Wall clock time and date at job start Mon Mar 30 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47240 * 2 1 4 4 C 1.53004 * 109.47375 * 240.00272 * 2 1 3 5 5 N 1.46896 * 109.47177 * 120.00176 * 2 1 3 6 6 C 1.46899 * 111.00039 * 59.99866 * 5 2 1 7 7 C 1.53006 * 109.47370 * 180.02562 * 6 5 2 8 8 C 1.50688 * 109.47258 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00033 * 2.78222 * 8 7 6 10 10 N 1.34779 * 120.00125 * 182.78449 * 8 7 6 11 11 C 1.46496 * 120.00021 * 5.94110 * 10 8 7 12 12 C 1.50697 * 109.47091 * 270.00492 * 11 10 8 13 13 H 1.07996 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00014 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00013 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99941 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46864 * 90.00391 * 16 14 12 18 18 H 1.48497 * 109.47246 * 210.00630 * 16 14 12 19 19 H 1.48497 * 109.47041 * 330.00387 * 16 14 12 20 20 C 1.46500 * 120.00204 * 185.94559 * 10 8 7 21 21 C 1.53006 * 117.50049 * 16.38754 * 20 10 8 22 22 C 1.53005 * 117.49458 * 307.72992 * 20 10 8 23 23 H 1.08995 * 109.47341 * 300.00484 * 1 2 3 24 24 H 1.09005 * 109.47185 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46890 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47411 * 299.99677 * 3 2 1 28 28 H 1.09004 * 109.47019 * 60.00016 * 3 2 1 29 29 H 1.09005 * 109.46638 * 299.99859 * 4 2 1 30 30 H 1.08992 * 109.46846 * 59.99724 * 4 2 1 31 31 H 1.08994 * 109.47211 * 180.02562 * 4 2 1 32 32 H 1.00898 * 111.00410 * 183.95365 * 5 2 1 33 33 H 1.09002 * 109.47142 * 60.00250 * 6 5 2 34 34 H 1.09001 * 109.46862 * 300.00066 * 6 5 2 35 35 H 1.09002 * 109.47014 * 59.99889 * 7 6 5 36 36 H 1.08997 * 109.46451 * 300.00276 * 7 6 5 37 37 H 1.09003 * 109.47131 * 30.00365 * 11 10 8 38 38 H 1.09002 * 109.47277 * 150.00323 * 11 10 8 39 39 H 0.97002 * 120.00050 * 179.97438 * 15 14 12 40 40 H 1.08994 * 115.55389 * 162.06565 * 20 10 8 41 41 H 1.09000 * 117.49605 * 0.02562 * 21 20 10 42 42 H 1.09000 * 117.49813 * 145.01809 * 21 20 10 43 43 H 1.09003 * 117.49499 * 214.97784 * 22 20 10 44 44 H 1.08995 * 117.50051 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0771 -2.7704 2.4942 8 6 1.5934 -4.1971 2.5293 9 8 0.9369 -4.6377 1.6096 10 7 1.8903 -4.9836 3.5828 11 6 2.5696 -4.4179 4.7509 12 6 4.0612 -4.5303 4.5678 13 1 4.4629 -4.9788 3.6712 14 6 4.9131 -4.0616 5.5454 15 7 6.2148 -4.1602 5.3859 16 14 4.2182 -3.2866 7.0966 17 1 4.0149 -4.3369 8.1264 18 1 5.1690 -2.2677 7.6095 19 1 2.9183 -2.6389 6.7867 20 6 1.5336 -6.4044 3.5597 21 6 1.1867 -7.0239 2.2044 22 6 0.0828 -6.7633 3.2323 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 3.0261 -0.6501 1.2559 33 1 1.9121 -2.6118 0.3519 34 1 0.4587 -2.0979 1.2419 35 1 1.7133 -2.2420 3.3754 36 1 3.1670 -2.7559 2.4860 37 1 2.2948 -3.3685 4.8581 38 1 2.2711 -4.9649 5.6452 39 1 6.8141 -3.8301 6.0735 40 1 2.0569 -7.0322 4.2809 41 1 1.2242 -6.3744 1.3298 42 1 1.4816 -8.0593 2.0340 43 1 -0.3482 -7.6275 3.7378 44 1 -0.6064 -5.9423 3.0345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038099496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:02 Heat of formation + Delta-G solvation = -24.918291 kcal Electronic energy + Delta-G solvation = -21408.837178 eV Core-core repulsion = 18361.460144 eV Total energy + Delta-G solvation = -3047.377034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30515 -39.29792 -37.40670 -36.03836 -34.30889 -33.79838 -29.93331 -29.49373 -28.29888 -28.19697 -24.94683 -24.25126 -23.23802 -22.58448 -20.32653 -19.69973 -19.08513 -17.90988 -17.27893 -16.76644 -16.51467 -16.13191 -15.88792 -15.20784 -15.13226 -14.83073 -14.74953 -14.41071 -14.01413 -13.85479 -13.76384 -13.30628 -13.11874 -12.92129 -12.77694 -12.63548 -12.60882 -12.38740 -12.24322 -12.20992 -11.97677 -11.82876 -11.73690 -11.55424 -11.53456 -11.21438 -10.78872 -10.32295 -9.35560 -9.17814 -8.29210 -6.36697 1.41603 1.43470 1.52745 1.64704 2.15245 2.35477 3.04703 3.06766 3.15567 3.76137 3.91963 3.97698 4.02764 4.09943 4.16408 4.23438 4.25346 4.33729 4.63468 4.65778 4.69212 4.70781 4.81234 4.83051 4.84852 4.87866 4.92171 4.99087 5.00118 5.04255 5.08852 5.13177 5.24509 5.37890 5.40592 5.44177 5.45331 5.86244 6.12596 6.17888 6.45853 6.60497 6.69912 7.24327 7.34426 8.86954 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.006146 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.558329 B = 4554.421176 C = 6033.450263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.100 3.900 3 C -0.133 4.133 4 C -0.179 4.179 5 N -0.683 5.683 6 C 0.089 3.911 7 C -0.128 4.128 8 C 0.514 3.486 9 O -0.575 6.575 10 N -0.571 5.571 11 C 0.218 3.782 12 C -0.538 4.538 13 H 0.029 0.971 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.238 1.238 20 C 0.058 3.942 21 C -0.198 4.198 22 C -0.168 4.168 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.342 0.658 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.268 0.732 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 6.756 -6.650 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 C -0.191 4.191 4 C -0.238 4.238 5 N -0.314 5.314 6 C -0.041 4.041 7 C -0.168 4.168 8 C 0.304 3.696 9 O -0.458 6.458 10 N -0.299 5.299 11 C 0.097 3.903 12 C -0.577 4.577 13 H 0.048 0.952 14 C -0.178 4.178 15 N -0.581 5.581 16 Si 0.764 3.236 17 H -0.191 1.191 18 H -0.210 1.210 19 H -0.161 1.161 20 C -0.047 4.047 21 C -0.236 4.236 22 C -0.206 4.206 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.138 0.862 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.889 6.821 -6.605 15.215 hybrid contribution 1.216 -0.477 0.080 1.308 sum -10.673 6.344 -6.525 14.026 Atomic orbital electron populations 1.21870 0.93619 1.01534 1.02488 1.21070 0.95887 0.94734 0.87405 1.21784 1.00961 0.93655 1.02660 1.22529 1.01100 1.00707 0.99481 1.60672 1.16494 1.13967 1.40300 1.21503 1.00212 0.87797 0.94590 1.21531 1.02558 0.91517 1.01181 1.20870 0.78847 0.88939 0.80975 1.90448 1.41666 1.75684 1.37994 1.47390 1.56482 1.07977 1.18004 1.19675 0.90814 0.95369 0.84470 1.21466 0.90861 1.40434 1.04926 0.95237 1.25758 0.94693 0.95612 1.01707 1.70048 1.03943 1.47842 1.36293 0.85811 0.79712 0.78975 0.79134 1.19071 1.21047 1.16091 1.21813 0.98763 0.82721 1.01403 1.23695 1.03095 1.01610 0.95180 1.23206 0.91167 1.03245 1.02992 0.92178 0.90755 0.93723 0.92688 0.90653 0.92086 0.93694 0.90643 0.92873 0.83981 0.95483 0.90827 0.88098 0.89515 0.93109 0.93784 0.92268 0.85293 0.87150 0.87878 0.86169 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.24 71.98 0.59 -2.27 16 2 C 0.10 2.17 0.97 3.53 0.00 2.18 16 3 C -0.13 -2.40 8.73 71.98 0.63 -1.77 16 4 C -0.18 -3.85 8.23 71.98 0.59 -3.25 16 5 N -0.68 -18.11 6.09 -470.17 -2.86 -20.97 16 6 C 0.09 2.74 4.19 86.31 0.36 3.10 16 7 C -0.13 -4.55 4.74 29.85 0.14 -4.40 16 8 C 0.51 20.63 7.46 87.65 0.65 21.29 16 9 O -0.58 -24.02 11.73 -3.05 -0.04 -24.05 16 10 N -0.57 -23.39 2.82 -802.14 -2.26 -25.65 16 11 C 0.22 9.43 4.03 85.63 0.35 9.78 16 12 C -0.54 -28.51 9.84 25.60 0.25 -28.25 16 13 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 14 C 0.02 1.14 5.47 84.66 0.46 1.61 16 15 N -0.94 -55.52 13.96 21.45 0.30 -55.22 16 16 Si 0.94 39.78 27.47 68.60 1.88 41.66 16 17 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.24 -9.02 6.54 99.48 0.65 -8.37 16 20 C 0.06 2.11 6.60 44.99 0.30 2.41 16 21 C -0.20 -6.80 9.63 30.62 0.29 -6.51 16 22 C -0.17 -5.20 9.88 30.62 0.30 -4.90 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.04 1.05 6.40 -2.39 -0.02 1.03 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.04 1.11 6.40 -2.38 -0.02 1.10 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.34 9.05 8.72 -89.70 -0.78 8.26 16 33 H 0.03 0.90 6.23 -2.39 -0.01 0.88 16 34 H 0.07 2.33 6.29 -2.39 -0.02 2.31 16 35 H 0.10 3.43 7.08 -2.39 -0.02 3.41 16 36 H 0.09 3.40 8.04 -2.39 -0.02 3.38 16 37 H 0.05 2.08 5.47 -2.39 -0.01 2.07 16 38 H 0.04 1.80 7.50 -2.39 -0.02 1.79 16 39 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.13 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.11 4.39 5.22 -5.27 -0.03 4.36 16 42 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.08 2.70 7.60 -2.39 -0.02 2.68 16 Total: -1.00 -61.56 343.57 2.07 -59.49 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.12 Total: 35.73 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.93 Total: -11.00 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -4.83 Total: -101.83 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.05 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 1.88 Total: 41.66 kcal Total: -61.56 2.07 -59.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.573 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds