Wall clock time and date at job start Mon Mar 30 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.53004 * 109.47375 * 240.00272 * 2 1 3 5 5 N 1.46896 * 109.47177 * 120.00176 * 2 1 3 6 6 C 1.46899 * 111.00039 * 59.99866 * 5 2 1 7 7 C 1.53006 * 109.47370 * 180.02562 * 6 5 2 8 8 C 1.50688 * 109.47258 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00033 * 2.78222 * 8 7 6 10 10 N 1.34779 * 120.00125 * 182.78449 * 8 7 6 11 11 C 1.46496 * 120.00021 * 5.94110 * 10 8 7 12 12 C 1.50697 * 109.47091 * 270.00492 * 11 10 8 13 13 H 1.07996 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00014 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00013 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99941 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46864 * 90.00391 * 16 14 12 18 18 H 1.48497 * 109.47246 * 210.00630 * 16 14 12 19 19 H 1.48497 * 109.47041 * 330.00387 * 16 14 12 20 20 C 1.46500 * 120.00204 * 185.94559 * 10 8 7 21 21 C 1.53006 * 117.50049 * 16.38754 * 20 10 8 22 22 C 1.53005 * 117.49458 * 307.72992 * 20 10 8 23 23 H 1.08995 * 109.47341 * 300.00484 * 1 2 3 24 24 H 1.09005 * 109.47185 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46890 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47411 * 299.99677 * 3 2 1 28 28 H 1.09004 * 109.47019 * 60.00016 * 3 2 1 29 29 H 1.09005 * 109.46638 * 299.99859 * 4 2 1 30 30 H 1.08992 * 109.46846 * 59.99724 * 4 2 1 31 31 H 1.08994 * 109.47211 * 180.02562 * 4 2 1 32 32 H 1.00898 * 111.00410 * 183.95365 * 5 2 1 33 33 H 1.09002 * 109.47142 * 60.00250 * 6 5 2 34 34 H 1.09001 * 109.46862 * 300.00066 * 6 5 2 35 35 H 1.09002 * 109.47014 * 59.99889 * 7 6 5 36 36 H 1.08997 * 109.46451 * 300.00276 * 7 6 5 37 37 H 1.09003 * 109.47131 * 30.00365 * 11 10 8 38 38 H 1.09002 * 109.47277 * 150.00323 * 11 10 8 39 39 H 0.97002 * 120.00050 * 179.97438 * 15 14 12 40 40 H 1.08994 * 115.55389 * 162.06565 * 20 10 8 41 41 H 1.09000 * 117.49605 * 0.02562 * 21 20 10 42 42 H 1.09000 * 117.49813 * 145.01809 * 21 20 10 43 43 H 1.09003 * 117.49499 * 214.97784 * 22 20 10 44 44 H 1.08995 * 117.50051 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0771 -2.7704 2.4942 8 6 1.5934 -4.1971 2.5293 9 8 0.9369 -4.6377 1.6096 10 7 1.8903 -4.9836 3.5828 11 6 2.5696 -4.4179 4.7509 12 6 4.0612 -4.5303 4.5678 13 1 4.4629 -4.9788 3.6712 14 6 4.9131 -4.0616 5.5454 15 7 6.2148 -4.1602 5.3859 16 14 4.2182 -3.2866 7.0966 17 1 4.0149 -4.3369 8.1264 18 1 5.1690 -2.2677 7.6095 19 1 2.9183 -2.6389 6.7867 20 6 1.5336 -6.4044 3.5597 21 6 1.1867 -7.0239 2.2044 22 6 0.0828 -6.7633 3.2323 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 3.0261 -0.6501 1.2559 33 1 1.9121 -2.6118 0.3519 34 1 0.4587 -2.0979 1.2419 35 1 1.7133 -2.2420 3.3754 36 1 3.1670 -2.7559 2.4860 37 1 2.2948 -3.3685 4.8581 38 1 2.2711 -4.9649 5.6452 39 1 6.8141 -3.8301 6.0735 40 1 2.0569 -7.0322 4.2809 41 1 1.2242 -6.3744 1.3298 42 1 1.4816 -8.0593 2.0340 43 1 -0.3482 -7.6275 3.7378 44 1 -0.6064 -5.9423 3.0345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038099496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:02 Heat of formation + Delta-G solvation = -7.779393 kcal Electronic energy + Delta-G solvation = -21408.093980 eV Core-core repulsion = 18361.460144 eV Total energy + Delta-G solvation = -3046.633836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75878 -38.25261 -35.91885 -34.34185 -32.75965 -32.17324 -28.60100 -27.68924 -27.42199 -27.29552 -23.52940 -22.42048 -21.84186 -21.20769 -19.25957 -18.22485 -17.07992 -16.30968 -15.87275 -15.46997 -15.17622 -14.72246 -14.30944 -14.13297 -13.87162 -13.56582 -13.17141 -12.87588 -12.72092 -12.27735 -12.18333 -12.06973 -12.01501 -11.71739 -11.67337 -11.41742 -11.22934 -11.05217 -10.90547 -10.80538 -10.61579 -10.56813 -10.43978 -10.04633 -9.79598 -9.58896 -8.79996 -8.69583 -8.23896 -7.56458 -6.23080 -4.25031 3.17859 3.23635 3.25963 3.27278 3.65685 4.25846 4.30039 4.49551 4.82941 4.92793 5.06172 5.14286 5.25516 5.40240 5.45230 5.50886 5.53948 5.59536 5.61242 5.71132 5.75103 5.80844 5.86433 5.89908 6.00146 6.08364 6.14027 6.20995 6.22964 6.29048 6.37472 6.41582 6.53922 6.55338 6.66928 6.84142 7.22465 7.40594 7.46304 7.55440 8.10009 8.39302 8.80887 8.91052 9.36164 10.89427 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.006146 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.558329 B = 4554.421176 C = 6033.450263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.105 3.895 3 C -0.138 4.138 4 C -0.183 4.183 5 N -0.681 5.681 6 C 0.073 3.927 7 C -0.136 4.136 8 C 0.522 3.478 9 O -0.566 6.566 10 N -0.563 5.563 11 C 0.210 3.790 12 C -0.541 4.541 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.891 5.891 16 Si 0.872 3.128 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.086 3.914 21 C -0.196 4.196 22 C -0.195 4.195 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.342 0.658 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 5.847 -7.325 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 C -0.196 4.196 4 C -0.242 4.242 5 N -0.313 5.313 6 C -0.057 4.057 7 C -0.176 4.176 8 C 0.311 3.689 9 O -0.448 6.448 10 N -0.291 5.291 11 C 0.089 3.911 12 C -0.579 4.579 13 H 0.096 0.904 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.698 3.302 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.019 4.019 21 C -0.234 4.234 22 C -0.234 4.234 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.998 5.919 -7.257 13.699 hybrid contribution 0.604 -0.135 0.410 0.742 sum -9.394 5.784 -6.847 12.984 Atomic orbital electron populations 1.21883 0.94064 1.02205 1.01602 1.20906 0.95498 0.93982 0.88240 1.21819 1.00917 0.94941 1.01879 1.22576 1.01250 1.01584 0.98809 1.60646 1.16448 1.15334 1.38833 1.21737 1.00668 0.86919 0.96326 1.21586 1.03832 0.92424 0.99712 1.20485 0.78957 0.88154 0.81263 1.90444 1.41222 1.75284 1.37887 1.47346 1.56540 1.06993 1.18197 1.19852 0.93521 0.94346 0.83416 1.21366 0.88443 1.41364 1.06776 0.90384 1.24871 0.94664 0.95106 0.98020 1.69890 1.02153 1.46022 1.34745 0.86914 0.79570 0.79819 0.83862 1.19980 1.20849 1.18762 1.21552 0.96553 0.83444 1.00333 1.23744 1.02175 1.01007 0.96445 1.23203 0.92769 1.02857 1.04532 0.91950 0.92736 0.92313 0.92749 0.92481 0.91828 0.91966 0.92442 0.92680 0.83979 0.94259 0.90569 0.88743 0.87737 0.94377 0.95169 0.92348 0.85644 0.84779 0.90088 0.89454 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.24 37.15 0.31 -1.25 16 2 C 0.10 1.21 0.97 -131.60 -0.13 1.08 16 3 C -0.14 -1.38 8.73 37.16 0.32 -1.06 16 4 C -0.18 -2.05 8.23 37.16 0.31 -1.75 16 5 N -0.68 -9.20 6.09 -99.96 -0.61 -9.81 16 6 C 0.07 1.12 4.19 -3.82 -0.02 1.10 16 7 C -0.14 -2.39 4.74 -27.89 -0.13 -2.52 16 8 C 0.52 10.42 7.46 -10.99 -0.08 10.33 16 9 O -0.57 -11.72 11.73 5.55 0.07 -11.66 16 10 N -0.56 -11.60 2.82 -167.47 -0.47 -12.07 16 11 C 0.21 4.62 4.03 -5.20 -0.02 4.60 16 12 C -0.54 -14.07 9.84 -34.44 -0.34 -14.41 16 13 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 16 Si 0.87 19.70 27.47 -169.99 -4.67 15.03 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 20 C 0.09 1.62 6.60 -67.92 -0.45 1.18 16 21 C -0.20 -3.45 9.63 -26.69 -0.26 -3.71 16 22 C -0.19 -3.22 9.88 -26.69 -0.26 -3.49 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.77 6.40 -51.93 -0.33 0.44 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 4.55 8.72 -39.29 -0.34 4.21 16 33 H 0.04 0.64 6.23 -51.93 -0.32 0.31 16 34 H 0.08 1.21 6.29 -51.93 -0.33 0.88 16 35 H 0.09 1.64 7.08 -51.93 -0.37 1.28 16 36 H 0.10 1.98 8.04 -51.93 -0.42 1.56 16 37 H 0.04 0.82 5.47 -51.93 -0.28 0.54 16 38 H 0.03 0.65 7.50 -51.93 -0.39 0.26 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.28 8.14 -51.93 -0.42 1.85 16 41 H 0.13 2.65 5.22 -52.11 -0.27 2.38 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.63 7.60 -51.93 -0.39 1.24 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -28.14 343.57 -8.18 -36.32 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.60 Total: 9.78 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.85 Total: -7.93 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.31 Total: -46.72 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.14 -8.18 -36.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.542 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds