Wall clock time and date at job start Mon Mar 30 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47539 * 2 1 4 4 C 1.53003 * 109.47248 * 119.99983 * 2 1 3 5 5 N 1.46492 * 109.47745 * 174.10638 * 4 2 1 6 6 C 1.46502 * 120.00353 * 276.68883 * 5 4 2 7 7 C 1.50699 * 109.47034 * 269.99795 * 6 5 4 8 8 H 1.08005 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00221 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00008 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99578 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46959 * 90.00418 * 11 9 7 13 13 H 1.48501 * 109.46785 * 210.00059 * 11 9 7 14 14 H 1.48497 * 109.47429 * 330.00064 * 11 9 7 15 15 C 1.34775 * 120.00062 * 96.68356 * 5 4 2 16 16 O 1.21283 * 120.00302 * 185.41172 * 15 5 4 17 17 C 1.50702 * 119.99815 * 5.40421 * 15 5 4 18 18 C 1.53007 * 109.47254 * 174.69429 * 17 15 5 19 19 N 1.46898 * 109.47114 * 180.02562 * 18 17 15 20 20 C 1.46902 * 110.99917 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.49912 * 223.74838 * 20 19 18 22 22 C 1.52999 * 117.50006 * 155.08818 * 20 19 18 23 23 H 1.08996 * 109.47437 * 300.00301 * 1 2 3 24 24 H 1.09006 * 109.46914 * 60.00011 * 1 2 3 25 25 H 1.09002 * 109.47088 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47149 * 239.99463 * 2 1 3 27 27 H 1.09002 * 109.46846 * 304.70751 * 3 2 1 28 28 H 1.08999 * 109.47073 * 64.70142 * 3 2 1 29 29 H 1.08997 * 109.47525 * 184.70932 * 3 2 1 30 30 H 1.09001 * 109.46779 * 54.10342 * 4 2 1 31 31 H 1.08999 * 109.46802 * 294.10961 * 4 2 1 32 32 H 1.08996 * 109.46703 * 29.99330 * 6 5 4 33 33 H 1.08997 * 109.47252 * 149.99567 * 6 5 4 34 34 H 0.97005 * 120.00021 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46955 * 54.69712 * 17 15 5 36 36 H 1.08993 * 109.47661 * 294.69898 * 17 15 5 37 37 H 1.09002 * 109.46909 * 60.00254 * 18 17 15 38 38 H 1.09001 * 109.47027 * 300.00542 * 18 17 15 39 39 H 1.00904 * 110.99636 * 56.04933 * 19 18 17 40 40 H 1.08996 * 115.54693 * 9.41775 * 20 19 18 41 41 H 1.09004 * 117.49983 * 359.97438 * 21 20 19 42 42 H 1.09005 * 117.49819 * 145.01788 * 21 20 19 43 43 H 1.08995 * 117.49693 * 214.98411 * 22 20 19 44 44 H 1.09001 * 117.49410 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4980 -0.8453 1.1806 6 6 4.1050 -1.9450 0.4264 7 6 4.2993 -3.1307 1.3360 8 1 4.0010 -3.0710 2.3723 9 6 4.8580 -4.2918 0.8453 10 7 5.0271 -5.3267 1.6390 11 14 5.3733 -4.3953 -0.9472 12 1 6.7843 -3.9529 -1.0829 13 1 5.2467 -5.7978 -1.4184 14 1 4.4984 -3.5174 -1.7653 15 6 4.2812 0.0522 1.8111 16 8 5.4855 0.0081 1.6743 17 6 3.6605 1.1107 2.6859 18 6 4.7646 1.9094 3.3816 19 7 4.1595 2.9408 4.2349 20 6 5.1921 3.7296 4.9200 21 6 4.9760 4.0407 6.4023 22 6 4.8230 5.1486 5.3572 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5140 -0.8900 27 1 1.6095 1.9800 -0.8448 28 1 1.7472 1.9314 0.9291 29 1 3.1268 1.4436 -0.0844 30 1 1.5930 -1.7139 1.3036 31 1 1.7653 -0.1501 2.1361 32 1 3.4504 -2.2239 -0.3993 33 1 5.0704 -1.6266 0.0332 34 1 5.4205 -6.1434 1.2938 35 1 3.0273 0.6367 3.4360 36 1 3.0580 1.7812 2.0732 37 1 5.3978 2.3834 2.6316 38 1 5.3670 1.2388 3.9944 39 1 3.5179 2.5312 4.8973 40 1 6.2151 3.5559 4.5861 41 1 4.0674 3.6603 6.8692 42 1 5.8569 4.0720 7.0436 43 1 5.6032 5.9083 5.3113 44 1 3.8141 5.4969 5.1361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037822667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:24 Heat of formation + Delta-G solvation = -21.383397 kcal Electronic energy + Delta-G solvation = -21101.076539 eV Core-core repulsion = 18053.852789 eV Total energy + Delta-G solvation = -3047.223750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.47748 -37.93646 -36.39269 -34.27319 -33.56721 -32.27371 -29.87513 -27.86633 -27.04895 -25.61586 -23.41578 -22.51572 -21.51560 -21.32053 -20.26011 -18.13300 -16.93189 -16.82805 -15.94675 -15.75743 -15.46290 -14.99662 -14.51829 -14.26314 -13.86981 -13.55550 -13.25618 -12.83493 -12.68667 -12.46508 -12.40532 -12.19077 -11.87107 -11.69952 -11.66645 -11.45891 -11.23665 -11.01644 -10.97522 -10.75393 -10.62891 -10.50620 -10.45994 -10.34556 -10.11554 -9.53550 -8.98781 -8.58983 -8.33115 -7.66930 -6.09124 -4.07723 3.29226 3.35087 3.35989 3.37341 3.60561 3.75752 4.15094 4.39704 4.76327 4.83376 4.99057 5.00798 5.05867 5.09130 5.17586 5.24579 5.31916 5.43217 5.48744 5.56719 5.60898 5.69834 5.73314 5.76405 5.84127 5.91160 5.98263 6.03755 6.11161 6.13860 6.15978 6.23805 6.42786 6.49873 6.73512 6.95396 6.98003 7.25157 7.37661 7.61845 8.28367 8.47285 8.92521 9.00408 9.51680 11.04270 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016756 B = 0.004890 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.677781 B = 5724.991335 C = 6849.590533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.149 4.149 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.216 3.784 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.513 3.487 16 O -0.546 6.546 17 C -0.148 4.148 18 C 0.076 3.924 19 N -0.661 5.661 20 C 0.025 3.975 21 C -0.208 4.208 22 C -0.173 4.173 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.340 0.660 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 17.043 2.731 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.009 4.009 5 N -0.322 5.322 6 C 0.095 3.905 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.188 4.188 18 C -0.053 4.053 19 N -0.291 5.291 20 C -0.085 4.085 21 C -0.247 4.247 22 C -0.211 4.211 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.894 17.230 2.117 18.678 hybrid contribution 0.502 -0.947 -0.147 1.082 sum -6.392 16.283 1.970 17.603 Atomic orbital electron populations 1.21759 0.94888 1.01887 1.01494 1.21573 0.95572 0.96617 0.99927 1.21973 1.01402 0.95878 1.01310 1.21580 0.81251 1.01303 0.96801 1.47847 1.05479 1.27505 1.51325 1.19622 0.94089 0.84814 0.91962 1.21341 1.41513 0.95691 0.98178 0.90837 1.24849 0.94981 0.95468 0.97680 1.69896 1.44520 1.03668 1.35584 0.86852 0.79907 0.77387 0.85572 1.19923 1.21088 1.19044 1.20225 0.87092 0.82102 0.80592 1.90657 1.14650 1.73712 1.63434 1.21856 0.99616 0.97465 0.99869 1.21710 0.95600 0.91924 0.96080 1.60239 1.17179 1.26799 1.24842 1.22408 0.95769 0.96839 0.93529 1.23431 1.03367 1.05158 0.92775 1.23112 1.03115 0.92038 1.02853 0.92710 0.92834 0.92426 0.90734 0.92983 0.92404 0.92560 0.90054 0.91035 0.95349 0.94550 0.92581 0.89697 0.87866 0.90001 0.94039 0.84100 0.87206 0.88755 0.88853 0.88891 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.12 -1.55 3.11 -90.62 -0.28 -1.83 16 3 C -0.15 -1.81 7.59 37.16 0.28 -1.53 16 4 C 0.11 1.79 4.89 -4.04 -0.02 1.77 16 5 N -0.59 -11.95 2.26 -175.06 -0.40 -12.35 16 6 C 0.22 5.27 4.29 -5.19 -0.02 5.25 16 7 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 8 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 11 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 15 C 0.51 10.29 6.45 -10.99 -0.07 10.22 16 16 O -0.55 -13.30 15.54 5.56 0.09 -13.21 16 17 C -0.15 -2.15 4.31 -27.88 -0.12 -2.27 16 18 C 0.08 1.08 4.84 -3.82 -0.02 1.06 16 19 N -0.66 -7.71 6.78 -106.72 -0.72 -8.43 16 20 C 0.03 0.27 6.31 -67.71 -0.43 -0.15 16 21 C -0.21 -1.88 10.23 -26.69 -0.27 -2.15 16 22 C -0.17 -1.58 10.46 -26.69 -0.28 -1.86 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.11 8.01 -51.92 -0.42 0.69 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.63 6.49 -51.93 -0.34 0.29 16 29 H 0.06 0.81 6.87 -51.93 -0.36 0.45 16 30 H 0.08 1.35 8.12 -51.93 -0.42 0.92 16 31 H 0.07 0.94 6.10 -51.93 -0.32 0.62 16 32 H 0.03 0.67 6.99 -51.93 -0.36 0.30 16 33 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.08 1.12 7.37 -51.93 -0.38 0.73 16 36 H 0.10 1.32 4.80 -51.93 -0.25 1.07 16 37 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.34 3.54 8.52 -39.29 -0.33 3.21 16 40 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 41 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -32.86 349.42 -8.74 -41.60 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.75 Total: 3.19 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.33 Total: -6.14 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.35 Total: -47.73 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.86 -8.74 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037822667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.215 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds