Wall clock time and date at job start Mon Mar 30 2020 05:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47270 * 2 1 4 4 C 1.53007 * 109.47222 * 119.99835 * 2 1 3 5 5 N 1.46496 * 109.47143 * 65.02314 * 4 2 1 6 6 C 1.46500 * 119.99670 * 266.18160 * 5 4 2 7 7 C 1.50705 * 109.46768 * 264.62046 * 6 5 4 8 8 H 1.08000 * 120.00005 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99577 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00584 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99649 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47089 * 89.99998 * 11 9 7 13 13 H 1.48498 * 109.47206 * 209.99719 * 11 9 7 14 14 H 1.48500 * 109.47184 * 330.00143 * 11 9 7 15 15 C 1.34774 * 120.00571 * 86.17501 * 5 4 2 16 16 O 1.21283 * 119.99777 * 4.06726 * 15 5 4 17 17 C 1.50701 * 120.00468 * 184.06810 * 15 5 4 18 18 C 1.53119 * 109.52575 * 146.61504 * 17 15 5 19 19 C 1.53030 * 109.27928 * 177.55858 * 18 17 15 20 20 N 1.46846 * 109.52342 * 300.82418 * 19 18 17 21 21 C 1.46843 * 111.20048 * 61.74396 * 20 19 18 22 22 C 1.53041 * 109.52133 * 298.25581 * 21 20 19 23 23 H 1.08994 * 109.47467 * 60.00293 * 1 2 3 24 24 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46987 * 300.00034 * 1 2 3 26 26 H 1.08999 * 109.47181 * 240.00085 * 2 1 3 27 27 H 1.08999 * 109.47154 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47044 * 299.99887 * 3 2 1 29 29 H 1.08999 * 109.46949 * 59.99943 * 3 2 1 30 30 H 1.08990 * 109.47016 * 305.01851 * 4 2 1 31 31 H 1.09001 * 109.46871 * 185.01574 * 4 2 1 32 32 H 1.09000 * 109.47403 * 24.62195 * 6 5 4 33 33 H 1.09002 * 109.47211 * 144.62189 * 6 5 4 34 34 H 0.96995 * 120.00327 * 180.02562 * 10 9 7 35 35 H 1.09005 * 109.57194 * 26.45696 * 17 15 5 36 36 H 1.09000 * 109.49734 * 57.61875 * 18 17 15 37 37 H 1.09001 * 109.50402 * 297.50389 * 18 17 15 38 38 H 1.09001 * 109.46318 * 180.80632 * 19 18 17 39 39 H 1.09003 * 109.46228 * 60.83662 * 19 18 17 40 40 H 1.00908 * 111.00039 * 185.84226 * 20 19 18 41 41 H 1.08997 * 109.46574 * 58.27138 * 21 20 19 42 42 H 1.09004 * 109.46656 * 178.24252 * 21 20 19 43 43 H 1.08995 * 109.50294 * 299.24011 * 22 21 20 44 44 H 1.09001 * 109.50366 * 179.11748 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6529 -2.1329 1.1904 6 6 0.4152 -2.5805 1.8339 7 6 0.7267 -3.1037 3.2125 8 1 1.7446 -3.1025 3.5733 9 6 -0.2880 -3.5839 4.0130 10 7 -1.5275 -3.5858 3.5735 11 14 0.0979 -4.2317 5.7221 12 1 0.0106 -3.1210 6.7039 13 1 -0.8800 -5.2894 6.0830 14 1 1.4698 -4.7997 5.7380 15 6 2.4353 -3.0199 0.5442 16 8 3.4956 -2.6642 0.0751 17 6 1.9926 -4.4536 0.4045 18 6 2.4920 -5.0158 -0.9293 19 6 2.0920 -6.4889 -1.0383 20 7 2.6767 -7.2402 0.0798 21 6 2.1751 -6.7491 1.3695 22 6 2.5776 -5.2837 1.5504 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6051 -0.2619 2.1369 31 1 3.1263 -0.6441 1.2953 32 1 -0.2777 -1.7426 1.9112 33 1 -0.0380 -3.3730 1.2383 34 1 -2.2414 -3.9233 4.1368 35 1 0.9042 -4.5045 0.4366 36 1 3.5775 -4.9289 -0.9771 37 1 2.0451 -4.4556 -1.7506 38 1 2.4586 -6.8960 -1.9806 39 1 1.0058 -6.5737 -1.0042 40 1 2.5068 -8.2297 -0.0213 41 1 1.0886 -6.8327 1.3923 42 1 2.6020 -7.3452 2.1761 43 1 3.6644 -5.2012 1.5416 44 1 2.1917 -4.9150 2.5008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:50 Heat of formation + Delta-G solvation = -60.731824 kcal Electronic energy + Delta-G solvation = -22257.612531 eV Core-core repulsion = 19208.682506 eV Total energy + Delta-G solvation = -3048.930026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64858 -37.54660 -35.91482 -34.03850 -32.29519 -31.67042 -30.38310 -27.63732 -26.78493 -26.00499 -23.70968 -22.85607 -22.43746 -20.24924 -19.31895 -18.06979 -16.63543 -16.39772 -16.04015 -15.48575 -14.55556 -14.46841 -14.30241 -14.16292 -13.56156 -13.41626 -12.97221 -12.83981 -12.48096 -12.34099 -12.09123 -11.97715 -11.80427 -11.52579 -11.37103 -11.13134 -10.95070 -10.87749 -10.79475 -10.61460 -10.54031 -10.27793 -10.10367 -9.93618 -9.89832 -9.65381 -8.82458 -8.52344 -8.21083 -7.63876 -6.20056 -4.26135 3.20150 3.28029 3.30740 3.49532 3.99267 4.31859 4.48399 5.12361 5.15368 5.22654 5.31051 5.35731 5.41365 5.49366 5.59437 5.71486 5.80381 5.89333 5.96818 5.99049 6.03978 6.12026 6.13983 6.17203 6.20123 6.30056 6.36908 6.41940 6.45812 6.53581 6.63595 6.74475 6.78631 6.84867 6.92719 7.21694 7.30779 7.58837 7.60530 7.76487 8.06530 8.39645 8.79824 9.11473 9.40759 10.86222 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.010896 B = 0.009786 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.162156 B = 2860.608150 C = 4799.274271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.236 3.764 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.523 3.477 16 O -0.576 6.576 17 C -0.099 4.099 18 C -0.100 4.100 19 C 0.061 3.939 20 N -0.692 5.692 21 C 0.061 3.939 22 C -0.106 4.106 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.336 0.664 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -0.613 -6.354 6.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.324 5.324 6 C 0.116 3.884 7 C -0.571 4.571 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.718 3.282 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.312 3.688 16 O -0.457 6.457 17 C -0.120 4.120 18 C -0.139 4.139 19 C -0.068 4.068 20 N -0.323 5.323 21 C -0.068 4.068 22 C -0.144 4.144 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.153 0.847 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.715 -0.076 -6.496 7.484 hybrid contribution -1.037 -0.712 1.098 1.670 sum 2.679 -0.788 -5.398 6.077 Atomic orbital electron populations 1.21872 0.95066 1.02453 1.00801 1.21487 0.96260 0.95810 0.99473 1.21748 1.00797 0.95996 1.01350 1.21332 0.99955 0.81691 0.96955 1.48225 1.25096 1.06768 1.52299 1.19509 0.80600 0.96016 0.92256 1.21492 0.94245 1.41735 0.99635 0.92021 1.24909 0.94851 0.95586 0.98307 1.69913 0.99525 1.46195 1.37226 0.86603 0.78402 0.78792 0.84391 1.20567 1.21104 1.19597 1.20435 0.83584 0.87533 0.77254 1.90564 1.23554 1.80591 1.50985 1.21237 1.02216 0.92141 0.96450 1.21457 1.02610 0.93853 0.95952 1.21892 0.96484 0.94678 0.93794 1.60331 1.62510 1.07042 1.02374 1.21909 0.97573 0.96600 0.90673 1.21589 1.00710 0.92782 0.99365 0.93713 0.91855 0.92725 0.91440 0.92845 0.93043 0.92735 0.90651 0.91335 0.94175 0.94690 0.92584 0.88917 0.90367 0.92157 0.91162 0.95308 0.84749 0.94717 0.91021 0.91868 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.29 37.15 0.31 -1.98 16 2 C -0.11 -1.79 3.10 -90.62 -0.28 -2.07 16 3 C -0.14 -1.87 9.19 37.16 0.34 -1.53 16 4 C 0.12 2.33 4.83 -4.04 -0.02 2.31 16 5 N -0.59 -12.44 2.23 -175.06 -0.39 -12.83 16 6 C 0.24 5.42 3.88 -5.19 -0.02 5.40 16 7 C -0.53 -13.30 7.56 -34.44 -0.26 -13.56 16 8 H 0.06 1.59 7.46 -52.49 -0.39 1.20 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -23.79 13.29 55.43 0.74 -23.05 16 11 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 15 C 0.52 11.13 6.63 -10.99 -0.07 11.05 16 16 O -0.58 -13.34 15.81 5.55 0.09 -13.25 16 17 C -0.10 -1.89 2.04 -91.65 -0.19 -2.08 16 18 C -0.10 -1.68 5.06 -26.65 -0.13 -1.81 16 19 C 0.06 0.86 6.55 -3.84 -0.03 0.84 16 20 N -0.69 -9.90 6.84 -113.82 -0.78 -10.68 16 21 C 0.06 0.98 6.55 -3.83 -0.03 0.96 16 22 C -0.11 -2.00 5.36 -26.65 -0.14 -2.14 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.12 6.28 -51.93 -0.33 0.79 16 25 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 31 H 0.07 1.32 7.49 -51.93 -0.39 0.93 16 32 H 0.04 0.96 6.66 -51.93 -0.35 0.62 16 33 H 0.04 0.84 5.91 -51.93 -0.31 0.54 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.09 1.86 5.85 -51.93 -0.30 1.55 16 36 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.34 3.93 8.90 -39.29 -0.35 3.58 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.10 2.08 5.81 -51.93 -0.30 1.78 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -27.60 339.72 -8.61 -36.20 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.74 Total: 6.47 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.62 Total: -3.02 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.43 Total: -46.57 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.60 -8.61 -36.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds