Wall clock time and date at job start Mon Mar 30 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47427 * 2 1 4 4 H 1.09005 * 109.50059 * 55.07533 * 3 2 1 5 5 C 1.53128 * 109.50397 * 295.00357 * 3 2 1 6 6 C 1.53119 * 109.16016 * 182.40421 * 5 3 2 7 7 C 1.53032 * 109.28013 * 57.65051 * 6 5 3 8 8 N 1.46846 * 109.52813 * 300.82331 * 7 6 5 9 9 C 1.46893 * 111.00384 * 185.84094 * 8 7 6 10 10 C 1.50699 * 109.47329 * 66.04318 * 9 8 7 11 11 O 1.21275 * 120.00067 * 359.97438 * 10 9 8 12 12 N 1.34785 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99751 * 0.02562 * 12 10 9 14 14 C 1.46500 * 119.99523 * 179.97438 * 12 10 9 15 15 C 1.50706 * 109.46956 * 269.99701 * 14 12 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 C 1.46841 * 111.19730 * 61.73489 * 8 7 6 24 24 H 1.09007 * 109.47320 * 59.99520 * 1 2 3 25 25 H 1.08993 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47364 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.46655 * 239.99953 * 2 1 3 28 28 H 1.08993 * 109.47196 * 120.00415 * 2 1 3 29 29 H 1.09001 * 109.52360 * 62.49808 * 5 3 2 30 30 H 1.08999 * 109.51793 * 302.30673 * 5 3 2 31 31 H 1.09001 * 109.50313 * 297.70870 * 6 5 3 32 32 H 1.08999 * 109.53317 * 177.61359 * 6 5 3 33 33 H 1.09003 * 109.46636 * 180.80177 * 7 6 5 34 34 H 1.09005 * 109.46270 * 60.83804 * 7 6 5 35 35 H 1.09005 * 109.46799 * 306.04354 * 9 8 7 36 36 H 1.09007 * 109.47237 * 186.04573 * 9 8 7 37 37 H 1.09000 * 109.46553 * 269.99227 * 13 12 10 38 38 H 1.08991 * 109.47319 * 29.99724 * 13 12 10 39 39 H 1.09005 * 109.46744 * 149.99726 * 13 12 10 40 40 H 1.09000 * 109.46835 * 150.00337 * 14 12 10 41 41 H 1.08992 * 109.47101 * 30.00416 * 14 12 10 42 42 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 43 43 H 1.08999 * 109.46139 * 58.28215 * 23 8 7 44 44 H 1.09003 * 109.46404 * 178.24471 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6067 1.9816 0.8425 5 6 1.6353 2.1278 -1.3081 6 6 2.2007 3.5507 -1.3258 7 6 3.7216 3.4921 -1.1666 8 7 4.0573 2.8285 0.0996 9 6 5.5036 2.8771 0.3522 10 6 5.9272 4.3064 0.5732 11 8 5.1053 5.1969 0.5245 12 7 7.2196 4.5952 0.8238 13 6 8.2127 3.5196 0.8810 14 6 7.6314 5.9847 1.0381 15 6 8.0107 6.6054 -0.2818 16 1 7.9506 6.0232 -1.1895 17 6 8.4344 7.9165 -0.3305 18 7 8.5081 8.6253 0.7748 19 14 8.9039 8.6861 -1.9666 20 1 9.3226 10.0942 -1.7493 21 1 10.0272 7.9235 -2.5683 22 1 7.7358 8.6524 -2.8829 23 6 3.5656 1.4450 0.1207 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5482 2.1669 -1.3777 30 1 2.0354 1.5663 -2.1524 31 1 1.7706 4.1234 -0.5042 32 1 1.9521 4.0299 -2.2728 33 1 4.1259 4.5043 -1.1645 34 1 4.1522 2.9310 -1.9960 35 1 6.0363 2.4689 -0.5067 36 1 5.7376 2.2876 1.2387 37 1 8.2870 3.1478 1.9029 38 1 7.9078 2.7082 0.2203 39 1 9.1821 3.9029 0.5623 40 1 8.4885 6.0100 1.7110 41 1 6.8066 6.5442 1.4791 42 1 8.2640 8.2257 1.6243 43 1 3.9969 0.8935 -0.7146 44 1 3.8565 0.9704 1.0579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035238540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:54 Heat of formation + Delta-G solvation = -71.229318 kcal Electronic energy + Delta-G solvation = -21318.046773 eV Core-core repulsion = 18268.661542 eV Total energy + Delta-G solvation = -3049.385231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10269 -39.69003 -36.82144 -35.83464 -34.96355 -33.35472 -30.56766 -29.81143 -28.23700 -27.02920 -25.38161 -24.61451 -23.77013 -21.98923 -20.63252 -20.16819 -19.04323 -17.97087 -17.25971 -16.81304 -16.34809 -15.83553 -15.66991 -15.56137 -15.28811 -15.08325 -14.66539 -14.23890 -14.15167 -13.90086 -13.83890 -13.58314 -13.40475 -13.25944 -12.93139 -12.86423 -12.61457 -12.48859 -12.25367 -12.03610 -11.96875 -11.81216 -11.48724 -11.34663 -11.17337 -11.03377 -10.63684 -10.52089 -9.45818 -9.25974 -8.70846 -6.47378 1.47339 1.56780 1.75872 1.78531 2.16684 2.52327 2.95366 3.08064 3.65254 3.77573 3.88899 3.95420 4.12876 4.19209 4.27791 4.37954 4.38827 4.44937 4.49411 4.59460 4.64348 4.67969 4.73443 4.75480 4.79936 4.86255 4.93551 4.98324 4.99320 5.07053 5.13607 5.24971 5.25859 5.32153 5.51209 5.54642 5.58727 5.80423 5.95400 6.12511 6.19102 6.42746 6.70170 7.28735 7.44626 8.63396 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030956 B = 0.004034 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.304482 B = 6939.500748 C = 7427.186657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.083 4.083 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.112 4.112 7 C 0.054 3.946 8 N -0.542 5.542 9 C 0.054 3.946 10 C 0.493 3.507 11 O -0.578 6.578 12 N -0.611 5.611 13 C 0.079 3.921 14 C 0.248 3.752 15 C -0.617 4.617 16 H 0.044 0.956 17 C -0.033 4.033 18 N -0.931 5.931 19 Si 1.119 2.881 20 H -0.278 1.278 21 H -0.260 1.260 22 H -0.280 1.280 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.018 0.982 41 H -0.010 1.010 42 H 0.255 0.745 43 H 0.044 0.956 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -21.686 -3.430 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.102 4.102 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.150 4.150 7 C -0.074 4.074 8 N -0.267 5.267 9 C -0.076 4.076 10 C 0.282 3.718 11 O -0.458 6.458 12 N -0.344 5.344 13 C -0.063 4.063 14 C 0.126 3.874 15 C -0.655 4.655 16 H 0.063 0.937 17 C -0.231 4.231 18 N -0.568 5.568 19 Si 0.940 3.060 20 H -0.204 1.204 21 H -0.185 1.185 22 H -0.206 1.206 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.008 0.992 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.254 -19.602 -3.755 22.439 hybrid contribution 0.045 -1.088 0.489 1.193 sum -10.209 -20.690 -3.266 23.302 Atomic orbital electron populations 1.21799 0.95356 1.01989 1.01841 1.21471 0.96323 0.94472 1.02587 1.21202 0.93919 0.96998 0.98044 0.91890 1.21652 1.01093 0.94230 0.97564 1.21517 0.93597 0.98445 1.01413 1.22116 0.97587 0.98734 0.88956 1.61472 1.12092 1.18058 1.35055 1.21933 0.89709 0.91984 1.04003 1.21320 0.81641 0.92354 0.76485 1.90609 1.52420 1.50671 1.52107 1.48057 1.08081 1.08548 1.69710 1.21933 0.92140 0.89386 1.02818 1.18829 0.93053 0.79500 0.96054 1.22536 1.48514 1.00225 0.94241 0.93746 1.27400 0.93836 0.94836 1.06987 1.70923 1.46971 1.39624 0.99316 0.82924 0.77188 0.75827 0.70108 1.20357 1.18493 1.20598 1.22254 0.95815 0.86575 1.01820 0.92496 0.91890 0.93181 0.91327 0.91252 0.90506 0.91455 0.93110 0.91104 0.93169 0.94820 0.90421 0.85437 0.90834 0.88818 0.91776 0.96416 0.99187 0.93581 0.93797 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 71.98 0.70 -1.22 16 2 C -0.11 -1.49 5.41 30.59 0.17 -1.33 16 3 C -0.08 -1.56 2.35 -10.74 -0.03 -1.59 16 4 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 5 C -0.11 -2.10 4.98 30.68 0.15 -1.95 16 6 C -0.11 -2.98 6.09 30.64 0.19 -2.79 16 7 C 0.05 1.72 5.11 86.32 0.44 2.16 16 8 N -0.54 -16.13 4.39 -900.96 -3.96 -20.09 16 9 C 0.05 1.60 4.00 85.56 0.34 1.94 16 10 C 0.49 21.32 7.35 87.66 0.64 21.96 16 11 O -0.58 -31.24 13.93 -3.02 -0.04 -31.28 16 12 N -0.61 -26.69 2.86 -851.13 -2.43 -29.12 16 13 C 0.08 2.38 10.24 127.77 1.31 3.69 16 14 C 0.25 13.68 4.47 85.63 0.38 14.07 16 15 C -0.62 -36.72 9.39 25.60 0.24 -36.48 16 16 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 17 C -0.03 -1.94 5.46 84.66 0.46 -1.48 16 18 N -0.93 -59.18 13.65 21.45 0.29 -58.88 16 19 Si 1.12 52.01 29.90 68.60 2.05 54.06 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 C 0.06 1.29 4.74 86.32 0.41 1.70 16 24 H 0.06 0.71 6.62 -2.38 -0.02 0.69 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.31 6.70 -2.39 -0.02 1.29 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 2.11 5.80 -2.39 -0.01 2.10 16 34 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.08 1.96 7.38 -2.38 -0.02 1.95 16 36 H 0.13 2.91 7.95 -2.38 -0.02 2.89 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.11 6.44 -2.39 -0.02 2.10 16 39 H 0.06 2.05 8.07 -2.38 -0.02 2.03 16 40 H 0.02 0.98 7.94 -2.39 -0.02 0.96 16 41 H -0.01 -0.63 7.29 -2.39 -0.02 -0.64 16 42 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 43 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 1.55 8.01 -2.39 -0.02 1.53 16 Total: -1.00 -77.60 342.10 2.36 -75.24 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.04 Total: 11.40 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.41 Total: -1.32 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -6.10 Total: -108.09 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.04 Total: -31.28 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.05 Total: 54.06 kcal Total: -77.60 2.36 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035238540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.008 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds