Wall clock time and date at job start Mon Mar 30 2020 04:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.62555 * 2 1 4 4 C 1.50475 * 109.63068 * 239.41898 * 2 1 3 5 5 C 1.54065 * 112.49733 * 334.43771 * 4 2 1 6 6 C 1.54068 * 112.81772 * 318.28721 * 5 4 2 7 7 C 1.50471 * 112.49855 * 318.28159 * 6 5 4 8 8 H 1.08994 * 109.62742 * 334.43813 * 7 6 5 9 9 N 1.46903 * 109.63148 * 213.85914 * 7 6 5 10 10 C 1.46899 * 110.99608 * 85.96381 * 9 7 6 11 11 C 1.50700 * 109.46786 * 180.02562 * 10 9 7 12 12 O 1.21294 * 120.00509 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00154 * 180.02562 * 11 10 9 14 14 C 1.37094 * 120.00132 * 179.97438 * 13 11 10 15 15 H 1.07998 * 120.00290 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99962 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00158 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00116 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47400 * 89.99770 * 18 16 14 20 20 H 1.48500 * 109.47389 * 209.99984 * 18 16 14 21 21 H 1.48501 * 109.47218 * 329.99728 * 18 16 14 22 22 C 1.54241 * 108.52308 * 94.14908 * 7 6 5 23 23 C 1.45541 * 112.40679 * 280.01177 * 22 7 6 24 24 H 1.08997 * 109.47349 * 338.74525 * 1 2 3 25 25 H 1.08998 * 109.46794 * 218.74555 * 1 2 3 26 26 H 1.09000 * 109.47336 * 98.74505 * 1 2 3 27 27 H 1.08999 * 109.47468 * 60.00175 * 3 2 1 28 28 H 1.09008 * 109.47019 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47241 * 299.99676 * 3 2 1 30 30 H 1.08996 * 108.88285 * 95.21414 * 4 2 1 31 31 H 1.09001 * 108.87726 * 213.66593 * 4 2 1 32 32 H 1.09000 * 108.81851 * 197.42831 * 5 4 2 33 33 H 1.09007 * 108.72677 * 79.08451 * 5 4 2 34 34 H 1.09004 * 108.87738 * 197.50049 * 6 5 4 35 35 H 1.09006 * 108.87728 * 79.05829 * 6 5 4 36 36 H 1.00897 * 111.00082 * 209.92140 * 9 7 6 37 37 H 1.09001 * 109.47579 * 299.99898 * 10 9 7 38 38 H 1.09004 * 109.46976 * 60.00782 * 10 9 7 39 39 H 0.97003 * 120.00040 * 0.02562 * 13 11 10 40 40 H 0.97003 * 120.00607 * 180.02562 * 17 16 14 41 41 H 1.09001 * 108.89287 * 159.26621 * 22 7 6 42 42 H 1.08995 * 108.81933 * 40.71669 * 22 7 6 43 43 H 1.08998 * 108.89855 * 301.19206 * 23 22 7 44 44 H 1.08995 * 108.89723 * 182.69272 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 2.0355 -0.7211 -1.2202 5 6 1.0241 -1.7518 -1.7571 6 6 0.3422 -2.5596 -0.6363 7 6 1.3051 -2.9714 0.4442 8 1 2.3135 -3.0265 0.0344 9 7 0.9140 -4.2819 0.9806 10 6 1.4845 -5.3711 0.1768 11 6 1.0621 -6.6968 0.7556 12 8 0.3557 -6.7310 1.7411 13 7 1.4700 -7.8447 0.1789 14 6 1.0862 -9.0507 0.7058 15 1 0.4566 -9.0811 1.5828 16 6 1.5072 -10.2341 0.1116 17 7 2.2737 -10.1972 -0.9552 18 14 0.9837 -11.8774 0.8290 19 1 -0.2922 -12.3072 0.2024 20 1 2.0339 -12.8922 0.5599 21 1 0.7931 -11.7392 2.2953 22 6 1.2597 -1.9168 1.5688 23 6 2.0482 -0.7349 1.2532 24 1 -0.3634 0.9577 0.3725 25 1 -0.3633 -0.8015 0.6432 26 1 -0.3634 -0.1562 -1.0157 27 1 1.6820 1.9560 0.8900 28 1 3.1339 1.4382 -0.0005 29 1 1.6820 1.9559 -0.8900 30 1 2.2423 0.0101 -2.0016 31 1 2.9625 -1.2356 -0.9670 32 1 1.5445 -2.4420 -2.4211 33 1 0.2582 -1.2262 -2.3275 34 1 -0.1060 -3.4541 -1.0689 35 1 -0.4464 -1.9515 -0.1930 36 1 1.1802 -4.3699 1.9498 37 1 1.1253 -5.2921 -0.8493 38 1 2.5721 -5.2995 0.1877 39 1 2.0358 -7.8174 -0.6085 40 1 2.5673 -11.0232 -1.3703 41 1 1.6438 -2.3626 2.4864 42 1 0.2239 -1.6177 1.7289 43 1 3.0822 -1.0352 1.0839 44 1 2.0154 -0.0517 2.1018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697619566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:14 Heat of formation + Delta-G solvation = -56.093360 kcal Electronic energy + Delta-G solvation = -21238.135482 eV Core-core repulsion = 18189.406595 eV Total energy + Delta-G solvation = -3048.728887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36264 -40.06158 -36.91152 -35.88594 -33.58332 -33.33940 -32.75242 -29.05786 -28.61733 -27.37200 -26.09194 -24.04590 -23.85942 -21.12228 -20.58616 -19.91292 -18.97708 -17.91492 -17.04109 -16.63882 -16.46433 -16.18505 -16.03203 -15.67062 -15.36731 -14.88444 -14.36056 -14.17285 -13.93683 -13.78442 -13.53361 -13.43338 -13.09647 -12.96625 -12.78235 -12.55405 -12.43337 -12.38877 -12.12869 -12.04430 -11.74111 -11.52173 -11.51044 -11.30751 -11.11425 -10.98602 -10.56562 -10.31684 -10.03058 -9.29261 -8.47654 -5.96774 1.37503 1.41101 1.54196 2.03252 2.28559 2.91541 3.19301 3.48893 3.66988 3.77697 3.98959 4.10052 4.20594 4.30400 4.34169 4.40503 4.46671 4.48082 4.54568 4.59508 4.75607 4.79519 4.85819 4.95456 4.97760 5.12675 5.13806 5.18367 5.21380 5.27071 5.34726 5.38867 5.40009 5.42590 5.49169 5.60376 5.61583 5.79530 5.92902 6.16934 6.48297 6.58806 7.11096 7.54326 8.09617 8.69891 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.003353 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.348334 B = 8349.461504 C = 8577.482017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.130 4.130 7 C 0.096 3.904 8 H 0.044 0.956 9 N -0.679 5.679 10 C 0.068 3.932 11 C 0.438 3.562 12 O -0.622 6.622 13 N -0.573 5.573 14 C -0.335 4.335 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.994 3.006 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.272 1.272 22 C -0.120 4.120 23 C -0.103 4.103 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.343 0.657 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 21.741 -2.009 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.059 4.059 3 C -0.193 4.193 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.167 4.167 7 C -0.013 4.013 8 H 0.061 0.939 9 N -0.311 5.311 10 C -0.064 4.064 11 C 0.225 3.775 12 O -0.509 6.509 13 N -0.210 5.210 14 C -0.465 4.465 15 H 0.097 0.903 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.818 3.182 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.157 4.157 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.816 21.557 -1.802 21.648 hybrid contribution 1.024 -1.159 0.082 1.549 sum 1.840 20.398 -1.720 20.553 Atomic orbital electron populations 1.22674 0.94839 1.01923 1.02859 1.20238 0.95825 0.95310 0.94489 1.21925 1.00927 0.94453 1.01985 1.21462 0.98193 0.97451 0.97411 1.21866 0.98619 0.97162 0.97113 1.21874 0.99281 0.99709 0.95854 1.21306 0.97154 0.87179 0.95672 0.93857 1.60206 1.63812 1.00962 1.06168 1.21514 0.97836 0.88406 0.98677 1.20861 0.84163 0.86390 0.86049 1.90482 1.42641 1.87984 1.29769 1.41937 1.46034 1.04790 1.28250 1.19683 1.30599 0.83808 1.12393 0.90313 1.26063 0.96229 1.02721 0.96259 1.69673 1.35229 1.30275 1.20988 0.84913 0.78209 0.76727 0.78397 1.19620 1.19420 1.19706 1.20719 1.02282 0.95548 0.97159 1.20505 0.99149 0.96141 0.98300 0.92910 0.90750 0.91798 0.92335 0.92627 0.92254 0.91374 0.92806 0.93024 0.91186 0.93895 0.89210 0.83817 0.88482 0.92110 0.77034 0.91249 0.92534 0.90493 0.92394 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 7.32 71.98 0.53 -2.10 16 2 C -0.06 -0.89 0.77 -52.58 -0.04 -0.93 16 3 C -0.14 -1.71 7.93 71.98 0.57 -1.14 16 4 C -0.11 -1.76 4.73 30.14 0.14 -1.62 16 5 C -0.11 -2.06 5.11 31.32 0.16 -1.90 16 6 C -0.13 -3.03 4.90 30.14 0.15 -2.88 16 7 C 0.10 2.39 2.16 44.52 0.10 2.49 16 8 H 0.04 1.08 6.65 -2.39 -0.02 1.07 16 9 N -0.68 -22.65 5.84 -497.64 -2.90 -25.56 16 10 C 0.07 2.49 5.90 85.56 0.50 3.00 16 11 C 0.44 21.65 7.82 87.66 0.69 22.33 16 12 O -0.62 -35.56 15.78 -3.07 -0.05 -35.61 16 13 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 14 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 15 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 17 N -0.92 -50.42 13.05 21.66 0.28 -50.14 16 18 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C -0.12 -2.49 4.73 28.74 0.14 -2.36 16 23 C -0.10 -1.74 4.45 28.74 0.13 -1.61 16 24 H 0.05 0.74 7.72 -2.39 -0.02 0.73 16 25 H 0.07 1.33 3.02 -2.39 -0.01 1.33 16 26 H 0.06 1.00 5.55 -2.39 -0.01 0.99 16 27 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 30 H 0.07 0.98 7.69 -2.39 -0.02 0.96 16 31 H 0.05 0.94 6.63 -2.39 -0.02 0.93 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.18 6.94 -2.38 -0.02 1.16 16 34 H 0.04 1.21 7.27 -2.39 -0.02 1.19 16 35 H 0.09 1.98 4.09 -2.38 -0.01 1.97 16 36 H 0.34 11.94 7.76 -89.70 -0.70 11.24 16 37 H 0.10 3.32 7.54 -2.39 -0.02 3.30 16 38 H 0.06 2.00 8.06 -2.38 -0.02 1.98 16 39 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 40 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.06 1.23 7.64 -2.39 -0.02 1.21 16 42 H 0.08 1.61 5.52 -2.39 -0.01 1.60 16 43 H 0.06 1.00 7.47 -2.39 -0.02 0.98 16 44 H 0.07 1.06 7.97 -2.39 -0.02 1.04 16 Total: -1.00 -65.31 325.25 1.66 -63.65 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.41 Total: 39.68 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.34 Total: -5.62 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.24 Total: -107.62 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.31 1.66 -63.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697619566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.555 kcal (2) G-P(sol) polarization free energy of solvation -65.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds