Wall clock time and date at job start Mon Mar 30 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53002 * 109.46838 * 120.00455 * 2 1 3 5 5 N 1.46492 * 109.47540 * 64.99755 * 4 2 1 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 2 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47166 * 60.00152 * 11 9 7 13 13 H 1.48506 * 109.47069 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47159 * 299.99829 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 2 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 H 1.09000 * 109.46037 * 319.70686 * 17 15 5 19 19 C 1.53035 * 109.46083 * 79.67243 * 17 15 5 20 20 C 1.53118 * 109.27446 * 179.19870 * 19 17 15 21 21 C 1.53121 * 109.16313 * 302.34214 * 20 19 17 22 22 C 1.53035 * 109.27550 * 57.65681 * 21 20 19 23 23 N 1.46842 * 109.46289 * 199.72748 * 17 15 5 24 24 H 1.09000 * 109.47179 * 59.99786 * 1 2 3 25 25 H 1.08997 * 109.47700 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47001 * 299.99803 * 1 2 3 27 27 H 1.08997 * 109.46603 * 239.99939 * 2 1 3 28 28 H 1.09003 * 109.47275 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47126 * 300.00246 * 3 2 1 30 30 H 1.09002 * 109.46880 * 60.00123 * 3 2 1 31 31 H 1.08999 * 109.47326 * 304.98937 * 4 2 1 32 32 H 1.09006 * 109.46825 * 184.99779 * 4 2 1 33 33 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 34 34 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 35 35 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.50195 * 299.13697 * 19 17 15 37 37 H 1.08997 * 109.50518 * 59.25844 * 19 17 15 38 38 H 1.09008 * 109.51775 * 182.44037 * 20 19 17 39 39 H 1.09001 * 109.57920 * 62.28494 * 20 19 17 40 40 H 1.08995 * 109.50257 * 297.71903 * 21 20 19 41 41 H 1.08994 * 109.53552 * 177.61407 * 21 20 19 42 42 H 1.08997 * 109.46629 * 180.80162 * 22 21 20 43 43 H 1.09005 * 109.46367 * 60.83370 * 22 21 20 44 44 H 1.00906 * 111.00108 * 302.33736 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3744 -2.5659 1.7613 7 6 0.5715 -2.9409 3.2076 8 1 1.5507 -2.8639 3.6568 9 6 -0.4983 -3.3812 3.9575 10 7 -1.6907 -3.4744 3.4106 11 14 -0.2541 -3.8453 5.7504 12 1 0.2506 -2.6682 6.5021 13 1 -1.5495 -4.2843 6.3289 14 1 0.7305 -4.9528 5.8454 15 6 2.4713 -3.0331 0.6116 16 8 2.1527 -4.2025 0.5674 17 6 3.7857 -2.5876 0.0240 18 1 3.6497 -1.6361 -0.4902 19 6 4.8141 -2.4189 1.1446 20 6 6.1530 -1.9857 0.5410 21 6 6.6026 -3.0291 -0.4855 22 6 5.5223 -3.1801 -1.5589 23 7 4.2616 -3.5963 -0.9312 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2618 2.1370 32 1 3.1263 -0.6445 1.2951 33 1 -0.3485 -1.7532 1.6919 34 1 0.0041 -3.4297 1.2093 35 1 -2.4435 -3.7839 3.9384 36 1 4.4678 -1.6589 1.8450 37 1 4.9406 -3.3666 1.6681 38 1 6.9000 -1.9064 1.3309 39 1 6.0370 -1.0190 0.0509 40 1 6.7572 -3.9863 0.0124 41 1 7.5342 -2.7058 -0.9498 42 1 5.8330 -3.9327 -2.2836 43 1 5.3779 -2.2259 -2.0657 44 1 4.3588 -4.4972 -0.4873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:41 Heat of formation + Delta-G solvation = -55.503894 kcal Electronic energy + Delta-G solvation = -22142.297732 eV Core-core repulsion = 19093.594406 eV Total energy + Delta-G solvation = -3048.703326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89252 -37.71688 -36.23911 -33.51693 -32.34572 -31.68152 -31.04636 -27.73828 -26.79961 -25.54291 -24.30344 -23.19870 -22.13513 -20.52385 -19.99596 -18.49869 -16.53601 -16.42943 -16.02186 -15.00372 -14.80629 -14.51220 -14.48484 -14.25580 -13.95135 -13.55268 -13.42592 -12.79559 -12.66646 -12.26014 -12.13711 -12.02237 -11.92902 -11.63390 -11.41659 -11.26297 -11.21330 -10.94563 -10.88996 -10.87627 -10.72540 -10.51309 -10.34781 -10.23029 -10.08275 -9.55941 -8.81812 -8.38889 -8.15816 -7.56028 -6.00780 -4.05072 3.32629 3.37362 3.39075 3.46958 3.84803 4.45120 4.52627 4.73356 4.80941 4.92590 5.09631 5.12143 5.20009 5.23945 5.33166 5.35179 5.39996 5.47607 5.63269 5.72388 5.75512 5.85376 5.87484 5.91416 5.95545 5.97026 6.06829 6.13553 6.19285 6.21004 6.27931 6.35649 6.60524 6.73947 7.01181 7.22445 7.49806 7.53806 7.62655 7.96214 8.28776 8.50335 8.94446 9.17744 9.59628 11.07007 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.006491 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.956593 B = 4312.557974 C = 5198.217907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.111 3.889 5 N -0.593 5.593 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.514 3.486 16 O -0.534 6.534 17 C 0.070 3.930 18 H 0.096 0.904 19 C -0.150 4.150 20 C -0.116 4.116 21 C -0.160 4.160 22 C 0.059 3.941 23 N -0.668 5.668 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.465 8.354 -7.744 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.201 4.201 4 C -0.013 4.013 5 N -0.324 5.324 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.299 3.701 16 O -0.411 6.411 17 C -0.043 4.043 18 H 0.114 0.886 19 C -0.189 4.189 20 C -0.153 4.153 21 C -0.200 4.200 22 C -0.071 4.071 23 N -0.299 5.299 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.654 7.885 -8.236 17.033 hybrid contribution 0.720 -0.285 1.864 2.019 sum 13.375 7.600 -6.371 16.651 Atomic orbital electron populations 1.21920 0.94581 1.03123 1.00894 1.21603 0.97186 0.95727 0.98944 1.21781 1.00429 0.96106 1.01774 1.21640 0.99145 0.82571 0.97961 1.48141 1.21722 1.06162 1.56410 1.19382 0.78718 0.96372 0.93106 1.21412 0.94940 1.44422 0.95619 0.92696 1.24912 0.95087 0.95488 0.98551 1.69922 0.99787 1.47033 1.36619 0.86604 0.77342 0.78908 0.84812 1.20323 1.21188 1.20287 1.20102 0.85102 0.86218 0.78673 1.90650 1.74927 1.17503 1.57991 1.21580 0.93239 0.96857 0.92650 0.88587 1.22230 0.95252 1.03017 0.98434 1.21546 0.96686 0.98695 0.98420 1.22300 0.99680 0.99725 0.98253 1.22034 0.87588 1.01508 0.95945 1.60386 1.29105 1.05503 1.34889 0.93649 0.91211 0.92570 0.91480 0.93035 0.92831 0.92511 0.90020 0.91534 0.94167 0.94108 0.92726 0.90493 0.91273 0.91855 0.91796 0.91934 0.91619 0.90627 0.91093 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.18 37.16 0.30 -2.00 16 2 C -0.11 -1.61 2.94 -90.62 -0.27 -1.88 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.11 1.81 4.49 -4.05 -0.02 1.79 16 5 N -0.59 -12.45 2.28 -175.06 -0.40 -12.85 16 6 C 0.24 6.32 4.23 -5.19 -0.02 6.29 16 7 C -0.52 -14.87 9.39 -34.44 -0.32 -15.20 16 8 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 11 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.51 10.83 6.93 -10.98 -0.08 10.76 16 16 O -0.53 -13.71 15.77 5.56 0.09 -13.63 16 17 C 0.07 1.10 1.98 -68.88 -0.14 0.96 16 18 H 0.10 1.38 6.20 -51.93 -0.32 1.05 16 19 C -0.15 -2.05 5.08 -26.65 -0.14 -2.18 16 20 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 21 C -0.16 -1.58 6.08 -26.65 -0.16 -1.74 16 22 C 0.06 0.65 6.55 -3.83 -0.03 0.63 16 23 N -0.67 -10.00 6.28 -107.99 -0.68 -10.68 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.30 5.89 -51.93 -0.31 0.99 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.97 7.26 -51.93 -0.38 0.59 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 32 H 0.07 0.93 4.73 -51.93 -0.25 0.68 16 33 H 0.04 1.04 5.98 -51.93 -0.31 0.73 16 34 H 0.04 1.22 7.43 -51.93 -0.39 0.83 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.08 1.05 6.28 -51.93 -0.33 0.73 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.35 5.62 8.31 -39.29 -0.33 5.29 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -31.97 338.97 -8.58 -40.55 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.64 Total: 3.95 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.78 Total: -3.50 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.34 Total: -49.44 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.97 -8.58 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.952 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds