Wall clock time and date at job start Mon Mar 30 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47330 * 2 1 4 4 C 1.53000 * 109.47592 * 180.02562 * 3 2 1 5 5 N 1.46890 * 109.47441 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00191 * 189.99804 * 5 4 3 7 7 C 1.50697 * 109.47301 * 162.37158 * 6 5 4 8 8 O 1.21279 * 120.00175 * 1.58982 * 7 6 5 9 9 N 1.34776 * 120.00369 * 181.59639 * 7 6 5 10 10 C 1.46509 * 119.99669 * 359.97438 * 9 7 6 11 11 C 1.46498 * 120.00545 * 180.02562 * 9 7 6 12 12 C 1.50698 * 109.47369 * 89.99598 * 11 9 7 13 13 H 1.07998 * 119.99851 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99955 * 180.02562 * 12 11 9 15 15 N 1.31508 * 120.00124 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99726 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47172 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47016 * 120.00074 * 16 14 12 19 19 H 1.48505 * 109.47346 * 240.00157 * 16 14 12 20 20 C 1.46899 * 111.00383 * 66.04189 * 5 4 3 21 21 C 1.52999 * 117.49948 * 127.57593 * 20 5 4 22 22 C 1.53000 * 117.49562 * 58.91963 * 20 5 4 23 23 H 1.09009 * 109.46768 * 299.99635 * 1 2 3 24 24 H 1.08997 * 109.47390 * 59.99629 * 1 2 3 25 25 H 1.08995 * 109.47240 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46768 * 240.00364 * 2 1 3 27 27 H 1.09000 * 109.47588 * 120.00855 * 2 1 3 28 28 H 1.09003 * 109.47075 * 60.00047 * 3 2 1 29 29 H 1.08997 * 109.47187 * 300.00495 * 3 2 1 30 30 H 1.09010 * 109.47062 * 300.00555 * 4 3 2 31 31 H 1.09003 * 109.47211 * 59.99715 * 4 3 2 32 32 H 1.08993 * 109.47478 * 282.37603 * 6 5 4 33 33 H 1.09000 * 109.47247 * 42.37370 * 6 5 4 34 34 H 1.09000 * 109.46585 * 90.00731 * 10 9 7 35 35 H 1.09000 * 109.47122 * 210.00335 * 10 9 7 36 36 H 1.08994 * 109.47264 * 330.00262 * 10 9 7 37 37 H 1.09003 * 109.47006 * 210.00045 * 11 9 7 38 38 H 1.09003 * 109.46840 * 329.99313 * 11 9 7 39 39 H 0.97006 * 119.99959 * 179.97438 * 15 14 12 40 40 H 1.09000 * 115.55484 * 273.25021 * 20 5 4 41 41 H 1.09009 * 117.50046 * 0.02562 * 21 20 5 42 42 H 1.08998 * 117.50194 * 145.02296 * 21 20 5 43 43 H 1.09003 * 117.50013 * 214.98427 * 22 20 5 44 44 H 1.09006 * 117.49846 * 359.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8274 0.0000 6 6 5.5084 2.8737 -0.2387 7 6 5.9040 4.2658 -0.6589 8 8 5.0668 5.1410 -0.7227 9 7 7.1882 4.5383 -0.9640 10 6 8.1996 3.4812 -0.8866 11 6 7.5730 5.8917 -1.3720 12 6 7.9556 6.6936 -0.1549 13 1 7.9165 6.2404 0.8246 14 6 8.3555 8.0060 -0.2918 15 7 8.4027 8.5580 -1.4844 16 14 8.8291 9.0002 1.2171 17 1 8.6911 8.1550 2.4302 18 1 10.2371 9.4547 1.0885 19 1 7.9362 10.1813 1.3320 20 6 3.7106 3.5087 1.2538 21 6 4.8407 4.1969 2.0221 22 6 4.2304 2.8992 2.5573 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9285 0.8891 31 1 3.9330 0.9288 -0.8908 32 1 6.0362 2.6068 0.6768 33 1 5.7694 2.1682 -1.0275 34 1 8.2694 2.9739 -1.8489 35 1 9.1655 3.9201 -0.6364 36 1 7.9166 2.7632 -0.1170 37 1 8.4220 5.8381 -2.0536 38 1 6.7335 6.3721 -1.8746 39 1 8.6837 9.4815 -1.5807 40 1 2.7279 3.9797 1.2752 41 1 5.8431 4.1445 1.5970 42 1 4.6014 5.1204 2.5492 43 1 3.5897 2.9694 3.4364 44 1 4.8309 1.9924 2.4845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042270346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:23 Heat of formation + Delta-G solvation = -3.868274 kcal Electronic energy + Delta-G solvation = -21363.869262 eV Core-core repulsion = 18317.405025 eV Total energy + Delta-G solvation = -3046.464237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86846 -37.83663 -35.45551 -34.62127 -33.09388 -32.53213 -29.66513 -27.89122 -26.35094 -25.34663 -23.52708 -22.67203 -21.99744 -21.26991 -19.60490 -18.15140 -17.07515 -16.42134 -16.23389 -15.57737 -15.39087 -14.81233 -14.37041 -14.11399 -13.84840 -13.81828 -13.30477 -12.80694 -12.63746 -12.44126 -12.17121 -12.06921 -11.82418 -11.57973 -11.46781 -11.18899 -11.14425 -11.05738 -11.03410 -10.82585 -10.64108 -10.54501 -10.40185 -10.13089 -9.89934 -9.56402 -8.82419 -8.41007 -8.03088 -7.54972 -6.01244 -4.05695 3.30831 3.38271 3.41651 3.54264 3.65109 4.01554 4.27815 4.47752 4.73080 4.85786 5.00514 5.02149 5.07179 5.12931 5.21366 5.27618 5.33838 5.39491 5.47907 5.56165 5.57564 5.67445 5.70621 5.71907 5.75642 5.81945 5.95615 5.99272 6.16032 6.18792 6.21861 6.27557 6.29179 6.38173 6.96952 7.18559 7.21802 7.50916 7.62163 7.96073 8.27692 8.50986 8.95338 9.23720 9.59569 11.06780 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.004230 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.665145 B = 6617.063922 C = 6949.386957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.114 4.114 4 C 0.058 3.942 5 N -0.489 5.489 6 C 0.030 3.970 7 C 0.506 3.494 8 O -0.515 6.515 9 N -0.609 5.609 10 C 0.084 3.916 11 C 0.247 3.753 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.043 3.957 21 C -0.170 4.170 22 C -0.225 4.225 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.478 -17.828 4.405 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.211 5.211 6 C -0.101 4.101 7 C 0.291 3.709 8 O -0.389 6.389 9 N -0.343 5.343 10 C -0.060 4.060 11 C 0.128 3.872 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.066 4.066 21 C -0.207 4.207 22 C -0.264 4.264 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.108 -16.922 3.854 19.600 hybrid contribution 0.951 0.179 1.497 1.783 sum -8.157 -16.743 5.351 19.378 Atomic orbital electron populations 1.21754 0.95887 1.01290 1.01945 1.21488 0.95870 0.96988 1.01724 1.21548 0.94346 0.96221 1.03035 1.22171 0.95986 0.88303 1.00468 1.61633 1.12245 1.14921 1.32331 1.22171 0.89290 0.97522 1.01159 1.20024 0.82711 0.89322 0.78798 1.90673 1.49570 1.47465 1.51235 1.48166 1.06476 1.12551 1.67140 1.21608 0.93822 0.90843 0.99751 1.19247 0.96270 0.76087 0.95604 1.21462 1.44437 0.96662 0.93573 0.92535 1.24933 0.95670 0.97507 0.96042 1.69944 1.47894 1.13748 1.21827 0.86473 0.77918 0.80174 0.83026 1.19845 1.21026 1.20885 1.22600 0.99134 1.00752 0.84068 1.23283 0.98756 0.95942 1.02749 1.23458 1.05804 0.97619 0.99559 0.92805 0.92638 0.93023 0.92114 0.92325 0.91778 0.91043 0.94773 0.90996 0.92139 0.88963 0.93847 0.90807 0.92941 0.95182 0.93852 0.92821 0.86049 0.88243 0.88332 0.88833 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.15 0.37 -0.80 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.11 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C 0.06 0.67 4.85 -3.83 -0.02 0.65 16 5 N -0.49 -7.41 4.34 -228.09 -0.99 -8.40 16 6 C 0.03 0.47 3.53 -4.98 -0.02 0.45 16 7 C 0.51 10.67 5.74 -10.99 -0.06 10.61 16 8 O -0.51 -13.14 14.78 5.56 0.08 -13.05 16 9 N -0.61 -13.06 2.86 -182.95 -0.52 -13.59 16 10 C 0.08 1.34 10.22 59.85 0.61 1.95 16 11 C 0.25 6.55 5.16 -5.20 -0.03 6.53 16 12 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 C 0.04 0.66 4.55 -67.71 -0.31 0.35 16 21 C -0.17 -2.81 8.47 -26.70 -0.23 -3.03 16 22 C -0.23 -2.89 9.27 -26.70 -0.25 -3.13 16 23 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.37 6.86 -51.92 -0.36 0.01 16 31 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 32 H 0.06 0.87 5.34 -51.93 -0.28 0.60 16 33 H 0.09 1.23 7.70 -51.93 -0.40 0.83 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.05 0.68 6.49 -51.93 -0.34 0.35 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.83 8.03 -51.93 -0.42 1.41 16 41 H 0.10 1.85 4.92 -51.92 -0.26 1.59 16 42 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.09 1.04 7.14 -51.93 -0.37 0.67 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -32.77 348.40 -8.89 -41.66 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.77 Total: -0.22 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.65 Total: -2.50 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.78 Total: -48.14 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.77 -8.89 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042270346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.787 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds