Wall clock time and date at job start Mon Mar 30 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47225 * 2 1 4 4 C 1.53004 * 109.47342 * 119.99919 * 2 1 3 5 5 N 1.46501 * 109.46832 * 65.50089 * 4 2 1 6 6 C 1.46503 * 119.99802 * 264.42790 * 5 4 2 7 7 C 1.50700 * 109.46954 * 269.99660 * 6 5 4 8 8 H 1.08004 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00133 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00214 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47049 * 60.00345 * 11 9 7 13 13 H 1.48502 * 109.47215 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47117 * 300.00419 * 11 9 7 15 15 C 1.34776 * 120.00361 * 84.42594 * 5 4 2 16 16 O 1.21287 * 119.99549 * 4.84030 * 15 5 4 17 17 C 1.50691 * 120.00494 * 184.83823 * 15 5 4 18 18 C 1.53002 * 109.47089 * 78.38451 * 17 15 5 19 19 N 1.46903 * 109.47007 * 318.38706 * 17 15 5 20 20 C 1.53001 * 109.47637 * 198.38948 * 17 15 5 21 21 C 1.52994 * 117.52128 * 111.28137 * 20 17 15 22 22 C 1.52996 * 117.50217 * 179.91706 * 20 17 15 23 23 H 1.08998 * 109.47259 * 60.00234 * 1 2 3 24 24 H 1.09003 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47342 * 299.99479 * 1 2 3 26 26 H 1.09004 * 109.47189 * 240.00014 * 2 1 3 27 27 H 1.09005 * 109.47533 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47262 * 300.00082 * 3 2 1 29 29 H 1.09004 * 109.47026 * 59.99914 * 3 2 1 30 30 H 1.09004 * 109.46953 * 305.50451 * 4 2 1 31 31 H 1.08997 * 109.47604 * 185.49914 * 4 2 1 32 32 H 1.08996 * 109.47310 * 30.00042 * 6 5 4 33 33 H 1.09004 * 109.46942 * 150.00263 * 6 5 4 34 34 H 0.97002 * 120.00415 * 179.97438 * 10 9 7 35 35 H 1.09006 * 109.46934 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.47307 * 300.00305 * 18 17 15 37 37 H 1.09001 * 109.47072 * 60.00243 * 18 17 15 38 38 H 1.00903 * 110.99628 * 174.59014 * 19 17 15 39 39 H 1.00895 * 111.00209 * 298.54327 * 19 17 15 40 40 H 1.09004 * 115.54280 * 325.58234 * 20 17 15 41 41 H 1.09006 * 117.49843 * 214.97374 * 21 20 17 42 42 H 1.08997 * 117.49980 * 359.97438 * 21 20 17 43 43 H 1.09000 * 117.50148 * 359.96855 * 22 20 17 44 44 H 1.09000 * 117.50329 * 144.97477 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6628 -2.1354 1.1849 6 6 0.4456 -2.6000 1.8548 7 6 0.7754 -3.0125 3.2663 8 1 1.7901 -2.9358 3.6282 9 6 -0.2184 -3.4868 4.0959 10 7 -1.4541 -3.5798 3.6555 11 14 0.1902 -3.9974 5.8457 12 1 0.7486 -2.8355 6.5828 13 1 -1.0435 -4.4685 6.5248 14 1 1.1905 -5.0947 5.8204 15 6 2.4354 -3.0089 0.5093 16 8 3.4873 -2.6428 0.0292 17 6 1.9925 -4.4405 0.3504 18 6 0.9355 -4.5279 -0.7525 19 7 1.4204 -4.9194 1.6159 20 6 3.1953 -5.3079 -0.0261 21 6 3.6939 -6.3143 1.0127 22 6 2.9507 -6.8041 -0.2318 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.5984 -0.2674 2.1365 31 1 3.1255 -0.6368 1.2999 32 1 -0.2887 -1.7948 1.8738 33 1 0.0358 -3.4528 1.3135 34 1 -2.1532 -3.9138 4.2390 35 1 0.6154 -5.5635 -0.8677 36 1 0.0785 -3.9100 -0.4842 37 1 1.3599 -4.1725 -1.6915 38 1 1.0360 -5.8464 1.5110 39 1 2.1064 -4.8939 2.3553 40 1 3.9408 -4.8279 -0.6602 41 1 4.7675 -6.4966 1.0621 42 1 3.1653 -6.3584 1.9649 43 1 1.9329 -7.1707 -0.0983 44 1 3.5350 -7.3085 -1.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037822663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:58 Heat of formation + Delta-G solvation = -20.526891 kcal Electronic energy + Delta-G solvation = -22630.825371 eV Core-core repulsion = 19583.638762 eV Total energy + Delta-G solvation = -3047.186609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39731 -38.92572 -37.37725 -35.75065 -34.18410 -33.58957 -30.09555 -29.12710 -27.96176 -27.25445 -25.44615 -24.39178 -23.17694 -21.95855 -20.79611 -19.20702 -18.30591 -17.71971 -17.51200 -16.58713 -16.29739 -16.07919 -15.86436 -15.57671 -15.07871 -14.70586 -14.13007 -14.11029 -13.72126 -13.63716 -13.34534 -13.07891 -13.01140 -12.83684 -12.75897 -12.58295 -12.54355 -12.36487 -12.24566 -12.03263 -11.97505 -11.71604 -11.53045 -11.35674 -11.28555 -11.03567 -10.48201 -10.26569 -9.22141 -8.90828 -7.89205 -5.90296 1.47856 1.51277 1.55366 1.84503 2.44503 2.60967 2.92196 3.41875 3.65521 3.73776 3.89501 3.98358 4.01065 4.07233 4.18632 4.22242 4.49468 4.52692 4.65171 4.69777 4.72929 4.82440 4.87135 4.90871 4.93633 5.00597 5.03040 5.08583 5.19734 5.21583 5.22478 5.25303 5.31685 5.45118 5.50126 5.70507 6.01816 6.13695 6.41347 6.48315 6.76611 6.84367 7.14102 7.50230 7.71324 9.17766 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.011498 B = 0.010188 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.634574 B = 2747.662224 C = 4426.360601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C -0.135 4.135 4 C 0.118 3.882 5 N -0.582 5.582 6 C 0.257 3.743 7 C -0.480 4.480 8 H 0.035 0.965 9 C 0.032 3.968 10 N -0.920 5.920 11 Si 0.933 3.067 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.274 1.274 15 C 0.519 3.481 16 O -0.605 6.605 17 C 0.139 3.861 18 C -0.125 4.125 19 N -0.792 5.792 20 C -0.184 4.184 21 C -0.188 4.188 22 C -0.150 4.150 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.055 0.945 32 H -0.001 1.001 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.337 0.663 39 H 0.341 0.659 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -1.204 -7.614 8.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.193 4.193 4 C -0.005 4.005 5 N -0.310 5.310 6 C 0.137 3.863 7 C -0.519 4.519 8 H 0.053 0.947 9 C -0.166 4.166 10 N -0.562 5.562 11 Si 0.762 3.238 12 H -0.214 1.214 13 H -0.220 1.220 14 H -0.200 1.200 15 C 0.308 3.692 16 O -0.488 6.488 17 C 0.042 3.958 18 C -0.183 4.183 19 N -0.326 5.326 20 C -0.205 4.205 21 C -0.225 4.225 22 C -0.187 4.187 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.017 0.983 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.064 -0.429 -7.817 8.821 hybrid contribution 0.897 -0.912 1.292 1.818 sum 4.961 -1.341 -6.525 8.306 Atomic orbital electron populations 1.21788 0.94598 1.01304 1.01759 1.21386 0.96495 0.97133 0.97144 1.21707 1.00813 0.94054 1.02701 1.21468 0.99148 0.81654 0.98271 1.48229 1.26232 1.07197 1.49341 1.19511 0.80100 0.94796 0.91856 1.21218 0.93191 1.40278 0.97248 0.94703 1.25165 0.94916 0.96600 0.99968 1.69987 1.00838 1.48598 1.36738 0.86030 0.76913 0.78301 0.82558 1.21362 1.21969 1.19955 1.20746 0.82750 0.88502 0.77244 1.90538 1.25024 1.80651 1.52624 1.20252 0.92930 0.89934 0.92658 1.21720 0.97062 1.03597 0.95914 1.59510 1.39060 1.30664 1.03322 1.22902 1.00706 0.92129 1.04735 1.23117 1.01078 1.03777 0.94576 1.23006 1.02082 0.94193 0.99444 0.91450 0.94099 0.92927 0.93021 0.92793 0.91111 0.91944 0.91116 0.92691 0.98329 0.90765 0.93522 0.89769 0.92552 0.92180 0.84746 0.84236 0.88807 0.88401 0.88864 0.87730 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.35 71.98 0.60 -3.73 16 2 C -0.10 -3.30 3.08 -10.80 -0.03 -3.33 16 3 C -0.13 -3.44 9.19 71.98 0.66 -2.78 16 4 C 0.12 4.54 4.82 86.38 0.42 4.95 16 5 N -0.58 -24.50 2.20 -826.14 -1.82 -26.32 16 6 C 0.26 11.91 3.72 85.63 0.32 12.23 16 7 C -0.48 -23.96 6.79 25.60 0.17 -23.79 16 8 H 0.03 1.81 7.81 -2.91 -0.02 1.79 16 9 C 0.03 1.62 5.46 84.65 0.46 2.08 16 10 N -0.92 -49.67 13.29 21.44 0.28 -49.39 16 11 Si 0.93 41.78 29.54 68.60 2.03 43.80 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.52 21.65 6.58 87.65 0.58 22.23 16 16 O -0.61 -27.76 15.34 -3.05 -0.05 -27.81 16 17 C 0.14 4.80 0.64 2.78 0.00 4.80 16 18 C -0.13 -3.88 8.32 71.98 0.60 -3.28 16 19 N -0.79 -28.55 3.78 -154.52 -0.58 -29.13 16 20 C -0.18 -5.65 4.91 -10.80 -0.05 -5.70 16 21 C -0.19 -5.04 9.62 30.59 0.29 -4.75 16 22 C -0.15 -3.48 9.43 30.59 0.29 -3.19 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.04 1.47 6.32 -2.39 -0.02 1.45 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 2.75 8.03 -2.39 -0.02 2.74 16 31 H 0.05 2.19 7.53 -2.39 -0.02 2.17 16 32 H 0.00 -0.06 6.61 -2.39 -0.02 -0.08 16 33 H 0.07 3.51 4.12 -2.38 -0.01 3.50 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.08 2.18 7.29 -2.38 -0.02 2.16 16 36 H 0.06 1.95 6.54 -2.39 -0.02 1.93 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.34 10.78 8.02 -89.69 -0.72 10.06 16 39 H 0.34 13.13 6.55 -89.70 -0.59 12.54 16 40 H 0.09 3.25 7.32 -2.39 -0.02 3.23 16 41 H 0.10 2.44 8.14 -2.38 -0.02 2.43 16 42 H 0.09 2.58 6.14 -2.39 -0.01 2.56 16 43 H 0.10 2.22 7.22 -2.39 -0.02 2.20 16 44 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -58.14 337.48 3.86 -54.29 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.31 Total: 38.82 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.31 Total: -4.26 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -2.12 Total: -104.84 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -58.14 3.86 -54.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.759 kcal (2) G-P(sol) polarization free energy of solvation -58.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds