Wall clock time and date at job start Mon Mar 30 2020 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.62555 * 2 1 4 4 C 1.50475 * 109.63068 * 239.41898 * 2 1 3 5 5 C 1.54065 * 112.49733 * 334.43771 * 4 2 1 6 6 C 1.54068 * 112.81772 * 318.28721 * 5 4 2 7 7 C 1.50471 * 112.49855 * 318.28159 * 6 5 4 8 8 H 1.08994 * 109.62742 * 334.43813 * 7 6 5 9 9 N 1.46903 * 109.63148 * 213.85914 * 7 6 5 10 10 C 1.46899 * 110.99608 * 85.96381 * 9 7 6 11 11 C 1.50700 * 109.46786 * 180.02562 * 10 9 7 12 12 O 1.21294 * 120.00509 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00154 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00290 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99962 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47400 * 89.99770 * 18 16 14 20 20 H 1.48500 * 109.47389 * 209.99984 * 18 16 14 21 21 H 1.48501 * 109.47218 * 329.99728 * 18 16 14 22 22 C 1.54241 * 108.52308 * 94.14908 * 7 6 5 23 23 C 1.45541 * 112.40679 * 280.01177 * 22 7 6 24 24 H 1.08997 * 109.47349 * 338.74525 * 1 2 3 25 25 H 1.08998 * 109.46794 * 218.74555 * 1 2 3 26 26 H 1.09000 * 109.47336 * 98.74505 * 1 2 3 27 27 H 1.08999 * 109.47468 * 60.00175 * 3 2 1 28 28 H 1.09008 * 109.47019 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47241 * 299.99676 * 3 2 1 30 30 H 1.08996 * 108.88285 * 95.21414 * 4 2 1 31 31 H 1.09001 * 108.87726 * 213.66593 * 4 2 1 32 32 H 1.09000 * 108.81851 * 197.42831 * 5 4 2 33 33 H 1.09007 * 108.72677 * 79.08451 * 5 4 2 34 34 H 1.09004 * 108.87738 * 197.50049 * 6 5 4 35 35 H 1.09006 * 108.87728 * 79.05829 * 6 5 4 36 36 H 1.00897 * 111.00082 * 209.92140 * 9 7 6 37 37 H 1.09001 * 109.47579 * 299.99898 * 10 9 7 38 38 H 1.09004 * 109.46976 * 60.00782 * 10 9 7 39 39 H 0.97003 * 120.00040 * 0.02562 * 13 11 10 40 40 H 0.97003 * 120.00607 * 180.02562 * 17 16 14 41 41 H 1.09001 * 108.89287 * 159.26621 * 22 7 6 42 42 H 1.08995 * 108.81933 * 40.71669 * 22 7 6 43 43 H 1.08998 * 108.89855 * 301.19206 * 23 22 7 44 44 H 1.08995 * 108.89723 * 182.69272 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0355 -0.7211 -1.2202 5 6 1.0241 -1.7518 -1.7571 6 6 0.3422 -2.5596 -0.6363 7 6 1.3051 -2.9714 0.4442 8 1 2.3135 -3.0265 0.0344 9 7 0.9140 -4.2819 0.9806 10 6 1.4845 -5.3711 0.1768 11 6 1.0621 -6.6968 0.7556 12 8 0.3557 -6.7310 1.7411 13 7 1.4700 -7.8447 0.1789 14 6 1.0862 -9.0507 0.7058 15 1 0.4566 -9.0811 1.5828 16 6 1.5072 -10.2341 0.1116 17 7 2.2737 -10.1972 -0.9552 18 14 0.9837 -11.8774 0.8290 19 1 -0.2922 -12.3072 0.2024 20 1 2.0339 -12.8922 0.5599 21 1 0.7931 -11.7392 2.2953 22 6 1.2597 -1.9168 1.5688 23 6 2.0482 -0.7349 1.2532 24 1 -0.3634 0.9577 0.3725 25 1 -0.3633 -0.8015 0.6432 26 1 -0.3634 -0.1562 -1.0157 27 1 1.6820 1.9560 0.8900 28 1 3.1339 1.4382 -0.0005 29 1 1.6820 1.9559 -0.8900 30 1 2.2423 0.0101 -2.0016 31 1 2.9625 -1.2356 -0.9670 32 1 1.5445 -2.4420 -2.4211 33 1 0.2582 -1.2262 -2.3275 34 1 -0.1060 -3.4541 -1.0689 35 1 -0.4464 -1.9515 -0.1930 36 1 1.1802 -4.3699 1.9498 37 1 1.1253 -5.2921 -0.8493 38 1 2.5721 -5.2995 0.1877 39 1 2.0358 -7.8174 -0.6085 40 1 2.5673 -11.0232 -1.3703 41 1 1.6438 -2.3626 2.4864 42 1 0.2239 -1.6177 1.7289 43 1 3.0822 -1.0352 1.0839 44 1 2.0154 -0.0517 2.1018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697619566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:15 Heat of formation + Delta-G solvation = -36.014601 kcal Electronic energy + Delta-G solvation = -21237.264801 eV Core-core repulsion = 18189.406595 eV Total energy + Delta-G solvation = -3047.858206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49234 -38.16212 -35.68084 -33.85948 -32.74777 -31.76966 -31.11894 -28.24437 -27.44992 -26.17724 -24.45252 -23.04176 -22.85567 -19.68614 -19.14344 -18.25742 -17.81551 -16.39074 -15.87714 -15.46268 -15.02975 -14.95354 -14.47459 -14.30614 -13.96656 -13.48204 -13.29700 -13.05286 -12.85295 -12.78065 -12.33237 -12.00211 -11.79916 -11.66070 -11.52027 -11.47649 -11.23377 -11.02129 -10.90297 -10.66946 -10.43019 -10.37351 -10.34243 -10.24062 -10.18629 -9.66664 -9.47630 -8.37678 -7.97413 -7.90972 -6.38693 -3.79340 3.19990 3.28194 3.34242 3.95489 4.12605 4.32336 4.45651 4.63471 4.69339 4.89396 5.03407 5.12818 5.22402 5.26249 5.29165 5.31735 5.44630 5.49152 5.51852 5.58578 5.66499 5.76969 5.81756 5.86033 5.92244 5.94766 5.97535 6.00808 6.07349 6.15983 6.22142 6.26744 6.31105 6.33024 6.37354 6.42395 6.65148 7.38760 7.58033 7.80528 8.10105 8.65176 9.21244 9.58292 10.10143 10.79201 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.003353 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.348334 B = 8349.461504 C = 8577.482017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.094 3.906 8 H 0.041 0.959 9 N -0.666 5.666 10 C 0.052 3.948 11 C 0.442 3.558 12 O -0.583 6.583 13 N -0.565 5.565 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.021 3.979 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.270 1.270 22 C -0.126 4.126 23 C -0.105 4.105 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.348 0.652 37 H 0.084 0.916 38 H 0.041 0.959 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 20.681 -1.514 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.060 4.060 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.169 4.169 7 C -0.016 4.016 8 H 0.059 0.941 9 N -0.299 5.299 10 C -0.081 4.081 11 C 0.227 3.773 12 O -0.467 6.467 13 N -0.202 5.202 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.163 4.163 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.338 20.473 -1.278 20.516 hybrid contribution 1.183 -0.871 -0.067 1.471 sum 1.521 19.602 -1.345 19.707 Atomic orbital electron populations 1.22709 0.94742 1.01871 1.03043 1.20240 0.95963 0.94631 0.95186 1.21952 1.00728 0.95421 1.01443 1.21469 0.98877 0.97547 0.96826 1.21905 0.98206 0.97129 0.97929 1.21872 0.99125 1.00325 0.95609 1.21217 0.96986 0.88600 0.94788 0.94065 1.60173 1.63348 0.99834 1.06519 1.21686 0.96728 0.91177 0.98470 1.19861 0.85578 0.84937 0.86911 1.90517 1.41086 1.87103 1.28018 1.41870 1.45645 1.04708 1.27972 1.19705 1.29114 0.82044 1.11952 0.87953 1.25255 0.96757 0.99817 0.96160 1.69613 1.35265 1.28985 1.20572 0.85861 0.78079 0.80954 0.79411 1.20406 1.20964 1.19433 1.20756 1.01831 0.95549 0.98185 1.20525 0.99580 0.96704 0.97458 0.93734 0.89733 0.91846 0.92801 0.92937 0.92815 0.92522 0.92301 0.92557 0.92225 0.91513 0.89853 0.83234 0.89777 0.94116 0.77492 0.91916 0.92092 0.90541 0.92351 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 7.32 37.16 0.27 -1.22 16 2 C -0.06 -0.53 0.77 -155.12 -0.12 -0.65 16 3 C -0.14 -1.06 7.93 37.16 0.29 -0.76 16 4 C -0.11 -1.01 4.73 -27.44 -0.13 -1.14 16 5 C -0.11 -1.16 5.11 -25.62 -0.13 -1.29 16 6 C -0.13 -1.60 4.90 -27.44 -0.13 -1.73 16 7 C 0.09 1.21 2.16 -68.33 -0.15 1.07 16 8 H 0.04 0.54 6.65 -51.93 -0.35 0.20 16 9 N -0.67 -11.15 5.84 -108.64 -0.63 -11.79 16 10 C 0.05 0.96 5.90 -4.98 -0.03 0.93 16 11 C 0.44 10.72 7.82 -10.99 -0.09 10.63 16 12 O -0.58 -16.20 15.78 5.55 0.09 -16.11 16 13 N -0.57 -14.66 5.29 -10.96 -0.06 -14.72 16 14 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 15 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 18 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.13 -1.38 4.73 -29.60 -0.14 -1.52 16 23 C -0.10 -0.98 4.45 -29.60 -0.13 -1.11 16 24 H 0.04 0.36 7.72 -51.93 -0.40 -0.04 16 25 H 0.08 0.82 3.02 -51.93 -0.16 0.66 16 26 H 0.06 0.56 5.55 -51.93 -0.29 0.27 16 27 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16 31 H 0.06 0.58 6.63 -51.93 -0.34 0.23 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.56 6.94 -51.93 -0.36 0.20 16 34 H 0.07 0.95 7.27 -51.93 -0.38 0.57 16 35 H 0.08 0.96 4.09 -51.93 -0.21 0.75 16 36 H 0.35 6.01 7.76 -39.29 -0.31 5.71 16 37 H 0.08 1.46 7.54 -51.93 -0.39 1.07 16 38 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 39 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 0.69 7.64 -51.93 -0.40 0.29 16 42 H 0.08 0.84 5.52 -51.93 -0.29 0.55 16 43 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 44 H 0.06 0.52 7.97 -51.93 -0.41 0.10 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -30.47 325.25 -7.73 -38.20 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -7.01 Total: 12.33 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.72 Total: -4.94 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.03 Total: -50.69 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.09 Total: -16.11 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.47 -7.73 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697619566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.186 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds