Wall clock time and date at job start Mon Mar 30 2020 05:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46949 * 2 1 4 4 C 1.53005 * 109.47099 * 119.99579 * 2 1 3 5 5 N 1.46498 * 109.46922 * 178.13594 * 4 2 1 6 6 C 1.46500 * 120.00367 * 305.55594 * 5 4 2 7 7 C 1.50700 * 109.46968 * 270.00462 * 6 5 4 8 8 H 1.08004 * 120.00230 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99503 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00146 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46994 * 60.00193 * 11 9 7 13 13 H 1.48504 * 109.47074 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47481 * 300.00340 * 11 9 7 15 15 C 1.34781 * 119.99945 * 125.55946 * 5 4 2 16 16 O 1.21280 * 120.00029 * 177.57515 * 15 5 4 17 17 C 1.50696 * 119.99814 * 357.84310 * 15 5 4 18 18 C 1.53000 * 109.47496 * 285.85937 * 17 15 5 19 19 N 1.46906 * 109.47256 * 45.85852 * 17 15 5 20 20 C 1.53000 * 109.47175 * 165.85624 * 17 15 5 21 21 C 1.52999 * 117.49898 * 248.62391 * 20 17 15 22 22 C 1.53001 * 60.00342 * 252.50856 * 21 20 17 23 23 H 1.08995 * 109.47591 * 299.99914 * 1 2 3 24 24 H 1.09001 * 109.46947 * 60.00428 * 1 2 3 25 25 H 1.09001 * 109.47369 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47591 * 240.00086 * 2 1 3 27 27 H 1.09008 * 109.47158 * 170.82837 * 3 2 1 28 28 H 1.09001 * 109.47188 * 290.82362 * 3 2 1 29 29 H 1.08995 * 109.47533 * 50.82629 * 3 2 1 30 30 H 1.09001 * 109.46843 * 58.13666 * 4 2 1 31 31 H 1.09001 * 109.46898 * 298.13784 * 4 2 1 32 32 H 1.08999 * 109.46620 * 30.00140 * 6 5 4 33 33 H 1.08995 * 109.47286 * 150.00288 * 6 5 4 34 34 H 0.97001 * 119.99387 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.47497 * 71.40379 * 18 17 15 36 36 H 1.09005 * 109.47368 * 191.40931 * 18 17 15 37 37 H 1.09006 * 109.46830 * 311.40177 * 18 17 15 38 38 H 1.00897 * 110.99542 * 59.99337 * 19 17 15 39 39 H 1.00898 * 111.00121 * 183.95429 * 19 17 15 40 40 H 1.09001 * 115.54845 * 34.33067 * 20 17 15 41 41 H 1.09005 * 117.50327 * 359.97438 * 21 20 17 42 42 H 1.09005 * 117.50169 * 145.02037 * 21 20 17 43 43 H 1.09001 * 117.49910 * 252.51226 * 22 21 20 44 44 H 1.09001 * 117.49468 * 107.48516 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5042 -0.7602 1.2270 6 6 4.2047 -1.3168 0.0670 7 6 4.4196 -2.7944 0.2714 8 1 4.0699 -3.2710 1.1753 9 6 5.0628 -3.5377 -0.6954 10 7 5.4882 -2.9574 -1.7963 11 14 5.3299 -5.3690 -0.4417 12 1 4.0163 -6.0438 -0.2852 13 1 6.0387 -5.9336 -1.6183 14 1 6.1463 -5.5858 0.7796 15 6 4.2071 -0.2840 2.2739 16 8 5.4177 -0.3563 2.2747 17 6 3.4882 0.3328 3.4460 18 6 2.9681 1.7173 3.0542 19 7 2.3588 -0.5230 3.8333 20 6 4.4548 0.4658 4.6245 21 6 4.2084 -0.4244 5.8442 22 6 3.9114 1.0746 5.9188 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1176 1.4470 0.1638 28 1 1.8166 1.9069 -0.9605 29 1 1.5490 2.0015 0.7966 30 1 1.6495 -1.7387 1.2662 31 1 1.7041 -0.1883 2.1389 32 1 3.6059 -1.1574 -0.8298 33 1 5.1690 -0.8218 -0.0472 34 1 5.9410 -3.4803 -2.4763 35 1 2.1356 1.6094 2.3590 36 1 2.6303 2.2445 3.9466 37 1 3.7679 2.2846 2.5781 38 1 2.6765 -1.4438 4.0966 39 1 1.8221 -0.0996 4.5754 40 1 5.4898 0.6843 4.3613 41 1 3.3574 -1.1046 5.8073 42 1 5.0814 -0.7920 6.3837 43 1 4.5889 1.6933 6.5072 44 1 2.8652 1.3803 5.9305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:01 Heat of formation + Delta-G solvation = -6.031487 kcal Electronic energy + Delta-G solvation = -22465.084048 eV Core-core repulsion = 19418.526007 eV Total energy + Delta-G solvation = -3046.558041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12150 -37.56948 -36.17344 -33.50424 -33.39272 -31.98155 -29.31280 -27.44621 -26.77188 -25.41535 -24.38729 -23.00010 -22.31153 -20.28991 -19.35103 -18.02246 -16.64002 -16.36837 -16.20132 -15.41751 -14.92265 -14.69182 -14.39763 -14.14803 -13.82988 -13.39252 -13.16110 -12.71617 -12.26550 -12.21531 -12.06273 -11.85503 -11.70599 -11.52545 -11.46705 -11.16871 -11.03974 -10.90489 -10.65358 -10.53945 -10.50807 -10.34449 -10.11045 -10.02934 -9.93959 -9.49610 -8.92696 -8.34772 -8.21529 -7.42389 -5.96202 -3.99666 3.35914 3.39719 3.40777 3.47509 3.78770 4.07551 4.49820 4.51451 4.74725 4.90252 4.92242 5.12048 5.33782 5.36991 5.39913 5.45341 5.50814 5.54320 5.66402 5.77047 5.87524 5.90735 5.93977 6.03036 6.07690 6.11557 6.24146 6.27282 6.32614 6.40882 6.53053 6.62171 6.77340 6.91750 7.05876 7.23499 7.38675 7.55891 7.73248 8.01760 8.34590 8.63786 8.99761 9.24329 9.64685 11.11702 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015573 B = 0.007332 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.496085 B = 3818.197763 C = 4899.559480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C -0.144 4.144 4 C 0.096 3.904 5 N -0.576 5.576 6 C 0.243 3.757 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.517 3.483 16 O -0.547 6.547 17 C 0.128 3.872 18 C -0.147 4.147 19 N -0.822 5.822 20 C -0.160 4.160 21 C -0.184 4.184 22 C -0.180 4.180 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.350 0.650 39 H 0.338 0.662 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 9.097 11.150 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C -0.201 4.201 4 C -0.028 4.028 5 N -0.305 5.305 6 C 0.124 3.876 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.301 3.699 16 O -0.425 6.425 17 C 0.032 3.968 18 C -0.205 4.205 19 N -0.355 5.355 20 C -0.181 4.181 21 C -0.222 4.222 22 C -0.217 4.217 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.664 9.097 10.183 16.728 hybrid contribution 0.712 -1.255 0.911 1.706 sum -8.952 7.842 11.093 16.269 Atomic orbital electron populations 1.21710 0.95462 1.01458 1.00926 1.21544 0.95043 0.96551 1.00854 1.21915 1.01626 0.96080 1.00467 1.22266 0.80461 1.00881 0.99153 1.48023 1.06394 1.57489 1.18589 1.19254 0.92769 0.93331 0.82288 1.21400 1.37207 0.93458 1.03735 0.92669 1.24921 0.95519 0.98585 0.95149 1.69928 1.39522 1.36070 1.08112 0.86600 0.78257 0.85236 0.77544 1.20325 1.21261 1.20324 1.19876 0.87256 0.79131 0.83596 1.90658 1.14109 1.57771 1.79947 1.20503 0.89193 0.94383 0.92677 1.22126 1.02353 0.93749 1.02230 1.59290 1.23522 1.06731 1.45998 1.22979 1.02075 1.04272 0.88761 1.23048 1.03534 0.93288 1.02302 1.22952 1.01671 0.95948 1.01129 0.93074 0.93241 0.92791 0.90499 0.92351 0.93553 0.93073 0.92732 0.85571 0.94709 0.94458 0.92827 0.89831 0.92178 0.91691 0.83447 0.84769 0.86270 0.88905 0.88753 0.88889 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.18 37.15 0.34 -1.39 16 2 C -0.12 -1.90 2.74 -90.62 -0.25 -2.15 16 3 C -0.14 -2.09 8.10 37.16 0.30 -1.79 16 4 C 0.10 1.65 4.26 -4.04 -0.02 1.63 16 5 N -0.58 -12.26 1.81 -175.06 -0.32 -12.58 16 6 C 0.24 6.46 5.01 -5.19 -0.03 6.44 16 7 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 11 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.52 10.79 6.59 -10.99 -0.07 10.71 16 16 O -0.55 -13.98 15.25 5.56 0.08 -13.90 16 17 C 0.13 1.88 0.63 -132.75 -0.08 1.80 16 18 C -0.15 -1.84 8.34 37.16 0.31 -1.53 16 19 N -0.82 -9.94 4.99 -0.19 0.00 -9.94 16 20 C -0.16 -2.25 4.88 -90.62 -0.44 -2.70 16 21 C -0.18 -2.16 9.62 -26.73 -0.26 -2.42 16 22 C -0.18 -1.86 9.27 -26.73 -0.25 -2.11 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.45 6.42 -51.93 -0.33 1.11 16 27 H 0.06 0.99 7.41 -51.92 -0.38 0.61 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.63 6.24 -51.93 -0.32 0.30 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.13 1.83 3.25 -51.93 -0.17 1.66 16 32 H 0.04 0.94 6.11 -51.93 -0.32 0.62 16 33 H 0.04 1.13 7.46 -51.93 -0.39 0.74 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.08 1.02 3.34 -51.93 -0.17 0.85 16 36 H 0.06 0.60 6.96 -51.93 -0.36 0.24 16 37 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.35 4.54 7.50 -39.29 -0.29 4.24 16 39 H 0.34 3.11 7.92 -39.29 -0.31 2.80 16 40 H 0.12 2.00 7.33 -51.93 -0.38 1.62 16 41 H 0.09 0.98 6.15 -51.93 -0.32 0.66 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 0.80 7.19 -51.93 -0.37 0.43 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -32.62 334.13 -7.40 -40.02 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.05 Total: 7.69 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.86 Total: -7.24 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.42 Total: -48.97 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.62 -7.40 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.986 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds