Wall clock time and date at job start Mon Mar 30 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 C 1.53007 * 109.47169 * 60.00190 * 3 2 1 5 5 C 1.53000 * 109.47209 * 300.00175 * 3 2 1 6 6 N 1.46900 * 109.47482 * 180.02562 * 3 2 1 7 7 C 1.46898 * 111.00291 * 183.17346 * 6 3 2 8 8 H 1.08996 * 109.47072 * 336.35752 * 7 6 3 9 9 C 1.53001 * 109.47176 * 96.35349 * 7 6 3 10 10 C 1.50695 * 109.47265 * 216.35322 * 7 6 3 11 11 O 1.21277 * 119.99958 * 0.02562 * 10 7 6 12 12 N 1.34776 * 120.00240 * 179.97438 * 10 7 6 13 13 C 1.47582 * 134.49617 * 180.02562 * 12 10 7 14 14 C 1.53941 * 86.11859 * 155.36204 * 13 12 10 15 15 C 1.50695 * 113.74253 * 137.95812 * 14 13 12 16 16 H 1.07997 * 120.00008 * 1.63920 * 15 14 13 17 17 C 1.37883 * 119.99945 * 181.92360 * 15 14 13 18 18 N 1.31510 * 119.99780 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00073 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47154 * 89.99781 * 19 17 15 21 21 H 1.48492 * 109.47226 * 209.99982 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00370 * 19 17 15 23 23 C 1.47816 * 134.45450 * 359.87000 * 12 10 7 24 24 H 1.08999 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46941 * 299.99725 * 1 2 3 26 26 H 1.08997 * 109.47218 * 60.00125 * 1 2 3 27 27 H 1.08996 * 109.47255 * 240.00205 * 2 1 3 28 28 H 1.09005 * 109.47417 * 120.00155 * 2 1 3 29 29 H 1.09000 * 109.46966 * 176.46870 * 4 3 2 30 30 H 1.09001 * 109.46629 * 296.47204 * 4 3 2 31 31 H 1.08994 * 109.47147 * 56.46972 * 4 3 2 32 32 H 1.09001 * 109.47289 * 296.48009 * 5 3 2 33 33 H 1.09002 * 109.46879 * 56.47800 * 5 3 2 34 34 H 1.09003 * 109.47352 * 176.47856 * 5 3 2 35 35 H 1.00896 * 111.00280 * 59.21606 * 6 3 2 36 36 H 1.09001 * 109.47100 * 52.91379 * 9 7 6 37 37 H 1.09007 * 109.47273 * 172.91156 * 9 7 6 38 38 H 1.09001 * 109.47433 * 292.91435 * 9 7 6 39 39 H 1.08997 * 113.76783 * 41.05444 * 13 12 10 40 40 H 1.08999 * 113.76820 * 269.66377 * 13 12 10 41 41 H 1.09007 * 113.74093 * 269.15261 * 14 13 12 42 42 H 0.97000 * 120.00082 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.76698 * 90.37911 * 23 12 10 44 44 H 1.08994 * 113.83612 * 318.91979 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 7 3.5090 1.4425 -0.0006 7 6 4.0355 2.8118 0.0753 8 1 3.2867 3.5102 -0.2983 9 6 4.3679 3.1505 1.5298 10 6 5.2834 2.9174 -0.7628 11 8 5.6935 1.9476 -1.3646 12 7 5.9431 4.0898 -0.8446 13 6 7.1583 4.5460 -1.5469 14 6 6.5464 5.9565 -1.4703 15 6 7.5409 7.0308 -1.1130 16 1 8.5800 6.7768 -0.9643 17 6 7.1232 8.3371 -0.9703 18 7 7.9911 9.2745 -0.6580 19 14 5.3247 8.7752 -1.2205 20 1 4.6036 8.6645 0.0730 21 1 5.2202 10.1668 -1.7279 22 1 4.7203 7.8424 -2.2054 23 6 5.7378 5.4355 -0.2686 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9442 3.1715 1.2815 30 1 0.4418 2.2188 1.2182 31 1 1.8408 1.6147 2.1381 32 1 1.9439 1.6877 -2.1381 33 1 0.4418 2.1094 -1.2813 34 1 1.8409 3.2080 -1.2182 35 1 3.8703 0.9606 -0.8101 36 1 5.0195 2.3802 1.9425 37 1 4.8739 4.1151 1.5718 38 1 3.4473 3.1975 2.1115 39 1 7.2493 4.1611 -2.5626 40 1 8.0720 4.4313 -0.9637 41 1 5.9323 6.2159 -2.3328 42 1 7.6974 10.1935 -0.5579 43 1 6.2331 5.5828 0.6911 44 1 4.6971 5.7593 -0.2657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:39 Heat of formation + Delta-G solvation = -6.678021 kcal Electronic energy + Delta-G solvation = -21604.025797 eV Core-core repulsion = 18557.439720 eV Total energy + Delta-G solvation = -3046.586077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10089 -38.67013 -37.07024 -33.92495 -32.67344 -30.58897 -29.29232 -28.78438 -27.35829 -25.58052 -25.29866 -24.35912 -22.50548 -19.84003 -18.95805 -18.50895 -17.22154 -17.04479 -16.08250 -15.58780 -15.00608 -14.90812 -14.40597 -14.24874 -13.90018 -13.43518 -13.22202 -12.98824 -12.82025 -12.54884 -12.46030 -12.26351 -12.03226 -11.97555 -11.79578 -11.58609 -11.33039 -11.25547 -11.18564 -10.98467 -10.80113 -10.73280 -10.51695 -10.09947 -9.85325 -9.43210 -9.10542 -8.72432 -8.45935 -8.09204 -6.24290 -4.27224 2.96740 3.15154 3.24185 3.25904 3.35048 4.07737 4.26091 4.61536 4.74329 4.76347 4.99948 5.00050 5.11429 5.19488 5.28487 5.33460 5.37145 5.49384 5.52811 5.66652 5.69312 5.77537 5.84260 5.85097 5.89890 5.93527 5.96698 5.97737 6.07033 6.12726 6.18893 6.23680 6.25466 6.32001 6.38729 6.49067 7.04789 7.13410 7.44555 7.50320 8.23739 8.34788 8.55080 8.79321 9.35960 10.87897 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004617 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.118113 B = 6063.188526 C = 6524.266414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C 0.108 3.892 4 C -0.146 4.146 5 C -0.187 4.187 6 N -0.664 5.664 7 C 0.068 3.932 8 H 0.075 0.925 9 C -0.143 4.143 10 C 0.522 3.478 11 O -0.559 6.559 12 N -0.636 5.636 13 C 0.118 3.882 14 C -0.012 4.012 15 C -0.514 4.514 16 H 0.080 0.920 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.871 3.129 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.263 1.263 23 C 0.087 3.913 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.356 0.644 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.267 0.733 43 H 0.089 0.911 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -12.447 3.006 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C 0.017 3.983 4 C -0.204 4.204 5 C -0.245 4.245 6 N -0.300 5.300 7 C -0.045 4.045 8 H 0.093 0.907 9 C -0.201 4.201 10 C 0.310 3.690 11 O -0.439 6.439 12 N -0.369 5.369 13 C -0.003 4.003 14 C -0.031 4.031 15 C -0.552 4.552 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.698 3.302 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.188 1.188 23 C -0.036 4.036 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.358 -13.047 3.404 19.697 hybrid contribution -1.103 0.762 -0.928 1.631 sum -15.461 -12.285 2.476 19.902 Atomic orbital electron populations 1.21893 0.95691 1.01532 1.02035 1.21468 0.95419 0.95146 1.02589 1.20999 0.87334 0.95508 0.94478 1.22128 1.00397 1.00540 0.97307 1.22660 1.02123 1.01105 0.98647 1.60738 1.05965 1.14057 1.49255 1.21415 0.94374 0.91918 0.96753 0.90700 1.22013 1.02537 1.01855 0.93736 1.20404 0.85724 0.81432 0.81408 1.90610 1.69257 1.36197 1.47796 1.50357 1.28032 1.09343 1.49214 1.23276 0.87752 0.93219 0.96095 1.21057 0.95456 0.92802 0.93814 1.20833 0.95617 0.90569 1.48176 0.90167 1.24992 0.97360 0.96254 0.93992 1.69887 1.34350 1.01519 1.47125 0.86922 0.85833 0.78175 0.79242 1.19860 1.21122 1.18800 1.24061 1.00139 0.78223 1.01143 0.92811 0.92351 0.92544 0.92121 0.91084 0.92008 0.92287 0.91755 0.92547 0.91603 0.92510 0.82091 0.91648 0.91738 0.91268 0.91670 0.90033 0.92002 0.92331 0.89260 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.21 37.15 0.34 -0.86 16 2 C -0.11 -1.04 5.28 -26.74 -0.14 -1.18 16 3 C 0.11 1.18 0.72 -131.60 -0.09 1.08 16 4 C -0.15 -1.45 6.82 37.16 0.25 -1.20 16 5 C -0.19 -2.03 8.06 37.16 0.30 -1.73 16 6 N -0.66 -9.08 5.92 -94.25 -0.56 -9.63 16 7 C 0.07 1.01 2.10 -68.87 -0.14 0.86 16 8 H 0.08 1.07 5.19 -51.93 -0.27 0.80 16 9 C -0.14 -1.93 9.01 37.16 0.33 -1.60 16 10 C 0.52 9.66 7.43 -10.99 -0.08 9.58 16 11 O -0.56 -11.82 16.18 5.56 0.09 -11.73 16 12 N -0.64 -12.06 3.56 -178.24 -0.64 -12.70 16 13 C 0.12 2.34 8.39 -2.97 -0.02 2.32 16 14 C -0.01 -0.25 2.90 -90.86 -0.26 -0.52 16 15 C -0.51 -13.13 9.33 -34.44 -0.32 -13.45 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 17 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.89 -25.46 13.96 55.43 0.77 -24.68 16 19 Si 0.87 19.59 26.96 -169.99 -4.58 15.01 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -5.68 6.29 56.52 0.36 -5.32 16 23 C 0.09 1.64 5.62 -2.85 -0.02 1.62 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.43 6.51 -51.92 -0.34 0.09 16 26 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.65 5.18 -51.93 -0.27 0.38 16 30 H 0.06 0.50 6.62 -51.93 -0.34 0.16 16 31 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.61 6.25 -51.93 -0.32 0.28 16 34 H 0.06 0.67 6.27 -51.93 -0.33 0.34 16 35 H 0.36 5.42 7.09 -39.29 -0.28 5.14 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.90 5.93 -51.93 -0.31 0.59 16 38 H 0.07 0.80 5.45 -51.93 -0.28 0.52 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.06 1.36 6.70 -51.92 -0.35 1.01 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.09 1.67 7.83 -51.93 -0.41 1.27 16 44 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -28.48 332.18 -7.08 -35.56 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.22 Total: 6.29 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 0.05 Total: -3.12 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.42 Total: -47.02 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.58 Total: 15.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.48 -7.08 -35.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.883 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds