Wall clock time and date at job start Mon Mar 30 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 C 1.52994 * 109.47264 * 240.00157 * 2 1 3 5 5 N 1.46902 * 109.47135 * 185.93933 * 4 2 1 6 6 C 1.46900 * 111.00165 * 196.66197 * 5 4 2 7 7 C 1.50697 * 109.47529 * 162.71164 * 6 5 4 8 8 O 1.21290 * 119.99725 * 0.24386 * 7 6 5 9 9 N 1.34776 * 120.00528 * 180.24949 * 7 6 5 10 10 C 1.46499 * 119.99432 * 359.97438 * 9 7 6 11 11 C 1.46493 * 120.00198 * 179.97438 * 9 7 6 12 12 C 1.50700 * 109.47226 * 90.00072 * 11 9 7 13 13 H 1.07996 * 120.00061 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99872 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99755 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00342 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47262 * 89.99694 * 16 14 12 18 18 H 1.48495 * 109.47398 * 209.99565 * 16 14 12 19 19 H 1.48500 * 109.46965 * 329.99943 * 16 14 12 20 20 C 1.46899 * 111.00353 * 72.70648 * 5 4 2 21 21 C 1.52997 * 117.50086 * 127.50277 * 20 5 4 22 22 C 1.53001 * 117.49680 * 58.84295 * 20 5 4 23 23 H 1.09007 * 109.46571 * 184.87624 * 1 2 3 24 24 H 1.08993 * 109.47113 * 304.87221 * 1 2 3 25 25 H 1.08995 * 109.47289 * 64.87886 * 1 2 3 26 26 H 1.08998 * 109.47185 * 119.99664 * 2 1 3 27 27 H 1.08998 * 109.47590 * 300.00220 * 3 2 1 28 28 H 1.09006 * 109.47025 * 60.00292 * 3 2 1 29 29 H 1.09006 * 109.47231 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47359 * 305.93369 * 4 2 1 31 31 H 1.08998 * 109.47258 * 65.94076 * 4 2 1 32 32 H 1.09006 * 109.46809 * 282.70847 * 6 5 4 33 33 H 1.09001 * 109.47344 * 42.70648 * 6 5 4 34 34 H 1.09005 * 109.47261 * 90.00331 * 10 9 7 35 35 H 1.09007 * 109.47187 * 209.99761 * 10 9 7 36 36 H 1.09001 * 109.47718 * 330.00054 * 10 9 7 37 37 H 1.09006 * 109.47166 * 209.99606 * 11 9 7 38 38 H 1.09002 * 109.47194 * 329.99793 * 11 9 7 39 39 H 0.97001 * 119.99794 * 180.02562 * 15 14 12 40 40 H 1.09001 * 115.54845 * 273.18098 * 20 5 4 41 41 H 1.09000 * 117.49934 * 0.02562 * 21 20 5 42 42 H 1.09003 * 117.49733 * 145.02136 * 21 20 5 43 43 H 1.09001 * 117.49724 * 214.98301 * 22 20 5 44 44 H 1.08997 * 117.50055 * 359.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5020 -0.8465 -1.1797 6 6 4.0666 -1.1632 -2.4983 7 6 5.5450 -0.8709 -2.4953 8 8 6.0769 -0.4453 -1.4918 9 7 6.2761 -1.0824 -3.6076 10 6 5.6336 -1.5969 -4.8195 11 6 7.7131 -0.7977 -3.6047 12 6 8.4685 -2.0300 -3.1783 13 1 7.9318 -2.9347 -2.9335 14 6 9.8448 -2.0026 -3.1007 15 7 10.5040 -3.0779 -2.7281 16 14 10.7732 -0.4382 -3.5248 17 1 10.9357 0.3881 -2.3016 18 1 12.1106 -0.7878 -4.0671 19 1 10.0113 0.3290 -4.5427 20 6 3.8976 -1.8504 -0.1828 21 6 4.8538 -2.9561 -0.6346 22 6 3.3801 -3.2775 -0.3737 23 1 -0.3633 -1.0240 0.0874 24 1 -0.3633 0.5875 0.8431 25 1 -0.3633 0.4363 -0.9304 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.5926 -1.7136 -1.3040 31 1 1.7662 -0.1496 -2.1360 32 1 3.9054 -2.2185 -2.7187 33 1 3.5775 -0.5544 -3.2588 34 1 5.2844 -0.7625 -5.4278 35 1 6.3521 -2.1863 -5.3894 36 1 4.7865 -2.2247 -4.5432 37 1 8.0280 -0.5073 -4.6070 38 1 7.9211 0.0150 -2.9087 39 1 11.4722 -3.0585 -2.6731 40 1 3.9985 -1.4841 0.8388 41 1 5.1896 -2.9384 -1.6714 42 1 5.5836 -3.3174 0.0899 43 1 3.1410 -3.8502 0.5224 44 1 2.7458 -3.4714 -1.2386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042249954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:20 Heat of formation + Delta-G solvation = 3.835559 kcal Electronic energy + Delta-G solvation = -21735.453640 eV Core-core repulsion = 18689.323466 eV Total energy + Delta-G solvation = -3046.130174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95699 -37.98949 -35.70730 -34.74143 -32.78517 -32.38109 -29.15124 -27.35736 -27.08516 -25.75445 -24.70185 -22.41368 -22.05597 -20.84724 -19.20259 -18.19842 -17.11463 -16.73014 -16.41407 -15.61699 -15.12016 -14.65845 -14.50574 -14.15434 -13.82604 -13.60654 -12.99785 -12.83359 -12.62789 -12.40469 -12.30189 -12.10677 -11.97784 -11.77497 -11.56548 -11.39588 -11.23606 -11.03203 -10.90220 -10.84169 -10.57436 -10.48243 -10.34717 -10.11760 -9.87926 -9.51050 -8.92065 -8.56131 -8.04889 -7.62076 -6.06356 -4.04546 3.31370 3.37277 3.39603 3.45650 3.58602 4.02632 4.21671 4.42287 4.72854 4.92693 5.02721 5.06544 5.10278 5.17054 5.20392 5.28860 5.37210 5.44528 5.49443 5.57999 5.61572 5.64727 5.74603 5.76862 5.86688 5.86876 5.97078 6.08931 6.15820 6.18352 6.31630 6.33631 6.39822 6.51703 6.71682 6.96181 7.09026 7.19479 7.41997 7.64714 8.33006 8.50435 8.96241 9.12008 9.54701 11.07054 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027617 B = 0.004752 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.641723 B = 5890.535411 C = 6089.799985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.140 4.140 4 C 0.061 3.939 5 N -0.486 5.486 6 C 0.031 3.969 7 C 0.509 3.491 8 O -0.513 6.513 9 N -0.604 5.604 10 C 0.084 3.916 11 C 0.218 3.782 12 C -0.526 4.526 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.041 3.959 21 C -0.168 4.168 22 C -0.225 4.225 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.443 3.734 0.518 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.066 4.066 5 N -0.208 5.208 6 C -0.100 4.100 7 C 0.294 3.706 8 O -0.388 6.388 9 N -0.338 5.338 10 C -0.060 4.060 11 C 0.097 3.903 12 C -0.564 4.564 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.703 3.297 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.068 4.068 21 C -0.205 4.205 22 C -0.264 4.264 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.764 4.380 1.224 19.307 hybrid contribution 0.337 -0.274 -0.620 0.757 sum -18.428 4.106 0.603 18.889 Atomic orbital electron populations 1.21824 0.95533 1.01369 1.01656 1.21023 0.94458 0.97127 0.98098 1.21744 1.02854 0.94772 1.00368 1.22248 0.86715 0.99039 0.98607 1.61599 1.09008 1.45212 1.05001 1.22159 0.95088 1.00673 0.92119 1.20059 0.87799 0.79199 0.83514 1.90676 1.72274 1.44100 1.31738 1.47842 1.10332 1.64691 1.10982 1.21637 0.98075 0.98228 0.88100 1.19620 0.75940 0.97757 0.96991 1.21326 0.91544 0.97707 1.45852 0.90855 1.24853 0.97451 0.96115 0.94604 1.69902 1.07834 1.28235 1.47766 0.86851 0.79430 0.84034 0.79371 1.19912 1.21154 1.19097 1.22624 1.02839 0.84085 0.97232 1.23292 0.92101 1.01513 1.03640 1.23453 0.98176 1.01491 1.03261 0.93009 0.92633 0.92862 0.91053 0.93450 0.93699 0.90949 0.94430 0.91116 0.92000 0.88896 0.93752 0.90598 0.92590 0.95429 0.94585 0.92633 0.86071 0.88232 0.88208 0.88809 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.91 2.95 -90.62 -0.27 -1.18 16 3 C -0.14 -1.55 9.09 37.16 0.34 -1.22 16 4 C 0.06 0.69 4.30 -3.83 -0.02 0.67 16 5 N -0.49 -7.09 3.79 -228.09 -0.86 -7.95 16 6 C 0.03 0.46 3.55 -4.98 -0.02 0.45 16 7 C 0.51 10.35 5.68 -10.99 -0.06 10.29 16 8 O -0.51 -12.63 14.83 5.55 0.08 -12.55 16 9 N -0.60 -12.45 2.86 -182.95 -0.52 -12.98 16 10 C 0.08 1.28 10.24 59.85 0.61 1.89 16 11 C 0.22 5.36 4.23 -5.20 -0.02 5.34 16 12 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 13 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 15 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 16 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 17 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 20 C 0.04 0.62 4.81 -67.71 -0.33 0.29 16 21 C -0.17 -2.84 8.49 -26.69 -0.23 -3.06 16 22 C -0.22 -2.92 9.18 -26.69 -0.24 -3.16 16 23 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.79 7.37 -51.93 -0.38 0.41 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.99 7.78 -51.93 -0.40 0.59 16 30 H 0.04 0.40 6.69 -51.93 -0.35 0.05 16 31 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.06 0.88 5.29 -51.93 -0.27 0.60 16 33 H 0.09 1.18 7.65 -51.93 -0.40 0.78 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.71 6.45 -51.93 -0.33 0.38 16 37 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 38 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.12 1.82 8.01 -51.93 -0.42 1.40 16 41 H 0.10 1.89 4.91 -51.93 -0.25 1.63 16 42 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.05 7.17 -51.93 -0.37 0.68 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -33.13 343.33 -8.06 -41.18 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.70 Total: 1.03 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -0.33 Total: -4.00 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.61 Total: -47.95 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.13 -8.06 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042249954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.020 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds