Wall clock time and date at job start Mon Mar 30 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47427 * 2 1 4 4 H 1.09005 * 109.50059 * 55.07533 * 3 2 1 5 5 C 1.53128 * 109.50397 * 295.00357 * 3 2 1 6 6 C 1.53119 * 109.16016 * 182.40421 * 5 3 2 7 7 C 1.53032 * 109.28013 * 57.65051 * 6 5 3 8 8 N 1.46846 * 109.52813 * 300.82331 * 7 6 5 9 9 C 1.46893 * 111.00384 * 185.84094 * 8 7 6 10 10 C 1.50699 * 109.47329 * 66.04318 * 9 8 7 11 11 O 1.21275 * 120.00067 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99751 * 0.02562 * 12 10 9 14 14 C 1.46500 * 119.99523 * 179.97438 * 12 10 9 15 15 C 1.50706 * 109.46956 * 269.99701 * 14 12 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 C 1.46841 * 111.19730 * 61.73489 * 8 7 6 24 24 H 1.09007 * 109.47320 * 59.99520 * 1 2 3 25 25 H 1.08993 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47364 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.46655 * 239.99953 * 2 1 3 28 28 H 1.08993 * 109.47196 * 120.00415 * 2 1 3 29 29 H 1.09001 * 109.52360 * 62.49808 * 5 3 2 30 30 H 1.08999 * 109.51793 * 302.30673 * 5 3 2 31 31 H 1.09001 * 109.50313 * 297.70870 * 6 5 3 32 32 H 1.08999 * 109.53317 * 177.61359 * 6 5 3 33 33 H 1.09003 * 109.46636 * 180.80177 * 7 6 5 34 34 H 1.09005 * 109.46270 * 60.83804 * 7 6 5 35 35 H 1.09005 * 109.46799 * 306.04354 * 9 8 7 36 36 H 1.09007 * 109.47237 * 186.04573 * 9 8 7 37 37 H 1.09000 * 109.46553 * 269.99227 * 13 12 10 38 38 H 1.08991 * 109.47319 * 29.99724 * 13 12 10 39 39 H 1.09005 * 109.46744 * 149.99726 * 13 12 10 40 40 H 1.09000 * 109.46835 * 150.00337 * 14 12 10 41 41 H 1.08992 * 109.47101 * 30.00416 * 14 12 10 42 42 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 43 43 H 1.08999 * 109.46139 * 58.28215 * 23 8 7 44 44 H 1.09003 * 109.46404 * 178.24471 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9816 0.8425 5 6 1.6353 2.1278 -1.3081 6 6 2.2007 3.5507 -1.3258 7 6 3.7216 3.4921 -1.1666 8 7 4.0573 2.8285 0.0996 9 6 5.5036 2.8771 0.3522 10 6 5.9272 4.3064 0.5732 11 8 5.1053 5.1969 0.5245 12 7 7.2196 4.5952 0.8238 13 6 8.2127 3.5196 0.8810 14 6 7.6314 5.9847 1.0381 15 6 8.0107 6.6054 -0.2818 16 1 7.9506 6.0232 -1.1895 17 6 8.4344 7.9165 -0.3305 18 7 8.5081 8.6253 0.7748 19 14 8.9039 8.6861 -1.9666 20 1 9.3226 10.0942 -1.7493 21 1 10.0272 7.9235 -2.5683 22 1 7.7358 8.6524 -2.8829 23 6 3.5656 1.4450 0.1207 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5482 2.1669 -1.3777 30 1 2.0354 1.5663 -2.1524 31 1 1.7706 4.1234 -0.5042 32 1 1.9521 4.0299 -2.2728 33 1 4.1259 4.5043 -1.1645 34 1 4.1522 2.9310 -1.9960 35 1 6.0363 2.4689 -0.5067 36 1 5.7376 2.2876 1.2387 37 1 8.2870 3.1478 1.9029 38 1 7.9078 2.7082 0.2203 39 1 9.1821 3.9029 0.5623 40 1 8.4885 6.0100 1.7110 41 1 6.8066 6.5442 1.4791 42 1 8.2640 8.2257 1.6243 43 1 3.9969 0.8935 -0.7146 44 1 3.8565 0.9704 1.0579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035238540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:54 Heat of formation + Delta-G solvation = -48.825441 kcal Electronic energy + Delta-G solvation = -21317.075268 eV Core-core repulsion = 18268.661542 eV Total energy + Delta-G solvation = -3048.413726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.71864 -38.37987 -35.23406 -34.59587 -32.87988 -32.28423 -29.55921 -28.21376 -26.81593 -25.36757 -24.21079 -23.12566 -22.42003 -21.00365 -19.68693 -18.53468 -16.92596 -16.42188 -15.87935 -15.39985 -14.95973 -14.88542 -14.29245 -14.13460 -14.02914 -13.70909 -13.50289 -13.08717 -12.77956 -12.59739 -12.41026 -12.22111 -12.06190 -11.85040 -11.50440 -11.36784 -11.29959 -11.18094 -10.91968 -10.87058 -10.62243 -10.57422 -10.26191 -10.17902 -10.09095 -9.08939 -8.89778 -8.37554 -8.09369 -7.58258 -6.37240 -4.09240 3.39833 3.43909 3.47429 3.61876 3.65779 4.21688 4.54597 4.62331 4.74072 4.78872 5.03711 5.13562 5.16162 5.25312 5.35599 5.37815 5.39395 5.43390 5.53340 5.59742 5.62587 5.64239 5.72330 5.73173 5.81400 5.85896 5.89142 5.96184 6.04160 6.13461 6.15202 6.23555 6.41545 6.48988 6.80566 7.09208 7.19647 7.27255 7.44307 8.05670 8.33018 8.44538 8.79358 9.08837 9.60700 11.00029 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030956 B = 0.004034 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.304482 B = 6939.500748 C = 7427.186657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.080 0.920 5 C -0.115 4.115 6 C -0.114 4.114 7 C 0.050 3.950 8 N -0.520 5.520 9 C 0.040 3.960 10 C 0.506 3.494 11 O -0.523 6.523 12 N -0.602 5.602 13 C 0.085 3.915 14 C 0.237 3.763 15 C -0.606 4.606 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 1.071 2.929 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.022 0.978 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.034 0.966 42 H 0.268 0.732 43 H 0.029 0.971 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 -18.559 -2.177 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.077 4.077 8 N -0.244 5.244 9 C -0.091 4.091 10 C 0.291 3.709 11 O -0.399 6.399 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.117 3.883 15 C -0.645 4.645 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.066 4.066 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.299 -16.400 -2.519 19.529 hybrid contribution 0.085 -2.046 0.042 2.048 sum -10.213 -18.446 -2.477 21.230 Atomic orbital electron populations 1.21795 0.95806 1.01284 1.02054 1.21527 0.95994 0.96296 1.01768 1.21208 0.94624 0.95572 0.98916 0.90202 1.21692 1.00375 0.96292 0.96938 1.21540 0.95179 0.96485 1.01962 1.22277 0.96182 1.01182 0.88081 1.61519 1.12157 1.15525 1.35227 1.21993 0.89121 0.96293 1.01740 1.20178 0.82489 0.90154 0.78030 1.90632 1.50921 1.48384 1.49924 1.47972 1.06441 1.09331 1.69833 1.21623 0.94013 0.90313 1.00011 1.19312 0.95024 0.76601 0.97359 1.22246 1.48866 0.99782 0.93583 0.93188 1.25809 0.94439 0.93907 1.04337 1.70799 1.45336 1.39293 0.99128 0.83513 0.76326 0.76225 0.74014 1.20639 1.21499 1.21407 1.22132 0.95212 0.88827 1.00439 0.92504 0.93044 0.92678 0.92238 0.92021 0.91840 0.92594 0.90917 0.91752 0.88222 0.95935 0.92679 0.88718 0.93734 0.92539 0.90813 0.96180 0.94818 0.92201 0.95253 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.99 5.41 -26.73 -0.14 -1.13 16 3 C -0.08 -0.90 2.35 -90.54 -0.21 -1.11 16 4 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.12 -1.24 4.98 -26.60 -0.13 -1.38 16 6 C -0.11 -1.52 6.09 -26.65 -0.16 -1.68 16 7 C 0.05 0.80 5.11 -3.84 -0.02 0.78 16 8 N -0.52 -8.07 4.39 -236.12 -1.04 -9.11 16 9 C 0.04 0.63 4.00 -4.98 -0.02 0.61 16 10 C 0.51 10.81 7.35 -10.98 -0.08 10.73 16 11 O -0.52 -13.39 13.93 5.56 0.08 -13.31 16 12 N -0.60 -13.09 2.86 -182.96 -0.52 -13.62 16 13 C 0.08 1.36 10.24 59.85 0.61 1.98 16 14 C 0.24 6.28 4.47 -5.19 -0.02 6.26 16 15 C -0.61 -17.59 9.39 -34.44 -0.32 -17.91 16 16 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 17 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 18 N -0.91 -28.08 13.65 55.43 0.76 -27.32 16 19 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.06 0.73 4.74 -3.84 -0.02 0.72 16 24 H 0.06 0.43 6.62 -51.92 -0.34 0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.99 5.80 -51.93 -0.30 1.69 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 36 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.07 1.23 8.07 -51.93 -0.42 0.82 16 40 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 41 H 0.03 1.00 7.29 -51.93 -0.38 0.62 16 42 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -33.60 342.10 -8.82 -42.42 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.90 Total: -2.47 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.26 Total: -2.48 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.80 Total: -50.05 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.60 -8.82 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035238540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.409 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds