.14622 -10.76442 -10.54677 -10.09190 -9.27985 -8.20683 -6.30714 1.39054 1.42090 1.50185 1.64807 2.22012 2.41759 3.11999 3.41445 3.66815 3.72114 3.86956 4.00303 4.13741 4.20684 4.22042 4.26754 4.32356 4.46412 4.49626 4.55343 4.63036 4.78213 4.87295 4.88531 4.96573 4.98854 5.03105 5.07103 5.10402 5.12987 5.16706 5.18668 5.26056 5.45525 5.46650 5.54182 5.74761 5.86198 6.10537 6.26994 6.50504 6.56362 6.84375 7.27812 7.37726 8.90550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061418 B = 0.002305 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.781727 B =12143.605160 C =12426.462590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.720 5.720 15 C 0.117 3.883 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.145 4.145 19 C 0.055 3.945 20 N -0.696 5.696 21 C 0.057 3.943 22 C -0.153 4.153 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.417 0.583 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.346 0.654 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -29.029 0.972 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.373 5.373 15 C -0.006 4.006 16 C -0.150 4.150 17 C -0.101 4.101 18 C -0.184 4.184 19 C -0.074 4.074 20 N -0.325 5.325 21 C -0.073 4.073 22 C -0.193 4.193 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.164 0.836 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.191 -29.173 0.736 29.356 hybrid contribution -0.697 1.793 0.140 1.929 sum 2.495 -27.380 0.876 27.507 Atomic orbital electron populations 1.70055 1.07470 1.27867 1.51463 1.25922 0.95870 1.03099 0.94690 0.85546 0.78384 0.78348 0.79051 1.19442 1.20305 1.19445 1.21667 0.93327 0.92846 1.50876 0.93109 1.19019 0.94192 0.92350 0.95553 1.21164 0.97650 0.93123 1.00201 1.21680 0.97905 0.91649 1.05773 1.21105 0.89361 0.85037 0.74429 1.90663 1.19182 1.85609 1.51338 1.45943 1.11390 1.04763 1.75186 1.21425 0.92264 0.85767 1.01163 1.21761 0.98154 0.91339 1.03792 1.21083 0.96751 0.94346 0.97919 1.22244 0.98578 0.94414 1.03146 1.22051 0.95282 0.97995 0.92110 1.60652 1.30499 1.36141 1.05184 1.21995 0.95753 0.87086 1.02431 1.22352 0.99354 0.99816 0.97730 0.92637 0.98033 0.98021 0.94197 0.94214 0.87329 0.87318 0.74631 0.92664 0.93126 0.89990 0.90283 0.91475 0.90550 0.91360 0.91539 0.89781 0.83621 0.90449 0.91580 0.92068 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.71 4.44 30.59 0.14 -3.58 16 11 C -0.13 -4.23 5.70 29.85 0.17 -4.06 16 12 C 0.51 16.37 7.83 87.66 0.69 17.05 16 13 O -0.59 -24.38 15.98 -3.05 -0.05 -24.43 16 14 N -0.72 -15.65 5.56 -463.07 -2.57 -18.22 16 15 C 0.12 2.30 5.44 86.38 0.47 2.77 16 16 C -0.11 -1.34 4.80 30.59 0.15 -1.19 16 17 C -0.08 -0.94 2.25 -10.71 -0.02 -0.97 16 18 C -0.14 -1.29 5.36 30.65 0.16 -1.12 16 19 C 0.06 0.55 6.55 86.33 0.57 1.12 16 20 N -0.70 -8.19 6.87 -514.01 -3.53 -11.72 16 21 C 0.06 0.71 6.55 86.32 0.57 1.28 16 22 C -0.15 -1.91 5.06 30.65 0.16 -1.76 16 23 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 24 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 27 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 28 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 30 H 0.42 6.15 8.47 -92.71 -0.79 5.36 16 31 H 0.06 1.23 6.64 -2.39 -0.02 1.22 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.35 3.32 8.86 -89.69 -0.79 2.52 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.06 0.93 6.71 -2.39 -0.02 0.91 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -72.53 351.14 -0.57 -73.10 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.61 Total: 10.82 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 3.88 Total: -20.73 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -5.82 Total: -86.25 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.53 -0.57 -73.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594453983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.134 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds