Wall clock time and date at job start Mon Mar 30 2020 05:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46922 * 2 1 4 4 H 1.08998 * 109.46129 * 56.56020 * 3 2 1 5 5 C 1.53040 * 109.46518 * 296.58168 * 3 2 1 6 6 C 1.53113 * 109.27748 * 180.80652 * 5 3 2 7 7 C 1.53117 * 109.16485 * 57.65032 * 6 5 3 8 8 C 1.53033 * 109.28006 * 302.34751 * 7 6 5 9 9 N 1.46844 * 109.52382 * 59.17582 * 8 7 6 10 10 C 1.46898 * 111.00093 * 174.16225 * 9 8 7 11 11 C 1.50701 * 109.47135 * 63.79459 * 10 9 8 12 12 O 1.21276 * 119.99855 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99780 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00273 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99533 * 180.02562 * 13 11 10 16 16 C 1.50695 * 109.47558 * 89.99478 * 15 13 11 17 17 H 1.08003 * 120.00109 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00069 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99870 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 90.00003 * 20 18 16 22 22 H 1.48501 * 109.46986 * 209.99781 * 20 18 16 23 23 H 1.48499 * 109.47095 * 330.00026 * 20 18 16 24 24 H 1.09007 * 109.46746 * 305.56709 * 1 2 3 25 25 H 1.08998 * 109.47596 * 65.56394 * 1 2 3 26 26 H 1.09003 * 109.46716 * 185.56972 * 1 2 3 27 27 H 1.08996 * 109.47188 * 240.00777 * 2 1 3 28 28 H 1.08996 * 109.47161 * 120.00176 * 2 1 3 29 29 H 1.09000 * 109.50268 * 60.86347 * 5 3 2 30 30 H 1.09001 * 109.52978 * 300.76329 * 5 3 2 31 31 H 1.09006 * 109.52346 * 297.74610 * 6 5 3 32 32 H 1.08998 * 109.52174 * 177.55987 * 6 5 3 33 33 H 1.08998 * 109.50378 * 182.40372 * 7 6 5 34 34 H 1.09005 * 109.50124 * 62.28906 * 7 6 5 35 35 H 1.09001 * 109.46199 * 179.19106 * 8 7 6 36 36 H 1.09002 * 109.46262 * 299.16263 * 8 7 6 37 37 H 1.08998 * 109.47380 * 183.79328 * 10 9 8 38 38 H 1.09002 * 109.47005 * 303.79372 * 10 9 8 39 39 H 1.08996 * 109.46848 * 90.00222 * 14 13 11 40 40 H 1.08995 * 109.46858 * 210.00363 * 14 13 11 41 41 H 1.09003 * 109.46679 * 330.00761 * 14 13 11 42 42 H 1.09007 * 109.46543 * 209.99369 * 15 13 11 43 43 H 1.09001 * 109.47403 * 329.98905 * 15 13 11 44 44 H 0.97004 * 119.99748 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9737 0.8576 5 6 1.6012 2.1386 -1.2904 6 6 2.1307 3.5752 -1.2951 7 6 3.6555 3.5494 -1.1579 8 6 4.0347 2.8125 0.1286 9 7 3.5061 1.4432 0.0839 10 6 3.9675 0.6627 1.2397 11 6 3.4192 1.2683 2.5060 12 8 2.7138 2.2533 2.4512 13 7 3.7135 0.7157 3.6996 14 6 4.5661 -0.4739 3.7659 15 6 3.1799 1.3041 4.9306 16 6 1.8483 0.6758 5.2516 17 1 1.4404 -0.0859 4.6038 18 6 1.1512 1.0727 6.3731 19 7 1.6487 1.9992 7.1628 20 14 -0.4991 0.2934 6.7713 21 1 -0.2886 -0.9005 7.6290 22 1 -1.3497 1.2756 7.4903 23 1 -1.1708 -0.1145 5.5113 24 1 -0.3633 0.5978 0.8360 25 1 -0.3634 0.4251 -0.9356 26 1 -0.3633 -1.0229 0.0997 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5126 2.1517 -1.3447 30 1 2.0020 1.6002 -2.1492 31 1 1.6991 4.1253 -0.4588 32 1 1.8574 4.0611 -2.2317 33 1 4.0346 4.5705 -1.1177 34 1 4.0892 3.0330 -2.0144 35 1 5.1203 2.7798 0.2219 36 1 3.6123 3.3371 0.9856 37 1 3.6172 -0.3652 1.1472 38 1 5.0570 0.6737 1.2738 39 1 5.6087 -0.1690 3.8550 40 1 4.2872 -1.0728 4.6328 41 1 4.4365 -1.0646 2.8590 42 1 3.8746 1.1225 5.7508 43 1 3.0516 2.3779 4.7942 44 1 1.1580 2.2787 7.9516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034652463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:07 Heat of formation + Delta-G solvation = -39.985414 kcal Electronic energy + Delta-G solvation = -22254.985514 eV Core-core repulsion = 19206.955120 eV Total energy + Delta-G solvation = -3048.030394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09941 -37.86519 -34.83230 -33.79065 -33.21871 -32.54925 -29.01387 -28.42447 -26.84474 -25.51952 -24.11655 -23.25218 -22.07126 -20.58585 -19.57255 -18.33575 -16.56970 -16.26635 -15.88918 -15.38184 -14.91700 -14.86312 -14.26750 -14.05401 -13.99571 -13.44578 -13.07639 -12.83844 -12.65212 -12.33402 -12.17816 -12.16545 -11.75477 -11.55821 -11.40260 -11.25220 -11.20188 -10.93514 -10.87840 -10.59966 -10.52231 -10.37245 -10.15423 -10.05507 -9.82571 -9.63948 -9.52786 -8.45533 -7.64135 -7.62533 -6.06082 -4.10833 3.27963 3.33926 3.36153 3.41555 4.00783 4.13605 4.43231 4.95295 5.00981 5.08649 5.21267 5.26913 5.30950 5.39516 5.48642 5.56575 5.65763 5.66388 5.73249 5.78735 5.88266 5.92025 5.94803 6.05133 6.08821 6.14906 6.19571 6.22180 6.29592 6.30120 6.38290 6.48188 6.53486 6.75421 7.01261 7.27889 7.38833 7.43215 7.53766 7.90229 8.21952 8.40995 8.88421 9.07761 9.54316 11.01970 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005942 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.102939 B = 4711.007443 C = 5160.190491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.064 3.936 4 H 0.086 0.914 5 C -0.107 4.107 6 C -0.121 4.121 7 C -0.111 4.111 8 C 0.039 3.961 9 N -0.511 5.511 10 C 0.029 3.971 11 C 0.474 3.526 12 O -0.539 6.539 13 N -0.601 5.601 14 C 0.083 3.917 15 C 0.244 3.756 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.030 0.970 43 H 0.042 0.958 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -2.997 -15.162 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.104 0.896 5 C -0.144 4.144 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.089 4.089 9 N -0.234 5.234 10 C -0.103 4.103 11 C 0.260 3.740 12 O -0.418 6.418 13 N -0.334 5.334 14 C -0.062 4.062 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.281 -2.590 -15.436 16.227 hybrid contribution -1.118 -0.191 1.212 1.660 sum 3.163 -2.781 -14.225 14.835 Atomic orbital electron populations 1.21766 0.95746 1.01450 1.01809 1.21602 0.95790 0.96427 1.01685 1.21999 0.87255 0.96199 0.98965 0.89644 1.21605 0.99862 0.95377 0.97594 1.21566 0.95958 0.97092 1.01266 1.21518 0.96013 0.99362 0.97959 1.22264 0.98958 0.89163 0.98488 1.62425 1.10251 1.13686 1.37079 1.22374 1.01053 0.99283 0.87562 1.21654 0.81689 0.84959 0.85713 1.90555 1.38258 1.26760 1.86240 1.48325 1.48561 1.28198 1.08301 1.21642 0.93695 0.88365 1.02462 1.19267 0.93639 0.95191 0.79438 1.21404 1.04252 1.21951 1.08655 0.92574 1.24937 0.98037 0.95061 0.96089 1.69933 1.38828 1.29856 1.14795 0.86516 0.83699 0.78936 0.78408 1.20611 1.21076 1.19898 0.92360 0.92835 0.92996 0.91939 0.92118 0.91811 0.91961 0.91954 0.92491 0.92083 0.91864 0.91852 0.91416 0.88106 0.88839 0.93708 0.90786 0.92425 0.95205 0.93999 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.49 37.16 0.35 -1.69 16 2 C -0.12 -1.69 5.11 -26.73 -0.14 -1.82 16 3 C 0.06 1.00 1.48 -67.72 -0.10 0.90 16 4 H 0.09 1.71 5.54 -51.93 -0.29 1.42 16 5 C -0.11 -1.42 5.08 -26.65 -0.14 -1.55 16 6 C -0.12 -1.57 6.00 -26.61 -0.16 -1.72 16 7 C -0.11 -1.40 6.09 -26.65 -0.16 -1.57 16 8 C 0.04 0.59 5.06 -3.84 -0.02 0.57 16 9 N -0.51 -7.78 4.69 -228.12 -1.07 -8.85 16 10 C 0.03 0.44 3.88 -4.98 -0.02 0.42 16 11 C 0.47 9.61 7.06 -10.98 -0.08 9.53 16 12 O -0.54 -12.93 11.19 5.56 0.06 -12.86 16 13 N -0.60 -12.65 2.86 -182.95 -0.52 -13.17 16 14 C 0.08 1.29 10.24 59.85 0.61 1.91 16 15 C 0.24 6.40 5.16 -5.19 -0.03 6.37 16 16 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.64 6.83 -51.93 -0.35 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.95 6.09 -51.93 -0.32 0.63 16 29 H 0.06 0.80 6.69 -51.93 -0.35 0.46 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.07 1.26 5.81 -51.93 -0.30 0.96 16 37 H 0.10 1.41 5.37 -51.93 -0.28 1.14 16 38 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 42 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 43 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -31.69 334.28 -8.70 -40.39 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.63 Total: 0.72 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.29 Total: -2.19 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.86 Total: -48.01 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.06 Total: -12.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.69 -8.70 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.407 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds