Wall clock time and date at job start Mon Mar 30 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47556 * 2 1 4 4 C 1.53005 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47063 * 54.99372 * 4 3 2 6 6 C 1.52997 * 109.46907 * 174.99864 * 4 3 2 7 7 N 1.46494 * 109.46782 * 294.99755 * 4 3 2 8 8 C 1.34782 * 120.00011 * 155.00269 * 7 4 3 9 9 O 1.21272 * 119.99791 * 359.97438 * 8 7 4 10 10 C 1.50700 * 119.99877 * 180.02562 * 8 7 4 11 11 N 1.46900 * 109.46765 * 180.02562 * 10 8 7 12 12 C 1.46905 * 110.99916 * 170.00054 * 11 10 8 13 13 C 1.50703 * 109.47036 * 285.58496 * 12 11 10 14 14 H 1.08004 * 119.99868 * 4.86016 * 13 12 11 15 15 C 1.37876 * 120.00025 * 184.85269 * 13 12 11 16 16 N 1.31511 * 119.99817 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99877 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.46761 * 90.00139 * 17 15 13 19 19 H 1.48500 * 109.47115 * 210.00347 * 17 15 13 20 20 H 1.48499 * 109.46957 * 330.00482 * 17 15 13 21 21 C 1.46901 * 110.99713 * 293.95029 * 11 10 8 22 22 C 1.53008 * 117.49726 * 246.02950 * 21 11 10 23 23 C 1.52998 * 59.99883 * 252.51374 * 22 21 11 24 24 H 1.09001 * 109.46760 * 300.00202 * 1 2 3 25 25 H 1.08998 * 109.46998 * 60.00133 * 1 2 3 26 26 H 1.08998 * 109.47369 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47022 * 119.99879 * 2 1 3 28 28 H 1.08998 * 109.47025 * 239.99345 * 2 1 3 29 29 H 1.09008 * 109.46856 * 299.99981 * 3 2 1 30 30 H 1.08998 * 109.47489 * 59.99629 * 3 2 1 31 31 H 1.08994 * 109.47661 * 59.99874 * 6 4 3 32 32 H 1.09003 * 109.47180 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47475 * 299.99663 * 6 4 3 34 34 H 0.97004 * 120.00196 * 334.99726 * 7 4 3 35 35 H 1.09002 * 109.46833 * 299.99587 * 10 8 7 36 36 H 1.08998 * 109.47252 * 59.99852 * 10 8 7 37 37 H 1.08998 * 109.47190 * 45.58353 * 12 11 10 38 38 H 1.08999 * 109.46774 * 165.58584 * 12 11 10 39 39 H 0.97006 * 119.99547 * 179.97438 * 16 15 13 40 40 H 1.08995 * 115.55419 * 31.74188 * 21 11 10 41 41 H 1.08997 * 117.49811 * 0.02562 * 22 21 11 42 42 H 1.09002 * 117.49471 * 145.02044 * 22 21 11 43 43 H 1.09000 * 117.50071 * 252.50877 * 23 22 21 44 44 H 1.09000 * 117.52017 * 107.48273 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9331 0.8530 -0.8426 6 6 4.0801 2.8793 -0.1264 7 7 4.0589 0.8585 1.2509 8 6 5.2809 0.2919 1.2981 9 8 5.9756 0.2650 0.3045 10 6 5.7834 -0.3093 2.5855 11 7 7.1303 -0.8574 2.3769 12 6 7.7477 -1.2373 3.6546 13 6 8.1751 0.0039 4.3947 14 1 7.9353 0.9791 3.9973 15 6 8.8720 -0.1054 5.5793 16 7 9.1642 -1.2929 6.0631 17 14 9.4011 1.4332 6.4971 18 1 8.3343 1.8328 7.4497 19 1 10.6543 1.1574 7.2445 20 1 9.6353 2.5326 5.5266 21 6 7.0974 -1.9958 1.4490 22 6 7.4610 -3.3731 2.0075 23 6 8.4330 -2.6435 1.0781 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9563 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 3.7172 3.4687 0.7155 32 1 5.1701 2.8794 -0.1264 33 1 3.7165 3.3138 -1.0576 34 1 3.5031 0.8797 2.0456 35 1 5.8202 0.4608 3.3560 36 1 5.1109 -1.1070 2.9008 37 1 7.0261 -1.7891 4.2570 38 1 8.6183 -1.8651 3.4649 39 1 9.6549 -1.3697 6.8964 40 1 6.3281 -1.9520 0.6781 41 1 7.7240 -3.4346 3.0634 42 1 6.9305 -4.2357 1.6041 43 1 8.5422 -3.0262 0.0634 44 1 9.3360 -2.2247 1.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042359684.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:07 Heat of formation + Delta-G solvation = -40.067479 kcal Electronic energy + Delta-G solvation = -21123.722664 eV Core-core repulsion = 18075.688711 eV Total energy + Delta-G solvation = -3048.033952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01011 -39.34370 -37.50101 -35.36893 -34.37496 -34.08623 -31.87975 -29.59471 -27.59667 -27.12521 -24.55559 -23.16943 -22.93287 -21.99914 -21.46648 -20.59628 -18.75467 -18.05546 -17.37934 -16.81899 -16.58163 -16.38811 -15.69040 -15.46581 -15.07976 -14.77134 -14.47087 -14.21960 -14.07587 -13.79692 -13.57325 -13.31947 -13.12928 -12.95004 -12.87544 -12.69669 -12.54945 -12.36461 -12.33456 -11.97540 -11.83562 -11.69334 -11.59846 -11.48377 -11.22356 -11.13332 -10.67158 -10.52665 -9.97528 -8.81297 -8.19082 -6.29496 1.40712 1.43028 1.54307 1.75306 2.20486 2.41179 2.95640 3.12661 3.33301 3.72955 3.95293 4.06250 4.09627 4.13162 4.15516 4.21576 4.41645 4.47753 4.54089 4.54972 4.65645 4.76461 4.78735 4.80345 4.85199 4.93275 5.03613 5.05266 5.10734 5.17961 5.28820 5.29980 5.30629 5.33051 5.35549 5.50368 5.64956 5.68383 6.06228 6.28647 6.56937 6.70929 6.85306 7.39421 7.40801 8.90821 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.004723 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.888036 B = 5926.483079 C = 6716.277030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.115 4.115 4 C 0.141 3.859 5 H 0.064 0.936 6 C -0.160 4.160 7 N -0.715 5.715 8 C 0.520 3.480 9 O -0.561 6.561 10 C 0.046 3.954 11 N -0.506 5.506 12 C 0.211 3.789 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.028 3.972 22 C -0.218 4.218 23 C -0.171 4.171 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.068 0.932 37 H -0.026 1.026 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 3.725 -10.399 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.153 4.153 4 C 0.037 3.963 5 H 0.083 0.917 6 C -0.218 4.218 7 N -0.369 5.369 8 C 0.307 3.693 9 O -0.439 6.439 10 C -0.085 4.085 11 N -0.228 5.228 12 C 0.085 3.915 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.081 4.081 22 C -0.257 4.257 23 C -0.209 4.209 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.121 0.879 36 H 0.086 0.914 37 H -0.009 1.009 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.676 4.019 -11.179 20.474 hybrid contribution 0.177 -0.190 1.439 1.462 sum -16.499 3.829 -9.740 19.538 Atomic orbital electron populations 1.21748 0.94732 1.01830 1.02339 1.21530 0.96613 0.96577 1.01701 1.21867 0.91385 0.97617 1.04388 1.21026 0.95075 0.93868 0.86337 0.91732 1.22144 1.00262 0.96204 1.03214 1.45995 1.16858 1.59545 1.14512 1.20677 0.81384 0.77484 0.89799 1.90641 1.56847 1.58826 1.37537 1.21882 0.90647 1.00532 0.95471 1.61543 1.18219 1.29792 1.13278 1.19482 0.92806 0.95248 0.83948 1.21451 1.35763 0.93370 1.05864 0.92453 1.25819 0.95759 0.99293 0.98225 1.70070 1.41051 1.24481 1.21440 0.85440 0.77906 0.79225 0.78397 1.19258 1.20841 1.19542 1.22622 0.99513 0.87421 0.98575 1.23551 1.05445 0.97342 0.99336 1.22953 0.93898 1.03706 1.00366 0.92111 0.92123 0.92906 0.92545 0.92962 0.89015 0.89931 0.91401 0.95191 0.89970 0.75261 0.87950 0.91375 1.00855 0.96513 0.92647 0.86535 0.90438 0.86909 0.86695 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.85 5.82 30.59 0.18 -1.67 16 3 C -0.11 -1.55 4.75 30.59 0.15 -1.40 16 4 C 0.14 2.92 2.57 44.99 0.12 3.04 16 5 H 0.06 1.64 7.58 -2.39 -0.02 1.62 16 6 C -0.16 -3.30 9.48 71.98 0.68 -2.62 16 7 N -0.72 -17.04 4.53 -442.55 -2.00 -19.05 16 8 C 0.52 17.66 7.32 87.66 0.64 18.30 16 9 O -0.56 -23.28 14.44 -3.01 -0.04 -23.32 16 10 C 0.05 1.72 5.28 85.56 0.45 2.17 16 11 N -0.51 -23.21 4.39 -880.04 -3.86 -27.07 16 12 C 0.21 11.23 3.38 85.56 0.29 11.52 16 13 C -0.53 -29.96 8.58 25.60 0.22 -29.74 16 14 H 0.06 3.25 7.57 -2.91 -0.02 3.23 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 17 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C 0.03 1.15 5.27 44.92 0.24 1.38 16 22 C -0.22 -8.20 9.55 30.60 0.29 -7.91 16 23 C -0.17 -6.63 9.92 30.59 0.30 -6.33 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.92 7.75 -2.38 -0.02 0.90 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.41 7.51 8.60 -92.70 -0.80 6.71 16 35 H 0.10 3.97 7.21 -2.39 -0.02 3.95 16 36 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 37 H -0.03 -1.46 7.84 -2.39 -0.02 -1.48 16 38 H 0.02 0.98 5.63 -2.39 -0.01 0.97 16 39 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 40 H 0.12 4.49 6.61 -2.39 -0.02 4.48 16 41 H 0.08 3.40 6.01 -2.39 -0.01 3.39 16 42 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 44 H 0.07 3.10 7.50 -2.39 -0.02 3.08 16 Total: -1.00 -69.28 353.12 1.30 -67.98 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.16 Total: 23.74 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.73 Total: -13.40 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -5.58 Total: -101.30 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.04 Total: -23.32 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.28 1.30 -67.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359684.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.913 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds