Wall clock time and date at job start Mon Mar 30 2020 04:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46911 * 2 1 4 4 O 1.21278 * 119.99482 * 120.00390 * 3 2 1 5 5 N 1.34771 * 120.00074 * 300.00183 * 3 2 1 6 6 C 1.46505 * 119.99643 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46903 * 180.02562 * 6 5 3 8 8 C 1.52998 * 109.46873 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46700 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00803 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99889 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00186 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.53006 * 109.46670 * 240.00358 * 2 1 3 18 18 C 1.52995 * 109.46760 * 299.99846 * 17 2 1 19 19 C 1.52997 * 109.47231 * 299.99802 * 18 17 2 20 20 C 1.52999 * 109.47182 * 60.00671 * 19 18 17 21 21 C 1.52996 * 109.47220 * 120.00308 * 2 1 3 22 22 H 1.09004 * 109.46874 * 179.97438 * 21 2 1 23 23 N 1.46899 * 109.47278 * 299.99612 * 21 2 1 24 24 H 1.09002 * 109.47426 * 59.99161 * 1 2 3 25 25 H 1.08993 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46628 * 299.99616 * 1 2 3 27 27 H 0.96994 * 120.00413 * 0.02562 * 5 3 2 28 28 H 1.08994 * 109.47383 * 60.00051 * 6 5 3 29 29 H 1.09003 * 109.47228 * 299.99438 * 6 5 3 30 30 H 1.09004 * 109.47180 * 59.99849 * 7 6 5 31 31 H 1.08997 * 109.46702 * 300.00020 * 7 6 5 32 32 H 1.09004 * 109.47139 * 60.00071 * 8 7 6 33 33 H 1.08997 * 109.47675 * 299.99671 * 8 7 6 34 34 H 0.96998 * 120.00124 * 180.02562 * 12 11 9 35 35 H 1.09002 * 109.46804 * 60.00100 * 17 2 1 36 36 H 1.08994 * 109.46867 * 179.97438 * 17 2 1 37 37 H 1.08994 * 109.47460 * 60.00327 * 18 17 2 38 38 H 1.09008 * 109.46531 * 180.02562 * 18 17 2 39 39 H 1.09002 * 109.46961 * 180.02562 * 19 18 17 40 40 H 1.08994 * 109.47327 * 300.00606 * 19 18 17 41 41 H 1.09004 * 109.47192 * 59.99782 * 20 19 18 42 42 H 1.09002 * 109.47281 * 180.02562 * 20 19 18 43 43 H 1.00897 * 111.00171 * 179.97438 * 23 21 2 44 44 H 1.00901 * 111.00365 * 303.95656 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.7296 1.8174 0.9096 5 7 1.7067 2.2507 -1.0108 6 6 2.1955 3.6318 -1.0109 7 6 1.6848 4.3533 -2.2598 8 6 2.1948 5.7958 -2.2597 9 6 1.6923 6.5063 -3.4900 10 1 1.0710 5.9817 -4.2008 11 6 2.0257 7.8262 -3.7084 12 7 1.5868 8.4464 -4.7819 13 14 3.1009 8.7336 -2.4796 14 1 4.5284 8.5694 -2.8548 15 1 2.8789 8.1761 -1.1212 16 1 2.7503 10.1766 -2.4857 17 6 2.0400 -0.7212 -1.2494 18 6 1.5299 -2.1636 -1.2493 19 6 2.0400 -2.8849 -0.0002 20 6 1.5301 -2.1638 1.2491 21 6 2.0401 -0.7213 1.2492 22 1 3.1301 -0.7217 1.2489 23 7 1.5505 -0.0288 2.4486 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.1488 1.9336 -1.7380 28 1 3.2855 3.6315 -1.0113 29 1 1.8325 4.1458 -0.1209 30 1 0.5948 4.3537 -2.2591 31 1 2.0474 3.8394 -3.1500 32 1 3.2848 5.7959 -2.2602 33 1 1.8319 6.3095 -1.3695 34 1 1.8217 9.3749 -4.9358 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2496 37 1 0.4400 -2.1636 -1.2493 38 1 1.8936 -2.6776 -2.1392 39 1 1.6770 -3.9127 -0.0004 40 1 3.1299 -2.8849 -0.0002 41 1 0.4400 -2.1638 1.2492 42 1 1.8939 -2.6774 2.1391 43 1 1.8737 -0.4866 3.2877 44 1 1.8199 0.9435 2.4402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695480977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:24 Heat of formation + Delta-G solvation = -94.988677 kcal Electronic energy + Delta-G solvation = -21171.757937 eV Core-core repulsion = 18121.342423 eV Total energy + Delta-G solvation = -3050.415514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82150 -39.12873 -37.03899 -35.30675 -34.32182 -33.71144 -32.59651 -29.62252 -28.91857 -27.31736 -25.17821 -23.84112 -22.73719 -22.26002 -21.32086 -19.50466 -18.95772 -17.94786 -17.22005 -16.84483 -16.42331 -16.27087 -15.98878 -15.64525 -15.51409 -15.20270 -14.79334 -14.51444 -13.94733 -13.83269 -13.69413 -13.49577 -13.25092 -13.14683 -12.75296 -12.72851 -12.55211 -12.32481 -12.09047 -11.93308 -11.80841 -11.66951 -11.60741 -11.35046 -11.25379 -11.05935 -10.77448 -10.49658 -10.11967 -9.54438 -8.30603 -6.34519 1.35506 1.37351 1.49003 1.59189 2.19140 2.35105 3.05107 3.46384 3.53189 3.64199 4.02370 4.05637 4.16112 4.18533 4.22610 4.30661 4.41674 4.44661 4.47996 4.50320 4.77263 4.85677 4.86939 4.88191 4.93022 4.98649 5.01991 5.09222 5.20875 5.21598 5.28366 5.34781 5.36725 5.40241 5.47678 5.53601 5.62084 5.63881 6.25848 6.27154 6.50784 6.62729 6.73619 7.21727 7.30387 8.85849 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037105 B = 0.003455 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.441586 B = 8102.115836 C = 8509.522739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 C 0.517 3.483 4 O -0.585 6.585 5 N -0.713 5.713 6 C 0.126 3.874 7 C -0.100 4.100 8 C -0.011 4.011 9 C -0.531 4.531 10 H 0.038 0.962 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.249 1.249 16 H -0.284 1.284 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.108 4.108 21 C 0.116 3.884 22 H 0.016 0.984 23 N -0.851 5.851 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.055 0.945 27 H 0.412 0.588 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.342 0.658 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -25.112 11.037 27.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C 0.305 3.695 4 O -0.466 6.466 5 N -0.364 5.364 6 C 0.002 3.998 7 C -0.138 4.138 8 C -0.049 4.049 9 C -0.569 4.569 10 H 0.056 0.944 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.172 1.172 16 H -0.210 1.210 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.146 4.146 21 C 0.004 3.996 22 H 0.034 0.966 23 N -0.385 5.385 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.249 0.751 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.154 0.846 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.992 -24.812 11.307 27.285 hybrid contribution 1.341 1.242 0.028 1.828 sum 0.349 -23.570 11.335 26.156 Atomic orbital electron populations 1.21842 0.90706 1.04112 1.02215 1.20854 0.98880 0.89293 0.97780 1.21267 0.78834 0.88553 0.80842 1.90542 1.40300 1.78419 1.37332 1.46017 1.53036 1.11888 1.25463 1.21299 0.98594 0.81281 0.98577 1.21479 1.00773 0.95514 0.96018 1.19459 0.96313 0.93644 0.95532 1.21462 1.31519 0.96762 1.07143 0.94367 1.25978 0.97335 0.98655 0.97207 1.70056 1.47671 1.12276 1.29069 0.85705 0.79225 0.77500 0.80516 1.19238 1.17239 1.20966 1.21643 1.00546 0.97349 0.95267 1.21576 1.01923 0.93287 0.98489 1.21557 1.00599 0.99685 0.93860 1.21603 1.02005 0.92353 0.98624 1.21052 0.95216 0.94285 0.89095 0.96603 1.58978 1.67351 1.08024 1.04117 0.91769 0.89270 0.92604 0.75130 0.92561 0.92553 0.91744 0.91707 0.96300 0.96175 0.92477 0.90185 0.92609 0.90127 0.90348 0.89946 0.92582 0.90289 0.91510 0.84579 0.83902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.52 71.98 0.54 -1.68 16 2 C -0.06 -1.27 0.44 -52.93 -0.02 -1.29 16 3 C 0.52 14.07 6.23 87.66 0.55 14.61 16 4 O -0.59 -20.07 13.89 -3.02 -0.04 -20.11 16 5 N -0.71 -18.56 5.34 -463.05 -2.47 -21.03 16 6 C 0.13 4.04 5.67 86.38 0.49 4.53 16 7 C -0.10 -3.61 5.27 30.60 0.16 -3.45 16 8 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 9 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 10 H 0.04 2.36 7.99 -2.91 -0.02 2.33 16 11 C 0.01 0.30 5.47 84.65 0.46 0.76 16 12 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 13 Si 0.95 44.50 27.47 68.60 1.88 46.38 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 C -0.11 -1.73 4.63 30.59 0.14 -1.59 16 18 C -0.12 -1.29 5.65 30.59 0.17 -1.12 16 19 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 20 C -0.11 -1.53 5.22 30.59 0.16 -1.37 16 21 C 0.12 2.32 2.05 44.91 0.09 2.41 16 22 H 0.02 0.38 8.10 -2.39 -0.02 0.37 16 23 N -0.85 -18.44 8.47 -168.68 -1.43 -19.87 16 24 H 0.06 0.96 7.56 -2.39 -0.02 0.94 16 25 H 0.09 1.18 4.81 -2.39 -0.01 1.17 16 26 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 27 H 0.41 8.59 7.31 -92.71 -0.68 7.92 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.08 1.12 7.56 -2.39 -0.02 1.11 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.77 6.43 -2.39 -0.02 0.75 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.08 6.43 -2.39 -0.02 1.06 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.34 6.23 9.04 -89.70 -0.81 5.42 16 44 H 0.34 9.27 6.26 -89.69 -0.56 8.71 16 Total: -1.00 -68.35 333.10 0.43 -67.92 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -1.10 Total: 25.52 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.29 Total: -19.70 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -3.60 Total: -100.00 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -68.35 0.43 -67.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695480977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.073 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds