Wall clock time and date at job start Mon Mar 30 2020 05:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47346 * 2 1 4 4 C 1.52999 * 109.47168 * 120.00086 * 2 1 3 5 5 N 1.46503 * 109.46628 * 66.20917 * 4 2 1 6 6 C 1.46500 * 120.00048 * 84.73084 * 5 4 2 7 7 C 1.50702 * 109.47614 * 84.74560 * 6 5 4 8 8 H 1.08007 * 119.99638 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00466 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99782 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00287 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47056 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46981 * 119.99987 * 11 9 7 14 14 H 1.48498 * 109.47223 * 239.99841 * 11 9 7 15 15 C 1.34777 * 119.99888 * 264.72069 * 5 4 2 16 16 O 1.21281 * 119.99872 * 4.99937 * 15 5 4 17 17 C 1.50700 * 120.00080 * 184.99226 * 15 5 4 18 18 N 1.46898 * 110.01571 * 46.97735 * 17 15 5 19 19 C 1.54269 * 110.03266 * 285.58361 * 17 15 5 20 20 C 1.54953 * 104.16283 * 217.13719 * 19 17 15 21 21 C 1.54891 * 102.77701 * 37.89022 * 20 19 17 22 22 C 1.53876 * 110.03049 * 168.36979 * 17 15 5 23 23 H 1.09007 * 109.46595 * 301.00729 * 1 2 3 24 24 H 1.09000 * 109.47265 * 61.00274 * 1 2 3 25 25 H 1.08991 * 109.47130 * 181.00607 * 1 2 3 26 26 H 1.09004 * 109.46747 * 240.00405 * 2 1 3 27 27 H 1.09002 * 109.47146 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.46774 * 300.00338 * 3 2 1 29 29 H 1.09000 * 109.46439 * 60.00307 * 3 2 1 30 30 H 1.08992 * 109.47064 * 306.21121 * 4 2 1 31 31 H 1.08999 * 109.47077 * 186.20297 * 4 2 1 32 32 H 1.08989 * 109.47344 * 324.74048 * 6 5 4 33 33 H 1.09001 * 109.47111 * 204.74237 * 6 5 4 34 34 H 0.96999 * 120.00203 * 180.02562 * 10 9 7 35 35 H 1.00900 * 111.00258 * 282.57830 * 18 17 15 36 36 H 1.00894 * 110.99772 * 46.53551 * 18 17 15 37 37 H 1.08996 * 110.48372 * 335.79000 * 19 17 15 38 38 H 1.09003 * 110.48311 * 98.42533 * 19 17 15 39 39 H 1.09005 * 110.72172 * 279.58122 * 20 19 17 40 40 H 1.09001 * 110.76614 * 156.22604 * 20 19 17 41 41 H 1.09007 * 110.48498 * 203.40886 * 21 20 19 42 42 H 1.08998 * 110.48756 * 80.76463 * 21 20 19 43 43 H 1.09004 * 110.03121 * 238.56527 * 22 17 15 44 44 H 1.08995 * 110.03518 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6774 -2.1389 1.1767 6 6 2.5346 -3.0779 0.4490 7 6 3.6432 -3.5509 1.3537 8 1 3.7034 -3.1879 2.3691 9 6 4.5810 -4.4461 0.8849 10 7 4.5080 -4.8877 -0.3518 11 14 5.9555 -5.0319 2.0061 12 1 5.8152 -4.3903 3.3379 13 1 5.8772 -6.5072 2.1560 14 1 7.2672 -4.6633 1.4154 15 6 0.5553 -2.5791 1.7797 16 8 -0.2009 -1.7893 2.3044 17 6 0.2402 -4.0526 1.8018 18 7 1.4309 -4.8155 2.1996 19 6 -0.2405 -4.5111 0.4094 20 6 -1.3453 -5.5540 0.7142 21 6 -2.0580 -4.9472 1.9483 22 6 -0.9147 -4.3300 2.7800 23 1 -0.3633 0.5294 0.8809 24 1 -0.3634 0.4982 -0.8988 25 1 -0.3633 -1.0274 0.0180 26 1 1.8933 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.5888 -0.2757 2.1357 31 1 3.1243 -0.6261 1.3065 32 1 2.9629 -2.5798 -0.4206 33 1 1.9422 -3.9328 0.1229 34 1 5.1676 -5.5179 -0.6815 35 1 2.0818 -4.8956 1.4328 36 1 1.8723 -4.4017 3.0069 37 1 -0.6531 -3.6701 -0.1477 38 1 0.5779 -4.9718 -0.1440 39 1 -0.9059 -6.5211 0.9588 40 1 -2.0349 -5.6429 -0.1252 41 1 -2.5658 -5.7263 2.5169 42 1 -2.7646 -4.1766 1.6401 43 1 -0.5920 -5.0315 3.5494 44 1 -1.2470 -3.3990 3.2391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:36 Heat of formation + Delta-G solvation = -50.500145 kcal Electronic energy + Delta-G solvation = -22743.432961 eV Core-core repulsion = 19694.946614 eV Total energy + Delta-G solvation = -3048.486347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.05455 -37.16281 -35.75556 -34.47499 -32.42605 -31.54999 -28.35077 -27.60838 -26.78793 -26.57073 -25.21551 -23.15106 -20.86072 -20.39639 -19.40402 -18.00170 -16.69937 -16.52534 -15.71102 -14.94636 -14.78365 -14.51314 -14.28199 -14.14103 -13.93371 -13.29881 -12.87626 -12.64593 -12.41060 -12.22009 -11.92749 -11.67629 -11.52728 -11.25360 -11.04099 -10.95910 -10.84319 -10.76499 -10.67504 -10.61594 -10.43223 -10.31942 -10.28307 -10.12621 -10.10629 -9.75392 -9.40202 -8.67599 -7.71633 -7.57379 -6.30874 -4.38889 3.17079 3.26516 3.28995 3.39822 3.91446 4.25139 4.98048 5.03489 5.06882 5.20908 5.25201 5.31796 5.43816 5.57348 5.62887 5.87119 5.89368 5.91626 5.99886 6.03619 6.06723 6.17409 6.19273 6.26296 6.28704 6.35656 6.38044 6.39937 6.45313 6.58632 6.66335 6.71991 6.73880 6.76782 6.79276 7.10657 7.48502 7.62774 7.87878 8.10380 8.33236 8.55738 8.67730 9.01390 9.28753 10.73849 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.009489 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.418676 B = 2950.151956 C = 4492.361813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.593 5.593 6 C 0.221 3.779 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.070 3.930 10 N -0.883 5.883 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.284 1.284 15 C 0.487 3.513 16 O -0.569 6.569 17 C 0.108 3.892 18 N -0.835 5.835 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.268 0.732 35 H 0.381 0.619 36 H 0.337 0.663 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.762 3.127 0.238 7.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.101 3.899 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.725 3.275 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.210 1.210 15 C 0.273 3.727 16 O -0.449 6.449 17 C 0.012 3.988 18 N -0.377 5.377 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.146 4.146 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.207 0.793 36 H 0.150 0.850 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.506 2.801 0.445 8.024 hybrid contribution 1.612 0.571 0.206 1.722 sum -5.895 3.372 0.651 6.822 Atomic orbital electron populations 1.21724 0.95015 1.01896 1.00353 1.21491 0.96350 0.95793 0.99489 1.21749 1.00859 0.96001 1.01288 1.21349 0.99842 0.81589 0.97221 1.48189 1.23471 1.08553 1.52046 1.19788 0.89487 0.88420 0.92244 1.21501 1.11213 1.26753 0.99073 0.91821 1.24938 0.97547 0.95864 0.95138 1.69920 1.35878 1.31240 1.14918 0.86435 0.81523 0.78795 0.80779 1.19606 1.20566 1.20961 1.21815 0.80853 0.92334 0.77657 1.90539 1.48942 1.57657 1.47749 1.21470 0.93939 0.87395 0.96036 1.59548 1.11341 1.52903 1.13896 1.22491 0.98936 0.98525 0.94973 1.22436 0.96805 0.98869 0.97254 1.22292 0.97455 0.99237 0.96641 1.22166 0.93380 1.01532 0.97559 0.92775 0.94102 0.92762 0.91199 0.92694 0.93007 0.92912 0.91140 0.90805 0.94829 0.93228 0.92267 0.79277 0.84955 0.91976 0.89959 0.90962 0.92229 0.92111 0.92204 0.90961 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.14 37.16 0.30 -1.87 16 2 C -0.11 -1.82 3.11 -90.62 -0.28 -2.10 16 3 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 4 C 0.12 2.30 4.96 -4.04 -0.02 2.28 16 5 N -0.59 -12.09 2.28 -175.06 -0.40 -12.49 16 6 C 0.22 4.94 4.62 -5.19 -0.02 4.92 16 7 C -0.55 -13.05 6.29 -34.44 -0.22 -13.27 16 8 H 0.06 1.57 7.66 -52.48 -0.40 1.17 16 9 C 0.07 1.72 5.28 -17.82 -0.09 1.63 16 10 N -0.88 -22.73 13.29 55.43 0.74 -21.99 16 11 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.49 10.01 5.20 -10.99 -0.06 9.95 16 16 O -0.57 -12.49 13.40 5.56 0.07 -12.42 16 17 C 0.11 2.04 0.83 -131.63 -0.11 1.93 16 18 N -0.83 -16.72 8.03 0.72 0.01 -16.72 16 19 C -0.11 -1.95 5.14 -25.04 -0.13 -2.08 16 20 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 21 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 22 C -0.11 -1.85 6.17 -25.61 -0.16 -2.01 16 23 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.00 6.29 -51.93 -0.33 0.68 16 26 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.34 7.34 -51.93 -0.38 0.96 16 31 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.03 0.81 8.01 -51.94 -0.42 0.40 16 33 H 0.05 1.14 3.34 -51.93 -0.17 0.96 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.28 16 35 H 0.38 8.39 3.91 -39.29 -0.15 8.24 16 36 H 0.34 6.97 8.10 -39.29 -0.32 6.65 16 37 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16 38 H 0.08 1.55 6.33 -51.93 -0.33 1.22 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 44 H 0.08 1.44 6.47 -51.93 -0.34 1.10 16 LS Contribution 331.46 15.07 5.00 5.00 Total: -1.00 -25.25 331.46 -7.83 -33.08 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -7.43 Total: 16.83 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.79 Total: -5.96 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.34 Total: -51.19 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.25 -7.83 -33.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.421 kcal (2) G-P(sol) polarization free energy of solvation -25.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds