Wall clock time and date at job start Mon Mar 30 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 C 1.53007 * 109.47169 * 60.00190 * 3 2 1 5 5 C 1.53000 * 109.47209 * 300.00175 * 3 2 1 6 6 N 1.46900 * 109.47482 * 180.02562 * 3 2 1 7 7 C 1.46898 * 111.00291 * 183.17346 * 6 3 2 8 8 H 1.08996 * 109.47072 * 336.35752 * 7 6 3 9 9 C 1.53001 * 109.47176 * 96.35349 * 7 6 3 10 10 C 1.50695 * 109.47265 * 216.35322 * 7 6 3 11 11 O 1.21277 * 119.99958 * 0.02562 * 10 7 6 12 12 N 1.34776 * 120.00240 * 179.97438 * 10 7 6 13 13 C 1.47582 * 134.49617 * 180.02562 * 12 10 7 14 14 C 1.53941 * 86.11859 * 155.36204 * 13 12 10 15 15 C 1.50695 * 113.74253 * 137.95812 * 14 13 12 16 16 H 1.07997 * 120.00008 * 1.63920 * 15 14 13 17 17 C 1.37883 * 119.99945 * 181.92360 * 15 14 13 18 18 N 1.31510 * 119.99780 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00073 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47154 * 89.99781 * 19 17 15 21 21 H 1.48492 * 109.47226 * 209.99982 * 19 17 15 22 22 H 1.48503 * 109.46954 * 330.00370 * 19 17 15 23 23 C 1.47816 * 134.45450 * 359.87000 * 12 10 7 24 24 H 1.08999 * 109.47467 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46941 * 299.99725 * 1 2 3 26 26 H 1.08997 * 109.47218 * 60.00125 * 1 2 3 27 27 H 1.08996 * 109.47255 * 240.00205 * 2 1 3 28 28 H 1.09005 * 109.47417 * 120.00155 * 2 1 3 29 29 H 1.09000 * 109.46966 * 176.46870 * 4 3 2 30 30 H 1.09001 * 109.46629 * 296.47204 * 4 3 2 31 31 H 1.08994 * 109.47147 * 56.46972 * 4 3 2 32 32 H 1.09001 * 109.47289 * 296.48009 * 5 3 2 33 33 H 1.09002 * 109.46879 * 56.47800 * 5 3 2 34 34 H 1.09003 * 109.47352 * 176.47856 * 5 3 2 35 35 H 1.00896 * 111.00280 * 59.21606 * 6 3 2 36 36 H 1.09001 * 109.47100 * 52.91379 * 9 7 6 37 37 H 1.09007 * 109.47273 * 172.91156 * 9 7 6 38 38 H 1.09001 * 109.47433 * 292.91435 * 9 7 6 39 39 H 1.08997 * 113.76783 * 41.05444 * 13 12 10 40 40 H 1.08999 * 113.76820 * 269.66377 * 13 12 10 41 41 H 1.09007 * 113.74093 * 269.15261 * 14 13 12 42 42 H 0.97000 * 120.00082 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.76698 * 90.37911 * 23 12 10 44 44 H 1.08994 * 113.83612 * 318.91979 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2492 6 7 3.5090 1.4425 -0.0006 7 6 4.0355 2.8118 0.0753 8 1 3.2867 3.5102 -0.2983 9 6 4.3679 3.1505 1.5298 10 6 5.2834 2.9174 -0.7628 11 8 5.6935 1.9476 -1.3646 12 7 5.9431 4.0898 -0.8446 13 6 7.1583 4.5460 -1.5469 14 6 6.5464 5.9565 -1.4703 15 6 7.5409 7.0308 -1.1130 16 1 8.5800 6.7768 -0.9643 17 6 7.1232 8.3371 -0.9703 18 7 7.9911 9.2745 -0.6580 19 14 5.3247 8.7752 -1.2205 20 1 4.6036 8.6645 0.0730 21 1 5.2202 10.1668 -1.7279 22 1 4.7203 7.8424 -2.2054 23 6 5.7378 5.4355 -0.2686 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9442 3.1715 1.2815 30 1 0.4418 2.2188 1.2182 31 1 1.8408 1.6147 2.1381 32 1 1.9439 1.6877 -2.1381 33 1 0.4418 2.1094 -1.2813 34 1 1.8409 3.2080 -1.2182 35 1 3.8703 0.9606 -0.8101 36 1 5.0195 2.3802 1.9425 37 1 4.8739 4.1151 1.5718 38 1 3.4473 3.1975 2.1115 39 1 7.2493 4.1611 -2.5626 40 1 8.0720 4.4313 -0.9637 41 1 5.9323 6.2159 -2.3328 42 1 7.6974 10.1935 -0.5579 43 1 6.2331 5.5828 0.6911 44 1 4.6971 5.7593 -0.2657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:39 Heat of formation + Delta-G solvation = -25.384210 kcal Electronic energy + Delta-G solvation = -21604.836958 eV Core-core repulsion = 18557.439720 eV Total energy + Delta-G solvation = -3047.397238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48650 -39.84531 -38.51842 -35.00034 -34.62237 -31.81911 -30.56438 -29.74607 -28.25889 -27.19840 -26.94950 -25.25748 -23.70623 -21.45118 -19.96877 -19.81872 -19.11346 -18.33203 -17.42832 -16.93955 -16.42084 -16.02083 -15.66788 -15.29647 -15.09571 -14.97205 -14.65013 -14.18363 -14.04284 -13.70481 -13.64147 -13.45349 -13.21693 -13.08639 -12.91249 -12.76645 -12.69206 -12.49517 -12.23952 -12.11119 -12.01792 -11.82896 -11.59629 -11.52354 -11.33115 -11.30668 -10.78500 -10.58926 -9.68007 -9.46971 -8.27124 -6.35322 1.40279 1.44197 1.51076 1.52707 1.87705 2.38256 3.04086 3.04530 3.38860 3.80637 3.94546 4.01268 4.06589 4.18469 4.24835 4.32122 4.44409 4.45017 4.49764 4.56463 4.60257 4.67007 4.67918 4.72942 4.74798 4.82313 4.91155 4.94153 4.98876 5.06032 5.16014 5.19167 5.22283 5.33212 5.38499 5.47663 5.50962 5.59987 6.04770 6.27592 6.33280 6.69271 6.80225 7.05480 7.31903 8.88629 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.004617 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.118113 B = 6063.188526 C = 6524.266414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C 0.105 3.895 4 C -0.145 4.145 5 C -0.184 4.184 6 N -0.670 5.670 7 C 0.077 3.923 8 H 0.087 0.913 9 C -0.139 4.139 10 C 0.517 3.483 11 O -0.588 6.588 12 N -0.636 5.636 13 C 0.117 3.883 14 C -0.016 4.016 15 C -0.516 4.516 16 H 0.040 0.960 17 C 0.022 3.978 18 N -0.945 5.945 19 Si 0.935 3.065 20 H -0.252 1.252 21 H -0.292 1.292 22 H -0.244 1.244 23 C 0.100 3.900 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.345 0.655 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.268 0.732 43 H 0.090 0.910 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.919 -13.054 3.600 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C 0.014 3.986 4 C -0.202 4.202 5 C -0.243 4.243 6 N -0.305 5.305 7 C -0.035 4.035 8 H 0.105 0.895 9 C -0.197 4.197 10 C 0.308 3.692 11 O -0.470 6.470 12 N -0.369 5.369 13 C -0.005 4.005 14 C -0.036 4.036 15 C -0.554 4.554 16 H 0.058 0.942 17 C -0.177 4.177 18 N -0.584 5.584 19 Si 0.758 3.242 20 H -0.176 1.176 21 H -0.218 1.218 22 H -0.168 1.168 23 C -0.022 4.022 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.167 0.833 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.722 -13.679 4.013 22.744 hybrid contribution 0.045 0.871 -1.143 1.438 sum -17.677 -12.808 2.870 22.017 Atomic orbital electron populations 1.21867 0.94017 1.02305 1.02536 1.21451 0.96791 0.94124 1.02027 1.21160 0.85625 0.96589 0.95215 1.22126 1.01575 1.00013 0.96510 1.22635 1.03311 1.00297 0.98022 1.60836 1.07804 1.13148 1.48669 1.21430 0.92506 0.92982 0.96626 0.89528 1.22011 1.03493 1.01208 0.92979 1.21132 0.86479 0.80525 0.81091 1.90595 1.70278 1.37092 1.49050 1.50318 1.27624 1.09815 1.49137 1.23174 0.88227 0.92583 0.96562 1.20975 0.95324 0.92111 0.95183 1.20989 0.94863 0.92004 1.47522 0.94180 1.25850 1.02197 0.95988 0.93673 1.70041 1.36967 1.02054 1.49295 0.85907 0.80147 0.77714 0.80463 1.17629 1.21781 1.16780 1.23871 1.01077 0.77572 0.99698 0.92027 0.91542 0.92241 0.92894 0.91514 0.92318 0.90453 0.91756 0.93690 0.89715 0.93264 0.83289 0.92643 0.92061 0.88899 0.91257 0.90537 0.91680 0.92310 0.89181 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.21 71.98 0.66 -1.23 16 2 C -0.11 -1.81 5.28 30.59 0.16 -1.65 16 3 C 0.10 2.03 0.72 3.53 0.00 2.03 16 4 C -0.15 -2.38 6.82 71.98 0.49 -1.89 16 5 C -0.18 -3.53 8.06 71.98 0.58 -2.95 16 6 N -0.67 -17.19 5.92 -452.10 -2.68 -19.87 16 7 C 0.08 2.11 2.10 44.17 0.09 2.21 16 8 H 0.09 2.20 5.19 -2.39 -0.01 2.19 16 9 C -0.14 -3.40 9.01 71.98 0.65 -2.75 16 10 C 0.52 18.47 7.43 87.66 0.65 19.12 16 11 O -0.59 -24.63 16.18 -3.02 -0.05 -24.68 16 12 N -0.64 -23.21 3.56 -836.20 -2.98 -26.19 16 13 C 0.12 4.60 8.39 86.48 0.73 5.33 16 14 C -0.02 -0.69 2.90 -10.89 -0.03 -0.72 16 15 C -0.52 -26.75 9.33 25.60 0.24 -26.51 16 16 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 17 C 0.02 1.14 5.47 84.66 0.46 1.60 16 18 N -0.94 -55.16 13.96 21.45 0.30 -54.86 16 19 Si 0.93 39.14 26.96 68.60 1.85 40.99 16 20 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.24 -9.41 6.29 99.48 0.63 -8.78 16 23 C 0.10 3.55 5.62 86.43 0.49 4.04 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.74 6.51 -2.38 -0.02 0.73 16 26 H 0.06 0.72 6.35 -2.39 -0.02 0.71 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 1.01 5.18 -2.39 -0.01 0.99 16 30 H 0.08 1.00 6.62 -2.39 -0.02 0.98 16 31 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.29 6.25 -2.39 -0.01 1.27 16 34 H 0.05 1.01 6.27 -2.39 -0.01 1.00 16 35 H 0.35 10.25 7.09 -89.70 -0.64 9.61 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.54 5.93 -2.38 -0.01 1.52 16 38 H 0.09 1.83 5.45 -2.39 -0.01 1.82 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.08 3.06 8.09 -2.39 -0.02 3.04 16 41 H 0.07 2.71 6.70 -2.38 -0.02 2.70 16 42 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.09 3.21 7.83 -2.39 -0.02 3.19 16 44 H 0.08 2.58 7.97 -2.39 -0.02 2.56 16 Total: -1.00 -62.04 332.18 1.89 -60.15 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.27 Total: 27.83 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.17 Total: -3.37 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -5.36 Total: -100.93 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.68 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.85 Total: 40.99 kcal Total: -62.04 1.89 -60.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.766 kcal (2) G-P(sol) polarization free energy of solvation -62.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds