Wall clock time and date at job start Mon Mar 30 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47253 * 239.99915 * 2 1 3 5 5 C 1.53003 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47115 * 60.00327 * 5 4 2 7 7 C 1.53001 * 109.47228 * 299.99874 * 6 5 4 8 8 C 1.53000 * 109.47304 * 119.99512 * 2 1 3 9 9 H 1.09007 * 109.46734 * 60.00535 * 8 2 1 10 10 N 1.46899 * 109.47064 * 300.00441 * 8 2 1 11 11 C 1.46905 * 110.99577 * 161.70470 * 10 8 2 12 12 C 1.53244 * 109.33674 * 187.25278 * 11 10 8 13 13 N 1.47080 * 108.52003 * 306.16788 * 12 11 10 14 14 C 1.36936 * 120.88216 * 231.20502 * 13 12 11 15 15 H 1.07998 * 119.99606 * 27.04291 * 14 13 12 16 16 C 1.38806 * 120.00155 * 207.04248 * 14 13 12 17 17 N 1.31621 * 119.99793 * 16.49330 * 16 14 13 18 18 Si 1.86808 * 120.00150 * 196.48778 * 16 14 13 19 19 H 1.48500 * 109.46670 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46727 * 119.99838 * 18 16 14 21 21 H 1.48494 * 109.47226 * 240.00169 * 18 16 14 22 22 C 1.47075 * 118.23606 * 51.18892 * 13 12 11 23 23 C 1.46897 * 110.99964 * 286.00294 * 10 8 2 24 24 H 1.09001 * 109.47392 * 300.00088 * 1 2 3 25 25 H 1.09003 * 109.47484 * 60.00580 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 0.96701 * 113.99909 * 299.99488 * 3 2 1 28 28 H 1.08996 * 109.47092 * 299.99419 * 4 2 1 29 29 H 1.08999 * 109.47397 * 59.99857 * 4 2 1 30 30 H 1.09001 * 109.47112 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47617 * 300.00037 * 5 4 2 32 32 H 1.09000 * 109.47115 * 59.99403 * 6 5 4 33 33 H 1.09002 * 109.47259 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47178 * 300.00368 * 7 6 5 35 35 H 1.08990 * 109.47620 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.49617 * 307.21032 * 11 10 8 37 37 H 1.08996 * 109.49319 * 67.29142 * 11 10 8 38 38 H 1.08999 * 109.62821 * 65.88000 * 12 11 10 39 39 H 1.09002 * 109.62823 * 186.45955 * 12 11 10 40 40 H 0.97007 * 119.99329 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.62612 * 189.10026 * 22 13 12 42 42 H 1.09000 * 109.63006 * 68.52360 * 22 13 12 43 43 H 1.08995 * 109.49485 * 292.70432 * 23 10 8 44 44 H 1.08994 * 109.49162 * 52.76186 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2494 6 6 4.0805 -1.4416 -0.0002 7 6 3.5704 -0.7204 1.2491 8 6 2.0400 -0.7211 1.2493 9 1 1.6767 -1.7489 1.2493 10 7 1.5503 -0.0286 2.4487 11 6 1.6372 -0.8971 3.6303 12 6 0.9539 -0.2092 4.8170 13 7 1.5423 1.1285 4.9837 14 6 2.0097 1.5439 6.2019 15 1 2.3596 0.8189 6.9218 16 6 2.0338 2.8968 6.5115 17 7 1.3265 3.7477 5.7986 18 14 3.0697 3.5098 7.9400 19 1 3.7649 2.3619 8.5757 20 1 4.0751 4.4821 7.4408 21 1 2.1931 4.1728 8.9385 22 6 1.6156 2.0079 3.8071 23 6 2.2728 1.2328 2.6601 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7209 1.8654 -0.7651 28 1 1.6767 -1.7489 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.9334 -1.2349 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.7175 -2.4693 0.0000 33 1 5.1705 -1.4416 -0.0006 34 1 3.9333 0.3075 1.2489 35 1 3.9344 -1.2336 2.1390 36 1 1.1392 -1.8443 3.4230 37 1 2.6844 -1.0811 3.8702 38 1 -0.1145 -0.1175 4.6215 39 1 1.1144 -0.7951 5.7220 40 1 1.3431 4.6931 6.0152 41 1 2.2136 2.8878 4.0444 42 1 0.6108 2.3127 3.5146 43 1 3.3111 1.0191 2.9137 44 1 2.2363 1.8300 1.7491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699421018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:38 Heat of formation + Delta-G solvation = -26.051819 kcal Electronic energy + Delta-G solvation = -22703.772115 eV Core-core repulsion = 19656.345927 eV Total energy + Delta-G solvation = -3047.426188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04526 -37.16705 -35.05103 -33.96590 -31.40740 -31.19209 -29.69492 -29.09839 -26.59555 -25.28535 -23.21726 -22.51766 -21.76533 -21.00745 -19.62030 -18.56945 -16.64135 -16.26086 -15.57902 -15.11267 -14.63476 -14.43659 -14.18262 -13.70898 -13.67973 -13.26176 -13.17209 -13.03474 -12.74227 -12.23572 -12.09833 -11.99609 -11.75339 -11.27835 -11.21175 -10.97538 -10.95724 -10.81811 -10.61011 -10.56266 -10.39362 -10.10433 -9.99013 -9.81798 -9.71993 -9.56812 -9.06632 -8.40759 -7.53169 -6.53304 -5.68295 -3.09396 3.42184 3.49577 3.51934 4.35996 4.42409 4.58001 4.71830 4.87470 5.03705 5.16973 5.22854 5.45142 5.47616 5.51090 5.53385 5.62971 5.70593 5.72910 5.89805 5.92447 5.97831 6.04423 6.14020 6.15043 6.18717 6.20788 6.27894 6.36921 6.49188 6.60742 6.62428 6.68113 6.80477 7.04407 7.12962 7.45007 7.78809 7.82974 7.85326 7.97311 8.01133 8.54564 9.32149 9.95917 10.55021 11.40022 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.005284 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.333275 B = 5297.863444 C = 5347.441729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 O -0.540 6.540 4 C -0.143 4.143 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.148 4.148 8 C 0.100 3.900 9 H 0.077 0.923 10 N -0.518 5.518 11 C 0.041 3.959 12 C 0.150 3.850 13 N -0.596 5.596 14 C -0.248 4.248 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.903 5.903 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.179 3.821 23 C 0.026 3.974 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.361 0.639 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.052 0.948 40 H 0.252 0.748 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.710 -9.344 -15.320 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 O -0.346 6.346 4 C -0.181 4.181 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.187 4.187 8 C -0.009 4.009 9 H 0.095 0.905 10 N -0.241 5.241 11 C -0.088 4.088 12 C 0.024 3.976 13 N -0.319 5.319 14 C -0.378 4.378 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.053 3.947 23 C -0.102 4.102 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.209 0.791 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.037 0.963 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.459 -9.246 -14.757 17.476 hybrid contribution 1.097 0.228 0.335 1.169 sum 2.556 -9.018 -14.423 17.201 Atomic orbital electron populations 1.22332 0.95445 1.02046 1.02672 1.21134 0.92688 0.82433 0.93435 1.86670 1.76994 1.22966 1.47970 1.22239 0.96518 1.01280 0.98111 1.21444 0.95170 1.01271 0.97285 1.21477 0.99921 0.98857 0.94963 1.22186 0.97409 1.01999 0.97125 1.21657 0.92448 0.96395 0.90399 0.90493 1.62131 1.55420 1.05027 1.01543 1.22636 0.98766 0.95135 0.92292 1.20942 0.94981 0.87821 0.93900 1.44155 1.69596 1.11984 1.06207 1.19229 1.34296 0.91214 0.93069 0.91854 1.25011 0.99309 0.97156 0.98320 1.70054 1.40730 1.02272 1.41746 0.86256 0.80037 0.78601 0.82097 1.20397 1.21652 1.21788 1.20873 0.97938 0.92635 0.83239 1.23262 0.94684 0.90707 1.01574 0.89867 0.93601 0.92632 0.79143 0.91477 0.91935 0.92693 0.91341 0.92631 0.92473 0.90301 0.92509 0.92596 0.95622 0.95942 0.92995 0.93816 0.89857 0.96076 0.96319 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 8.66 37.15 0.32 -1.75 16 2 C 0.14 1.80 0.74 -90.62 -0.07 1.73 16 3 O -0.54 -7.21 8.29 -35.23 -0.29 -7.50 16 4 C -0.14 -1.44 4.92 -26.73 -0.13 -1.57 16 5 C -0.11 -1.18 5.78 -26.73 -0.15 -1.33 16 6 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.15 -2.13 4.15 -26.71 -0.11 -2.24 16 8 C 0.10 1.47 1.58 -67.69 -0.11 1.36 16 9 H 0.08 1.07 7.81 -51.92 -0.41 0.67 16 10 N -0.52 -9.41 3.75 -226.31 -0.85 -10.26 16 11 C 0.04 0.77 5.38 -3.70 -0.02 0.75 16 12 C 0.15 3.35 6.69 -3.60 -0.02 3.32 16 13 N -0.60 -15.73 3.04 -172.01 -0.52 -16.25 16 14 C -0.25 -7.09 9.63 -15.06 -0.15 -7.24 16 15 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 16 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 17 N -0.90 -27.09 11.15 55.49 0.62 -26.47 16 18 Si 0.90 22.32 29.59 -169.99 -5.03 17.30 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 C 0.18 4.54 5.41 -3.60 -0.02 4.52 16 23 C 0.03 0.54 4.30 -3.70 -0.02 0.52 16 24 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.36 3.49 9.05 45.56 0.41 3.91 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.29 6.03 -51.93 -0.31 0.98 16 35 H 0.06 0.88 7.22 -51.93 -0.37 0.50 16 36 H 0.06 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.03 0.50 7.27 -51.93 -0.38 0.13 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 1.11 7.95 -51.93 -0.41 0.70 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.08 2.35 6.14 -51.93 -0.32 2.03 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.41 6.70 -51.93 -0.35 0.06 16 44 H 0.10 1.99 4.77 -51.93 -0.25 1.74 16 LS Contribution 320.84 15.07 4.83 4.83 Total: -1.00 -30.83 320.84 -8.90 -39.73 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.94 Total: 2.09 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.72 Total: -3.47 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.75 Total: -52.98 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.29 Total: -7.50 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.83 -8.90 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.681 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds