Wall clock time and date at job start Mon Mar 30 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46922 * 2 1 4 4 H 1.08998 * 109.46129 * 56.56020 * 3 2 1 5 5 C 1.53040 * 109.46518 * 296.58168 * 3 2 1 6 6 C 1.53113 * 109.27748 * 180.80652 * 5 3 2 7 7 C 1.53117 * 109.16485 * 57.65032 * 6 5 3 8 8 C 1.53033 * 109.28006 * 302.34751 * 7 6 5 9 9 N 1.46844 * 109.52382 * 59.17582 * 8 7 6 10 10 C 1.46898 * 111.00093 * 174.16225 * 9 8 7 11 11 C 1.50701 * 109.47135 * 63.79459 * 10 9 8 12 12 O 1.21276 * 119.99855 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99780 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00273 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99533 * 180.02562 * 13 11 10 16 16 C 1.50695 * 109.47558 * 89.99478 * 15 13 11 17 17 H 1.08003 * 120.00109 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00069 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99870 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47288 * 90.00003 * 20 18 16 22 22 H 1.48501 * 109.46986 * 209.99781 * 20 18 16 23 23 H 1.48499 * 109.47095 * 330.00026 * 20 18 16 24 24 H 1.09007 * 109.46746 * 305.56709 * 1 2 3 25 25 H 1.08998 * 109.47596 * 65.56394 * 1 2 3 26 26 H 1.09003 * 109.46716 * 185.56972 * 1 2 3 27 27 H 1.08996 * 109.47188 * 240.00777 * 2 1 3 28 28 H 1.08996 * 109.47161 * 120.00176 * 2 1 3 29 29 H 1.09000 * 109.50268 * 60.86347 * 5 3 2 30 30 H 1.09001 * 109.52978 * 300.76329 * 5 3 2 31 31 H 1.09006 * 109.52346 * 297.74610 * 6 5 3 32 32 H 1.08998 * 109.52174 * 177.55987 * 6 5 3 33 33 H 1.08998 * 109.50378 * 182.40372 * 7 6 5 34 34 H 1.09005 * 109.50124 * 62.28906 * 7 6 5 35 35 H 1.09001 * 109.46199 * 179.19106 * 8 7 6 36 36 H 1.09002 * 109.46262 * 299.16263 * 8 7 6 37 37 H 1.08998 * 109.47380 * 183.79328 * 10 9 8 38 38 H 1.09002 * 109.47005 * 303.79372 * 10 9 8 39 39 H 1.08996 * 109.46848 * 90.00222 * 14 13 11 40 40 H 1.08995 * 109.46858 * 210.00363 * 14 13 11 41 41 H 1.09003 * 109.46679 * 330.00761 * 14 13 11 42 42 H 1.09007 * 109.46543 * 209.99369 * 15 13 11 43 43 H 1.09001 * 109.47403 * 329.98905 * 15 13 11 44 44 H 0.97004 * 119.99748 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9737 0.8576 5 6 1.6012 2.1386 -1.2904 6 6 2.1307 3.5752 -1.2951 7 6 3.6555 3.5494 -1.1579 8 6 4.0347 2.8125 0.1286 9 7 3.5061 1.4432 0.0839 10 6 3.9675 0.6627 1.2397 11 6 3.4192 1.2683 2.5060 12 8 2.7138 2.2533 2.4512 13 7 3.7135 0.7157 3.6996 14 6 4.5661 -0.4739 3.7659 15 6 3.1799 1.3041 4.9306 16 6 1.8483 0.6758 5.2516 17 1 1.4404 -0.0859 4.6038 18 6 1.1512 1.0727 6.3731 19 7 1.6487 1.9992 7.1628 20 14 -0.4991 0.2934 6.7713 21 1 -0.2886 -0.9005 7.6290 22 1 -1.3497 1.2756 7.4903 23 1 -1.1708 -0.1145 5.5113 24 1 -0.3633 0.5978 0.8360 25 1 -0.3634 0.4251 -0.9356 26 1 -0.3633 -1.0229 0.0997 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 0.5126 2.1517 -1.3447 30 1 2.0020 1.6002 -2.1492 31 1 1.6991 4.1253 -0.4588 32 1 1.8574 4.0611 -2.2317 33 1 4.0346 4.5705 -1.1177 34 1 4.0892 3.0330 -2.0144 35 1 5.1203 2.7798 0.2219 36 1 3.6123 3.3371 0.9856 37 1 3.6172 -0.3652 1.1472 38 1 5.0570 0.6737 1.2738 39 1 5.6087 -0.1690 3.8550 40 1 4.2872 -1.0728 4.6328 41 1 4.4365 -1.0646 2.8590 42 1 3.8746 1.1225 5.7508 43 1 3.0516 2.3779 4.7942 44 1 1.1580 2.2787 7.9516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034652463.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:06 Heat of formation + Delta-G solvation = -61.048541 kcal Electronic energy + Delta-G solvation = -22255.898879 eV Core-core repulsion = 19206.955120 eV Total energy + Delta-G solvation = -3048.943760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50119 -39.28171 -36.55976 -34.93023 -34.80310 -34.29566 -30.35224 -30.04472 -28.25162 -27.14301 -25.26784 -24.92795 -23.53818 -21.74709 -20.82266 -19.87398 -18.72895 -17.81190 -17.28545 -16.79666 -16.63366 -16.11938 -15.86295 -15.48986 -15.12142 -14.86036 -14.48094 -14.14951 -13.91051 -13.86019 -13.56632 -13.50888 -13.40525 -13.13205 -12.81085 -12.68018 -12.60226 -12.53491 -12.36225 -12.23666 -11.99512 -11.77303 -11.59128 -11.48361 -11.18230 -11.13059 -10.91037 -10.67981 -9.39155 -9.04680 -8.25794 -6.40873 1.32126 1.35085 1.45289 1.81766 2.30361 2.47892 2.92308 3.03285 3.79285 3.84475 3.92489 4.01822 4.16500 4.31497 4.36053 4.39101 4.49627 4.53839 4.56080 4.65808 4.71276 4.80210 4.87477 4.91748 4.94360 4.97223 5.02092 5.06887 5.14583 5.15299 5.17025 5.20232 5.27226 5.36563 5.40115 5.52214 5.59948 5.83248 6.02938 6.03821 6.15082 6.66916 6.80013 7.25609 7.49591 8.81009 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.005942 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.102939 B = 4711.007443 C = 5160.190491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.063 3.937 4 H 0.034 0.966 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.105 4.105 8 C 0.037 3.963 9 N -0.498 5.498 10 C 0.039 3.961 11 C 0.464 3.536 12 O -0.585 6.585 13 N -0.612 5.612 14 C 0.077 3.923 15 C 0.260 3.740 16 C -0.538 4.538 17 H 0.051 0.949 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.274 1.274 24 H 0.025 0.975 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.019 0.981 43 H -0.007 1.007 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -5.031 -17.574 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.045 4.045 4 H 0.052 0.948 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.143 4.143 8 C -0.091 4.091 9 N -0.220 5.220 10 C -0.092 4.092 11 C 0.252 3.748 12 O -0.466 6.466 13 N -0.344 5.344 14 C -0.065 4.065 15 C 0.138 3.862 16 C -0.577 4.577 17 H 0.069 0.931 18 C -0.192 4.192 19 N -0.569 5.569 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.198 1.198 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.037 0.963 43 H 0.011 0.989 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.714 -4.656 -17.867 19.056 hybrid contribution -1.209 0.494 1.961 2.356 sum 3.505 -4.162 -15.906 16.811 Atomic orbital electron populations 1.21751 0.95473 1.01819 1.01479 1.21589 0.96077 0.95404 1.02039 1.21944 0.87398 0.96849 0.98359 0.94758 1.21591 1.00273 0.95391 0.96723 1.21585 0.96182 0.96901 1.01339 1.21507 0.95778 0.99891 0.97085 1.22292 0.99519 0.88997 0.98280 1.62557 1.09840 1.13565 1.36028 1.22530 1.02571 0.99681 0.84419 1.22724 0.80865 0.84333 0.86835 1.90566 1.40174 1.28894 1.86984 1.48377 1.49310 1.29804 1.06895 1.21932 0.93973 0.86600 1.03967 1.18689 0.93208 0.92665 0.81598 1.21653 1.05300 1.21947 1.08751 0.93093 1.25866 1.01957 0.95492 0.95913 1.70055 1.40497 1.31070 1.15306 0.85441 0.78728 0.78551 0.78278 1.18600 1.20617 1.19837 0.95621 0.90840 0.91634 0.89334 0.93693 0.91405 0.89934 0.94863 0.89923 0.91056 0.89881 0.90362 0.95775 0.86007 0.85765 0.91083 0.91721 0.88740 0.96264 0.98870 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.49 71.98 0.68 -3.20 16 2 C -0.11 -3.08 5.11 30.60 0.16 -2.92 16 3 C 0.06 1.94 1.48 44.94 0.07 2.01 16 4 H 0.03 1.45 5.54 -2.39 -0.01 1.44 16 5 C -0.10 -2.54 5.08 30.65 0.16 -2.38 16 6 C -0.12 -3.03 6.00 30.67 0.18 -2.85 16 7 C -0.10 -2.47 6.09 30.64 0.19 -2.28 16 8 C 0.04 1.10 5.06 86.32 0.44 1.53 16 9 N -0.50 -14.35 4.69 -875.65 -4.11 -18.46 16 10 C 0.04 1.13 3.88 85.56 0.33 1.46 16 11 C 0.46 19.23 7.06 87.66 0.62 19.85 16 12 O -0.58 -29.89 11.19 -3.02 -0.03 -29.92 16 13 N -0.61 -26.22 2.86 -851.12 -2.43 -28.65 16 14 C 0.08 2.30 10.24 127.77 1.31 3.61 16 15 C 0.26 14.37 5.16 85.63 0.44 14.81 16 16 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 17 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 20 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 24 H 0.02 0.81 8.14 -2.38 -0.02 0.80 16 25 H 0.07 1.61 6.83 -2.39 -0.02 1.59 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.34 6.09 -2.39 -0.01 1.33 16 29 H 0.07 1.61 6.69 -2.39 -0.02 1.59 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.02 0.94 5.81 -2.39 -0.01 0.93 16 37 H 0.12 3.04 5.37 -2.39 -0.01 3.03 16 38 H 0.12 2.85 8.07 -2.39 -0.02 2.83 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 41 H 0.09 2.10 6.44 -2.39 -0.02 2.08 16 42 H 0.02 1.08 8.07 -2.38 -0.02 1.07 16 43 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.84 334.28 1.97 -71.88 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.96 Total: 15.30 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.27 Total: -0.83 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.26 Total: -104.11 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.03 Total: -29.92 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.84 1.97 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034652463.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.830 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds