Wall clock time and date at job start Mon Mar 30 2020 05:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09001 * 109.50304 * 304.99611 * 3 2 1 5 5 C 1.53124 * 109.50530 * 65.07560 * 3 2 1 6 6 C 1.53119 * 109.15887 * 177.55633 * 5 3 2 7 7 C 1.53042 * 109.31209 * 302.40756 * 6 5 3 8 8 N 1.46846 * 109.52311 * 59.15730 * 7 6 5 9 9 C 1.46902 * 110.99680 * 174.16590 * 8 7 6 10 10 C 1.50702 * 109.46965 * 294.20542 * 9 8 7 11 11 O 1.21284 * 119.99862 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00195 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99550 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00206 * 180.02562 * 12 10 9 15 15 C 1.50697 * 109.47436 * 90.00233 * 14 12 10 16 16 H 1.07999 * 119.99744 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99901 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00275 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47325 * 59.99998 * 19 17 15 21 21 H 1.48507 * 109.46945 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47265 * 299.99903 * 19 17 15 23 23 C 1.46847 * 111.19465 * 298.25948 * 8 7 6 24 24 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 28 28 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 29 29 H 1.09003 * 109.52138 * 297.50126 * 5 3 2 30 30 H 1.08997 * 109.52165 * 57.68899 * 5 3 2 31 31 H 1.08998 * 109.50692 * 182.44538 * 6 5 3 32 32 H 1.09000 * 109.50624 * 62.36390 * 6 5 3 33 33 H 1.09008 * 109.45858 * 299.14014 * 7 6 5 34 34 H 1.09003 * 109.46217 * 179.17670 * 7 6 5 35 35 H 1.09000 * 109.47365 * 54.20918 * 9 8 7 36 36 H 1.08998 * 109.46999 * 174.21381 * 9 8 7 37 37 H 1.08997 * 109.47463 * 90.00274 * 13 12 10 38 38 H 1.09005 * 109.46632 * 210.00081 * 13 12 10 39 39 H 1.08999 * 109.47206 * 329.99781 * 13 12 10 40 40 H 1.09005 * 109.46679 * 210.00171 * 14 12 10 41 41 H 1.09004 * 109.47005 * 329.99729 * 14 12 10 42 42 H 0.96995 * 120.00461 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.46785 * 301.72191 * 23 8 7 44 44 H 1.09011 * 109.44841 * 181.75586 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9820 -0.8417 5 6 1.6370 2.1273 1.3089 6 6 2.2032 3.5498 1.3269 7 6 3.7239 3.4914 1.1647 8 7 4.0571 2.8287 -0.1027 9 6 5.5030 2.8775 -0.3579 10 6 5.9272 4.3075 -0.5725 11 8 5.1059 5.1984 -0.5177 12 7 7.2190 4.5966 -0.8254 13 6 8.2108 3.5203 -0.8921 14 6 7.6315 5.9868 -1.0334 15 6 8.0151 6.6002 0.2885 16 1 7.9570 6.0133 1.1932 17 6 8.4392 7.9110 0.3430 18 7 8.5094 8.6258 -0.7586 19 14 8.9140 8.6716 1.9817 20 1 10.0390 7.9055 2.5756 21 1 9.3322 10.0808 1.7707 22 1 7.7488 8.6329 2.9016 23 6 3.5654 1.4451 -0.1236 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 0.5500 2.1663 1.3799 30 1 2.0381 1.5654 2.1524 31 1 1.9565 4.0278 2.2749 32 1 1.7716 4.1237 0.5069 33 1 4.1561 2.9297 1.9929 34 1 4.1281 4.5037 1.1625 35 1 6.0372 2.4645 0.4978 36 1 5.7347 2.2924 -1.2479 37 1 8.2818 3.1546 -1.9164 38 1 9.1816 3.9007 -0.5741 39 1 7.9072 2.7051 -0.2354 40 1 8.4867 6.0148 -1.7088 41 1 6.8058 6.5494 -1.4692 42 1 8.8081 9.5479 -0.7204 43 1 3.9984 0.8930 0.7105 44 1 3.8546 0.9714 -1.0618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035238541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:57 Heat of formation + Delta-G solvation = -66.937052 kcal Electronic energy + Delta-G solvation = -21283.663207 eV Core-core repulsion = 18234.464102 eV Total energy + Delta-G solvation = -3049.199105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01276 -39.61404 -36.62664 -35.77991 -34.73185 -33.32309 -30.62952 -29.97490 -28.24432 -27.13935 -25.35673 -24.49599 -23.67949 -21.91927 -20.59678 -19.90772 -18.69607 -17.88000 -17.21623 -16.67271 -16.58969 -16.01442 -15.76454 -15.36351 -15.17413 -15.04081 -14.39701 -14.32317 -13.98646 -13.87164 -13.77446 -13.44196 -13.34802 -13.13314 -12.93431 -12.75357 -12.57269 -12.53853 -12.24627 -12.17525 -11.99631 -11.78969 -11.71708 -11.45830 -11.27337 -11.00651 -10.65247 -10.41392 -9.38257 -9.20453 -8.22805 -6.38313 1.35012 1.39566 1.46939 1.88354 2.25518 2.41000 3.02073 3.06204 3.74272 3.80962 3.92393 3.99075 4.17443 4.25505 4.33187 4.42190 4.46894 4.48707 4.52840 4.67373 4.71193 4.73678 4.78176 4.82916 4.95358 4.99958 5.01287 5.02995 5.10525 5.15899 5.22882 5.27279 5.28722 5.34691 5.53529 5.56315 5.60827 5.84960 6.02135 6.06404 6.23514 6.69935 6.83388 7.28299 7.55249 8.83962 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.004021 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.321410 B = 6960.961863 C = 7449.458971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.083 4.083 4 H 0.063 0.937 5 C -0.108 4.108 6 C -0.112 4.112 7 C 0.054 3.946 8 N -0.542 5.542 9 C 0.053 3.947 10 C 0.493 3.507 11 O -0.579 6.579 12 N -0.614 5.614 13 C 0.079 3.921 14 C 0.262 3.738 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.062 3.938 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.022 0.978 41 H -0.005 1.005 42 H 0.267 0.733 43 H 0.043 0.957 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 -20.931 3.108 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.102 4.102 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.150 4.150 7 C -0.074 4.074 8 N -0.267 5.267 9 C -0.077 4.077 10 C 0.281 3.719 11 O -0.459 6.459 12 N -0.347 5.347 13 C -0.063 4.063 14 C 0.140 3.860 15 C -0.582 4.582 16 H 0.070 0.930 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.065 4.065 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.484 -20.050 2.676 22.783 hybrid contribution 0.883 0.851 1.081 1.635 sum -9.601 -19.199 3.757 21.792 Atomic orbital electron populations 1.21801 0.95383 1.01963 1.01832 1.21473 0.96299 0.94521 1.02568 1.21201 0.93995 0.96951 0.98023 0.91878 1.21649 1.01044 0.94292 0.97552 1.21518 0.93714 0.98387 1.01370 1.22122 0.97494 0.98867 0.88939 1.61483 1.12310 1.17966 1.34895 1.21944 0.89573 0.92261 1.03960 1.21263 0.81779 0.92212 0.76613 1.90609 1.52444 1.50652 1.52158 1.48206 1.08026 1.08989 1.69486 1.21923 0.92302 0.89430 1.02664 1.18700 0.93570 0.78042 0.95686 1.21674 1.44555 0.97697 0.94264 0.92977 1.25881 0.95360 0.97336 1.00648 1.70045 1.47849 1.09680 1.29314 0.85467 0.78757 0.77623 0.78958 1.18355 1.20257 1.20358 1.22251 0.95755 0.86681 1.01780 0.92521 0.93169 0.91914 0.91362 0.91248 0.90563 0.91516 0.91182 0.93083 0.94902 0.92970 0.90462 0.85539 0.91017 0.91635 0.88999 0.95960 0.98710 0.92369 0.93866 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.24 16 2 C -0.11 -1.51 5.41 30.60 0.17 -1.35 16 3 C -0.08 -1.58 2.35 -10.74 -0.03 -1.60 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.11 -2.12 4.98 30.68 0.15 -1.97 16 6 C -0.11 -3.00 6.09 30.65 0.19 -2.81 16 7 C 0.05 1.72 5.11 86.33 0.44 2.16 16 8 N -0.54 -16.18 4.40 -900.90 -3.96 -20.14 16 9 C 0.05 1.57 4.00 85.56 0.34 1.91 16 10 C 0.49 21.26 7.35 87.66 0.64 21.90 16 11 O -0.58 -31.21 13.90 -3.04 -0.04 -31.25 16 12 N -0.61 -26.78 2.86 -851.12 -2.43 -29.21 16 13 C 0.08 2.36 10.24 127.77 1.31 3.67 16 14 C 0.26 14.55 5.16 85.63 0.44 14.99 16 15 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.39 5.46 84.66 0.46 0.85 16 18 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 19 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 C 0.06 1.30 4.74 86.32 0.41 1.71 16 24 H 0.06 0.72 6.63 -2.39 -0.02 0.70 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.31 6.70 -2.39 -0.02 1.30 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.05 2.19 5.78 -2.39 -0.01 2.18 16 35 H 0.08 1.95 7.39 -2.39 -0.02 1.93 16 36 H 0.13 2.91 7.95 -2.39 -0.02 2.89 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 39 H 0.09 2.06 6.44 -2.39 -0.02 2.04 16 40 H 0.02 1.25 8.07 -2.38 -0.02 1.24 16 41 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.09 1.56 8.02 -2.38 -0.02 1.54 16 Total: -1.00 -75.44 343.39 2.28 -73.16 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.94 Total: 10.51 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.47 Total: 6.40 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -6.11 Total: -106.45 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.04 Total: -31.25 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -75.44 2.28 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035238541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.226 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds