Wall clock time and date at job start Mon Mar 30 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09001 * 109.50304 * 304.99611 * 3 2 1 5 5 C 1.53124 * 109.50530 * 65.07560 * 3 2 1 6 6 C 1.53119 * 109.15887 * 177.55633 * 5 3 2 7 7 C 1.53042 * 109.31209 * 302.40756 * 6 5 3 8 8 N 1.46846 * 109.52311 * 59.15730 * 7 6 5 9 9 C 1.46902 * 110.99680 * 174.16590 * 8 7 6 10 10 C 1.50702 * 109.46965 * 294.20542 * 9 8 7 11 11 O 1.21284 * 119.99862 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00195 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99550 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00206 * 180.02562 * 12 10 9 15 15 C 1.50697 * 109.47436 * 90.00233 * 14 12 10 16 16 H 1.07999 * 119.99744 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99901 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00275 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47325 * 59.99998 * 19 17 15 21 21 H 1.48507 * 109.46945 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47265 * 299.99903 * 19 17 15 23 23 C 1.46847 * 111.19465 * 298.25948 * 8 7 6 24 24 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09003 * 109.52138 * 297.50126 * 5 3 2 30 30 H 1.08997 * 109.52165 * 57.68899 * 5 3 2 31 31 H 1.08998 * 109.50692 * 182.44538 * 6 5 3 32 32 H 1.09000 * 109.50624 * 62.36390 * 6 5 3 33 33 H 1.09008 * 109.45858 * 299.14014 * 7 6 5 34 34 H 1.09003 * 109.46217 * 179.17670 * 7 6 5 35 35 H 1.09000 * 109.47365 * 54.20918 * 9 8 7 36 36 H 1.08998 * 109.46999 * 174.21381 * 9 8 7 37 37 H 1.08997 * 109.47463 * 90.00274 * 13 12 10 38 38 H 1.09005 * 109.46632 * 210.00081 * 13 12 10 39 39 H 1.08999 * 109.47206 * 329.99781 * 13 12 10 40 40 H 1.09005 * 109.46679 * 210.00171 * 14 12 10 41 41 H 1.09004 * 109.47005 * 329.99729 * 14 12 10 42 42 H 0.96995 * 120.00461 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46785 * 301.72191 * 23 8 7 44 44 H 1.09011 * 109.44841 * 181.75586 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9820 -0.8417 5 6 1.6370 2.1273 1.3089 6 6 2.2032 3.5498 1.3269 7 6 3.7239 3.4914 1.1647 8 7 4.0571 2.8287 -0.1027 9 6 5.5030 2.8775 -0.3579 10 6 5.9272 4.3075 -0.5725 11 8 5.1059 5.1984 -0.5177 12 7 7.2190 4.5966 -0.8254 13 6 8.2108 3.5203 -0.8921 14 6 7.6315 5.9868 -1.0334 15 6 8.0151 6.6002 0.2885 16 1 7.9570 6.0133 1.1932 17 6 8.4392 7.9110 0.3430 18 7 8.5094 8.6258 -0.7586 19 14 8.9140 8.6716 1.9817 20 1 10.0390 7.9055 2.5756 21 1 9.3322 10.0808 1.7707 22 1 7.7488 8.6329 2.9016 23 6 3.5654 1.4451 -0.1236 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 0.5500 2.1663 1.3799 30 1 2.0381 1.5654 2.1524 31 1 1.9565 4.0278 2.2749 32 1 1.7716 4.1237 0.5069 33 1 4.1561 2.9297 1.9929 34 1 4.1281 4.5037 1.1625 35 1 6.0372 2.4645 0.4978 36 1 5.7347 2.2924 -1.2479 37 1 8.2818 3.1546 -1.9164 38 1 9.1816 3.9007 -0.5741 39 1 7.9072 2.7051 -0.2354 40 1 8.4867 6.0148 -1.7088 41 1 6.8058 6.5494 -1.4692 42 1 8.8081 9.5479 -0.7204 43 1 3.9984 0.8930 0.7105 44 1 3.8546 0.9714 -1.0618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035238541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:57 Heat of formation + Delta-G solvation = -45.428472 kcal Electronic energy + Delta-G solvation = -21282.730525 eV Core-core repulsion = 18234.464102 eV Total energy + Delta-G solvation = -3048.266422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65225 -38.29516 -35.13043 -34.49126 -32.66387 -32.23089 -29.53402 -28.38110 -26.84988 -25.51955 -24.22515 -23.11821 -22.30130 -20.92510 -19.64976 -18.30810 -16.52011 -16.35401 -15.83116 -15.21068 -15.01025 -14.91529 -14.36131 -14.15561 -14.01119 -13.90419 -13.37796 -13.04824 -12.66214 -12.43137 -12.34658 -12.14372 -11.98637 -11.80496 -11.44918 -11.33853 -11.22300 -11.13954 -10.90483 -10.84209 -10.58791 -10.54404 -10.25773 -10.14562 -10.08278 -9.61188 -8.79020 -8.41448 -8.03490 -7.57737 -6.02128 -4.07086 3.32507 3.37007 3.39092 3.51397 3.71195 4.28721 4.47100 4.65601 4.77304 4.82161 5.08445 5.17044 5.21520 5.28595 5.32852 5.40926 5.43493 5.48989 5.58195 5.63424 5.66854 5.71499 5.75181 5.76817 5.84225 5.91081 5.96661 5.99403 6.07102 6.18474 6.22221 6.26917 6.45698 6.52737 7.02749 7.22885 7.32059 7.49322 7.59433 7.94671 8.26265 8.48295 8.93144 9.18647 9.58050 11.05845 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.004021 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.321410 B = 6960.961863 C = 7449.458971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.084 4.084 4 H 0.080 0.920 5 C -0.115 4.115 6 C -0.114 4.114 7 C 0.050 3.950 8 N -0.520 5.520 9 C 0.039 3.961 10 C 0.505 3.495 11 O -0.523 6.523 12 N -0.606 5.606 13 C 0.084 3.916 14 C 0.247 3.753 15 C -0.526 4.526 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.029 0.971 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -18.001 1.843 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.077 4.077 8 N -0.244 5.244 9 C -0.093 4.093 10 C 0.291 3.709 11 O -0.399 6.399 12 N -0.339 5.339 13 C -0.060 4.060 14 C 0.128 3.872 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.066 4.066 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.605 -17.058 1.416 20.135 hybrid contribution 0.936 -0.065 1.534 1.798 sum -9.669 -17.123 2.950 19.884 Atomic orbital electron populations 1.21797 0.95837 1.01257 1.02045 1.21530 0.95966 0.96339 1.01755 1.21207 0.94693 0.95529 0.98894 0.90197 1.21690 1.00335 0.96334 0.96933 1.21542 0.95268 0.96450 1.01915 1.22285 0.96110 1.01271 0.88080 1.61534 1.12351 1.15450 1.35055 1.22014 0.89002 0.96547 1.01699 1.20153 0.82626 0.90032 0.78127 1.90633 1.50949 1.48364 1.49978 1.48167 1.06396 1.09756 1.69629 1.21621 0.94106 0.90349 0.99952 1.19255 0.96012 0.75137 0.96829 1.21399 1.44353 0.97024 0.93753 0.92641 1.24933 0.95612 0.96861 0.96682 1.69920 1.47236 1.09261 1.26971 0.86571 0.78816 0.78153 0.83937 1.20301 1.21161 1.20186 1.22132 0.95157 0.88914 1.00419 0.92520 0.92674 0.93070 0.92259 0.92019 0.91885 0.92633 0.91821 0.90904 0.96002 0.88104 0.92757 0.88751 0.93771 0.90809 0.92739 0.95105 0.93813 0.92665 0.95301 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.12 -1.00 5.41 -26.73 -0.14 -1.14 16 3 C -0.08 -0.90 2.35 -90.54 -0.21 -1.11 16 4 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.12 -1.25 4.98 -26.61 -0.13 -1.38 16 6 C -0.11 -1.52 6.09 -26.65 -0.16 -1.69 16 7 C 0.05 0.80 5.11 -3.83 -0.02 0.78 16 8 N -0.52 -8.06 4.40 -236.10 -1.04 -9.10 16 9 C 0.04 0.61 4.00 -4.97 -0.02 0.59 16 10 C 0.50 10.72 7.35 -10.99 -0.08 10.64 16 11 O -0.52 -13.33 13.90 5.55 0.08 -13.25 16 12 N -0.61 -13.07 2.86 -182.95 -0.52 -13.59 16 13 C 0.08 1.34 10.24 59.85 0.61 1.95 16 14 C 0.25 6.56 5.16 -5.20 -0.03 6.54 16 15 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.06 0.74 4.74 -3.84 -0.02 0.72 16 24 H 0.06 0.43 6.63 -51.93 -0.34 0.09 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.10 2.00 5.78 -51.93 -0.30 1.70 16 35 H 0.05 0.78 7.39 -51.93 -0.38 0.40 16 36 H 0.09 1.26 7.95 -51.93 -0.41 0.85 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.78 8.02 -51.92 -0.42 0.36 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -32.63 343.39 -8.82 -41.44 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.96 Total: -2.85 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -0.27 Total: 1.34 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.82 Total: -48.85 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.63 -8.82 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035238541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.984 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds