Wall clock time and date at job start Mon Mar 30 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47343 * 119.99816 * 2 1 3 5 5 N 1.46493 * 109.47555 * 175.00049 * 4 2 1 6 6 C 1.46502 * 120.00341 * 89.99629 * 5 4 2 7 7 C 1.50706 * 109.46622 * 90.00315 * 6 5 4 8 8 H 1.08005 * 120.00138 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99722 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46845 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47399 * 119.99815 * 11 9 7 14 14 H 1.48498 * 109.47295 * 240.00422 * 11 9 7 15 15 C 1.34776 * 120.00157 * 270.00453 * 5 4 2 16 16 O 1.21285 * 120.00530 * 179.97438 * 15 5 4 17 17 C 1.50709 * 119.99688 * 359.97438 * 15 5 4 18 18 H 1.08995 * 109.46451 * 40.02136 * 17 15 5 19 19 C 1.53036 * 109.45921 * 280.05116 * 17 15 5 20 20 C 1.53118 * 109.27711 * 180.80524 * 19 17 15 21 21 C 1.53125 * 109.16126 * 57.65823 * 20 19 17 22 22 C 1.53040 * 109.27437 * 302.34722 * 21 20 19 23 23 N 1.46846 * 109.52564 * 59.17990 * 22 21 20 24 24 H 1.09005 * 109.47016 * 300.00391 * 1 2 3 25 25 H 1.08995 * 109.47127 * 59.99868 * 1 2 3 26 26 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47373 * 239.99987 * 2 1 3 28 28 H 1.09005 * 109.47069 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47196 * 300.00090 * 3 2 1 30 30 H 1.09003 * 109.46976 * 59.99744 * 3 2 1 31 31 H 1.09003 * 109.46718 * 54.99811 * 4 2 1 32 32 H 1.08998 * 109.47090 * 295.00380 * 4 2 1 33 33 H 1.08996 * 109.47065 * 330.00997 * 6 5 4 34 34 H 1.08994 * 109.47523 * 210.00473 * 6 5 4 35 35 H 0.97000 * 119.99651 * 0.02562 * 10 9 7 36 36 H 1.08998 * 109.50556 * 300.74875 * 19 17 15 37 37 H 1.09003 * 109.50573 * 60.86845 * 19 17 15 38 38 H 1.09005 * 109.52439 * 297.75414 * 20 19 17 39 39 H 1.08995 * 109.57656 * 177.59062 * 20 19 17 40 40 H 1.08994 * 109.50070 * 182.40691 * 21 20 19 41 41 H 1.08999 * 109.53665 * 62.30604 * 21 20 19 42 42 H 1.09008 * 109.46222 * 299.16107 * 22 21 20 43 43 H 1.09001 * 109.45926 * 179.19906 * 22 21 20 44 44 H 1.00894 * 110.99883 * 62.35415 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.3344 0.2341 1.7612 7 6 4.6221 -0.0767 3.2076 8 1 4.2237 -0.9745 3.6566 9 6 5.3939 0.7852 3.9574 10 7 5.8787 1.8787 3.4108 11 14 5.7501 0.4004 5.7504 12 1 5.0940 -0.8790 6.1218 13 1 7.2168 0.2799 5.9490 14 1 5.2230 1.4941 6.6055 15 6 4.0758 -1.8986 0.6116 16 8 5.2845 -1.9855 0.5626 17 6 3.2175 -2.9897 0.0250 18 1 2.3627 -2.5451 -0.4846 19 6 2.7224 -3.9069 1.1455 20 6 1.8676 -5.0252 0.5429 21 6 2.6989 -5.7927 -0.4889 22 6 3.1948 -4.8208 -1.5621 23 7 4.0077 -3.7707 -0.9353 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.8091 1.1866 1.6919 34 1 5.2722 0.2953 1.2092 35 1 5.6928 2.0791 2.4801 36 1 3.5767 -4.3413 1.6645 37 1 2.1229 -3.3301 1.8498 38 1 0.9925 -4.5934 0.0571 39 1 1.5476 -5.7058 1.3318 40 1 2.0827 -6.5631 -0.9524 41 1 3.5529 -6.2574 0.0038 42 1 2.3401 -4.3673 -2.0643 43 1 3.7989 -5.3616 -2.2905 44 1 4.8273 -4.1619 -0.4957 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:38 Heat of formation + Delta-G solvation = -59.059387 kcal Electronic energy + Delta-G solvation = -22184.895738 eV Core-core repulsion = 19136.038235 eV Total energy + Delta-G solvation = -3048.857503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.97374 -37.80040 -36.33261 -33.75820 -32.48178 -31.73042 -31.06337 -27.51663 -26.79823 -25.57862 -24.14186 -23.23601 -22.30013 -20.59965 -20.07535 -18.70370 -16.93660 -16.56257 -16.02805 -15.13762 -14.77630 -14.60724 -14.46279 -14.16245 -13.75862 -13.64025 -13.52775 -12.92017 -12.68459 -12.49503 -12.21163 -12.10908 -11.93363 -11.76220 -11.52520 -11.41227 -11.24576 -10.96306 -10.88706 -10.78868 -10.74078 -10.57972 -10.43195 -10.31286 -10.13049 -9.08227 -8.91300 -8.34591 -8.21826 -7.55724 -6.35503 -4.06999 3.36674 3.43778 3.48844 3.60771 3.75128 4.44664 4.54668 4.69289 4.75223 4.88102 5.02106 5.06199 5.12788 5.16610 5.28927 5.33181 5.39488 5.42053 5.58352 5.65672 5.71134 5.78476 5.80628 5.85902 5.90715 5.92303 6.01242 6.05696 6.10641 6.13308 6.22037 6.27006 6.50683 6.60626 6.85886 7.05075 7.19869 7.46072 7.49804 8.08636 8.35214 8.47502 8.81402 9.07917 9.62426 11.01724 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.006522 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.941574 B = 4292.408492 C = 5177.276470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.148 4.148 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.233 3.767 7 C -0.604 4.604 8 H 0.050 0.950 9 C 0.019 3.981 10 N -0.911 5.911 11 Si 1.075 2.925 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.287 1.287 15 C 0.514 3.486 16 O -0.534 6.534 17 C 0.072 3.928 18 H 0.096 0.904 19 C -0.150 4.150 20 C -0.116 4.116 21 C -0.160 4.160 22 C 0.059 3.941 23 N -0.668 5.668 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 -10.494 -7.848 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.205 4.205 4 C -0.012 4.012 5 N -0.320 5.320 6 C 0.113 3.887 7 C -0.643 4.643 8 H 0.069 0.931 9 C -0.185 4.185 10 N -0.548 5.548 11 Si 0.904 3.096 12 H -0.217 1.217 13 H -0.213 1.213 14 H -0.213 1.213 15 C 0.300 3.700 16 O -0.411 6.411 17 C -0.042 4.042 18 H 0.114 0.886 19 C -0.189 4.189 20 C -0.153 4.153 21 C -0.200 4.200 22 C -0.071 4.071 23 N -0.299 5.299 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.374 -9.497 -7.035 16.403 hybrid contribution -1.010 -1.221 -0.529 1.671 sum -12.385 -10.718 -7.563 18.041 Atomic orbital electron populations 1.21777 0.95097 1.01363 1.01842 1.21608 0.95345 0.97608 0.98926 1.21916 1.02407 0.95146 1.01022 1.21641 0.81383 1.00247 0.97965 1.47938 1.05897 1.21714 1.56452 1.19441 0.90257 0.84913 0.94053 1.22314 1.35974 1.10177 0.95816 0.93148 1.25765 0.93358 0.93433 1.05939 1.70739 1.43527 1.25098 1.15394 0.83456 0.76591 0.75164 0.74389 1.21700 1.21259 1.21331 1.20128 0.88490 0.82818 0.78570 1.90649 1.14601 1.77869 1.57965 1.21562 0.96253 0.93759 0.92640 0.88574 1.22225 1.00828 0.97488 0.98379 1.21546 0.98108 0.97249 0.98432 1.22302 1.00442 0.99010 0.98204 1.22038 0.97629 0.91441 0.95967 1.60384 1.08790 1.25970 1.34772 0.92471 0.92747 0.92943 0.91432 0.91571 0.93460 0.92570 0.91374 0.90037 0.95231 0.95132 0.92174 0.91238 0.90534 0.91794 0.91768 0.91552 0.91894 0.91080 0.90565 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.12 -1.61 2.94 -90.62 -0.27 -1.88 16 3 C -0.15 -2.27 8.18 37.16 0.30 -1.97 16 4 C 0.11 1.83 4.49 -4.05 -0.02 1.81 16 5 N -0.59 -12.45 2.28 -175.06 -0.40 -12.85 16 6 C 0.23 6.03 3.54 -5.19 -0.02 6.01 16 7 C -0.60 -17.30 9.39 -34.44 -0.32 -17.63 16 8 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 10 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 11 Si 1.08 25.93 29.90 -169.99 -5.08 20.85 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.51 10.92 6.92 -10.98 -0.08 10.84 16 16 O -0.53 -13.78 15.77 5.55 0.09 -13.70 16 17 C 0.07 1.12 1.98 -68.87 -0.14 0.98 16 18 H 0.10 1.38 6.19 -51.93 -0.32 1.06 16 19 C -0.15 -2.06 5.08 -26.65 -0.14 -2.20 16 20 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 21 C -0.16 -1.57 6.08 -26.65 -0.16 -1.74 16 22 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 23 N -0.67 -10.01 6.28 -107.98 -0.68 -10.68 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.97 7.27 -51.93 -0.38 0.59 16 28 H 0.07 1.21 5.89 -51.93 -0.31 0.90 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.96 4.75 -51.93 -0.25 0.71 16 32 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.03 0.76 5.84 -51.93 -0.30 0.45 16 34 H 0.03 0.90 7.29 -51.93 -0.38 0.52 16 35 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.06 6.32 -51.93 -0.33 0.73 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.35 5.63 8.31 -39.29 -0.33 5.30 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -32.91 337.70 -8.58 -41.49 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.58 Total: 4.21 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.77 Total: -7.26 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.32 Total: -50.68 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.91 -8.58 -41.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.568 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds