Wall clock time and date at job start Mon Mar 30 2020 04:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46786 * 2 1 4 4 C 1.52997 * 109.47253 * 239.99915 * 2 1 3 5 5 C 1.53003 * 109.46972 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47115 * 60.00327 * 5 4 2 7 7 C 1.53001 * 109.47228 * 299.99874 * 6 5 4 8 8 C 1.53000 * 109.47304 * 119.99512 * 2 1 3 9 9 H 1.09007 * 109.46734 * 60.00535 * 8 2 1 10 10 N 1.46899 * 109.47064 * 300.00441 * 8 2 1 11 11 C 1.46905 * 110.99577 * 161.70470 * 10 8 2 12 12 C 1.53244 * 109.33674 * 187.25278 * 11 10 8 13 13 N 1.47080 * 108.52003 * 306.16788 * 12 11 10 14 14 C 1.36936 * 120.88216 * 231.20502 * 13 12 11 15 15 H 1.07998 * 119.99606 * 27.04291 * 14 13 12 16 16 C 1.38806 * 120.00155 * 207.04248 * 14 13 12 17 17 N 1.31621 * 119.99793 * 16.49330 * 16 14 13 18 18 Si 1.86808 * 120.00150 * 196.48778 * 16 14 13 19 19 H 1.48500 * 109.46670 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46727 * 119.99838 * 18 16 14 21 21 H 1.48494 * 109.47226 * 240.00169 * 18 16 14 22 22 C 1.47075 * 118.23606 * 51.18892 * 13 12 11 23 23 C 1.46897 * 110.99964 * 286.00294 * 10 8 2 24 24 H 1.09001 * 109.47392 * 300.00088 * 1 2 3 25 25 H 1.09003 * 109.47484 * 60.00580 * 1 2 3 26 26 H 1.09007 * 109.46788 * 179.97438 * 1 2 3 27 27 H 0.96701 * 113.99909 * 299.99488 * 3 2 1 28 28 H 1.08996 * 109.47092 * 299.99419 * 4 2 1 29 29 H 1.08999 * 109.47397 * 59.99857 * 4 2 1 30 30 H 1.09001 * 109.47112 * 179.97438 * 5 4 2 31 31 H 1.09000 * 109.47617 * 300.00037 * 5 4 2 32 32 H 1.09000 * 109.47115 * 59.99403 * 6 5 4 33 33 H 1.09002 * 109.47259 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47178 * 300.00368 * 7 6 5 35 35 H 1.08990 * 109.47620 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.49617 * 307.21032 * 11 10 8 37 37 H 1.08996 * 109.49319 * 67.29142 * 11 10 8 38 38 H 1.08999 * 109.62821 * 65.88000 * 12 11 10 39 39 H 1.09002 * 109.62823 * 186.45955 * 12 11 10 40 40 H 0.97007 * 119.99329 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.62612 * 189.10026 * 22 13 12 42 42 H 1.09000 * 109.63006 * 68.52360 * 22 13 12 43 43 H 1.08995 * 109.49485 * 292.70432 * 23 10 8 44 44 H 1.08994 * 109.49162 * 52.76186 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2494 6 6 4.0805 -1.4416 -0.0002 7 6 3.5704 -0.7204 1.2491 8 6 2.0400 -0.7211 1.2493 9 1 1.6767 -1.7489 1.2493 10 7 1.5503 -0.0286 2.4487 11 6 1.6372 -0.8971 3.6303 12 6 0.9539 -0.2092 4.8170 13 7 1.5423 1.1285 4.9837 14 6 2.0097 1.5439 6.2019 15 1 2.3596 0.8189 6.9218 16 6 2.0338 2.8968 6.5115 17 7 1.3265 3.7477 5.7986 18 14 3.0697 3.5098 7.9400 19 1 3.7649 2.3619 8.5757 20 1 4.0751 4.4821 7.4408 21 1 2.1931 4.1728 8.9385 22 6 1.6156 2.0079 3.8071 23 6 2.2728 1.2328 2.6601 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7209 1.8654 -0.7651 28 1 1.6767 -1.7489 -1.2491 29 1 1.6767 -0.2075 -2.1392 30 1 3.9334 -1.2349 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.7175 -2.4693 0.0000 33 1 5.1705 -1.4416 -0.0006 34 1 3.9333 0.3075 1.2489 35 1 3.9344 -1.2336 2.1390 36 1 1.1392 -1.8443 3.4230 37 1 2.6844 -1.0811 3.8702 38 1 -0.1145 -0.1175 4.6215 39 1 1.1144 -0.7951 5.7220 40 1 1.3431 4.6931 6.0152 41 1 2.2136 2.8878 4.0444 42 1 0.6108 2.3127 3.5146 43 1 3.3111 1.0191 2.9137 44 1 2.2363 1.8300 1.7491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699421018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:38 Heat of formation + Delta-G solvation = -47.169852 kcal Electronic energy + Delta-G solvation = -22704.687861 eV Core-core repulsion = 19656.345927 eV Total energy + Delta-G solvation = -3048.341934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20877 -38.73861 -36.25506 -35.52918 -33.27110 -32.24200 -31.50197 -30.46164 -28.05136 -26.69025 -24.86066 -24.27595 -23.12839 -21.98617 -20.92318 -20.16980 -18.57865 -17.43308 -16.91050 -16.64581 -16.09431 -15.70817 -15.61780 -15.28001 -15.13340 -14.89606 -14.67581 -14.46158 -13.89406 -13.63721 -13.44989 -13.20124 -13.03096 -12.84176 -12.68701 -12.41930 -12.35234 -12.27419 -12.14722 -11.97849 -11.87009 -11.71534 -11.49103 -11.41021 -11.27126 -10.88478 -10.58654 -10.34744 -9.05709 -8.63922 -7.86837 -5.32385 1.43938 1.45081 1.56316 2.49829 3.06624 3.27940 3.40392 3.73869 3.76698 3.94438 4.04811 4.21031 4.24292 4.39168 4.40641 4.47048 4.53352 4.58665 4.62714 4.69020 4.76228 4.86103 4.90794 4.97628 5.02683 5.04380 5.07899 5.17625 5.22457 5.27789 5.27913 5.32924 5.41461 5.53316 5.58848 5.62175 5.70433 5.73331 6.30411 6.40276 6.42681 7.09920 7.14013 7.85180 8.39930 9.19656 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.005284 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.333275 B = 5297.863444 C = 5347.441729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 O -0.563 6.563 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.143 4.143 8 C 0.097 3.903 9 H 0.094 0.906 10 N -0.522 5.522 11 C 0.052 3.948 12 C 0.146 3.854 13 N -0.615 5.615 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.190 3.810 23 C 0.051 3.949 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.379 0.621 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.048 0.952 42 H -0.009 1.009 43 H 0.003 0.997 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -11.216 -17.085 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.104 3.896 3 O -0.372 6.372 4 C -0.173 4.173 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.182 4.182 8 C -0.012 4.012 9 H 0.112 0.888 10 N -0.245 5.245 11 C -0.078 4.078 12 C 0.020 3.980 13 N -0.339 5.339 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.064 3.936 23 C -0.078 4.078 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.009 0.991 43 H 0.021 0.979 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.932 -11.151 -16.546 20.046 hybrid contribution 0.895 0.783 0.867 1.472 sum 2.828 -10.368 -15.679 19.008 Atomic orbital electron populations 1.22267 0.95315 1.02547 1.01871 1.21153 0.92666 0.82242 0.93564 1.86557 1.77345 1.23814 1.49452 1.22171 0.96138 1.01808 0.97143 1.21432 0.95393 1.00695 0.97397 1.21462 1.00203 0.99294 0.93836 1.22084 0.97143 1.00687 0.98265 1.21854 0.92716 0.97131 0.89477 0.88833 1.62069 1.55362 1.04398 1.02691 1.22483 0.98101 0.95990 0.91206 1.21103 0.94653 0.86288 0.95963 1.44427 1.70154 1.13409 1.05891 1.19569 1.34310 0.91664 0.93887 0.91707 1.25822 1.00493 0.97266 1.01210 1.70219 1.42182 1.02285 1.43575 0.85184 0.78211 0.78056 0.78864 1.19150 1.21623 1.21604 1.20608 0.95879 0.92377 0.84768 1.22857 0.93172 0.91895 0.99836 0.93523 0.91545 0.91454 0.77147 0.90158 0.89930 0.90521 0.92515 0.91139 0.92130 0.92879 0.94112 0.89101 0.96479 0.96768 0.92480 0.94127 0.93379 0.99065 0.97912 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.66 71.98 0.62 -3.03 16 2 C 0.14 3.26 0.74 -10.80 -0.01 3.25 16 3 O -0.56 -14.32 8.29 -148.98 -1.24 -15.56 16 4 C -0.13 -2.16 4.92 30.59 0.15 -2.01 16 5 C -0.11 -1.92 5.78 30.60 0.18 -1.74 16 6 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 7 C -0.14 -3.94 4.15 30.61 0.13 -3.81 16 8 C 0.10 2.65 1.58 44.93 0.07 2.72 16 9 H 0.09 2.29 7.81 -2.38 -0.02 2.27 16 10 N -0.52 -18.78 3.75 -869.92 -3.26 -22.04 16 11 C 0.05 1.89 5.38 86.38 0.46 2.36 16 12 C 0.15 6.55 6.69 86.35 0.58 7.13 16 13 N -0.61 -33.50 3.04 -698.13 -2.12 -35.62 16 14 C -0.26 -15.45 9.63 84.03 0.81 -14.64 16 15 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 16 C -0.05 -3.10 4.94 84.86 0.42 -2.68 16 17 N -0.94 -58.25 11.15 21.65 0.24 -58.01 16 18 Si 0.97 46.82 29.59 68.60 2.03 48.85 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 C 0.19 10.10 5.41 86.35 0.47 10.57 16 23 C 0.05 2.17 4.30 86.38 0.37 2.54 16 24 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.38 6.64 9.05 -74.06 -0.67 5.97 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.73 6.03 -2.39 -0.01 1.72 16 35 H 0.04 1.23 7.22 -2.39 -0.02 1.21 16 36 H 0.09 2.72 7.91 -2.39 -0.02 2.70 16 37 H 0.02 0.66 7.27 -2.39 -0.02 0.64 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 40 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.05 2.87 6.14 -2.39 -0.01 2.86 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.00 0.12 6.70 -2.39 -0.02 0.11 16 44 H 0.11 4.48 4.77 -2.39 -0.01 4.47 16 Total: -1.00 -69.13 320.84 0.38 -68.75 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.30 Total: 15.01 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 4.43 Total: -1.37 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -5.14 Total: -115.67 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.24 Total: -15.56 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -69.13 0.38 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699421018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.575 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds