Wall clock time and date at job start Mon Mar 30 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46793 * 2 1 4 4 C 1.53004 * 109.46793 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46896 * 304.99482 * 4 3 2 6 6 C 1.53004 * 109.46961 * 184.99906 * 4 3 2 7 7 N 1.46503 * 109.47420 * 64.99671 * 4 3 2 8 8 C 1.34775 * 119.99917 * 204.99846 * 7 4 3 9 9 O 1.21282 * 120.00286 * 0.02562 * 8 7 4 10 10 C 1.50704 * 119.99520 * 179.97438 * 8 7 4 11 11 N 1.46906 * 109.46498 * 180.02562 * 10 8 7 12 12 C 1.46901 * 110.99300 * 170.00179 * 11 10 8 13 13 C 1.50705 * 109.47198 * 285.54860 * 12 11 10 14 14 H 1.07996 * 119.99622 * 4.86715 * 13 12 11 15 15 C 1.37874 * 120.00071 * 184.86185 * 13 12 11 16 16 N 1.31520 * 119.99909 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99874 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47245 * 59.99822 * 17 15 13 19 19 H 1.48502 * 109.46838 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47046 * 299.99688 * 17 15 13 21 21 C 1.46901 * 110.99909 * 293.95126 * 11 10 8 22 22 C 1.53001 * 117.49896 * 246.09202 * 21 11 10 23 23 C 1.53002 * 117.49433 * 177.43569 * 21 11 10 24 24 H 1.09004 * 109.47102 * 60.00685 * 1 2 3 25 25 H 1.08999 * 109.46789 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47488 * 300.00242 * 1 2 3 27 27 H 1.09000 * 109.46637 * 119.99895 * 2 1 3 28 28 H 1.08996 * 109.47488 * 239.99758 * 2 1 3 29 29 H 1.09000 * 109.46998 * 299.99105 * 3 2 1 30 30 H 1.08993 * 109.47540 * 60.00116 * 3 2 1 31 31 H 1.08997 * 109.46969 * 299.99531 * 6 4 3 32 32 H 1.08998 * 109.47410 * 59.99956 * 6 4 3 33 33 H 1.09001 * 109.46793 * 180.02562 * 6 4 3 34 34 H 0.97000 * 119.99596 * 25.00329 * 7 4 3 35 35 H 1.08998 * 109.47121 * 300.00051 * 10 8 7 36 36 H 1.08995 * 109.47134 * 60.00641 * 10 8 7 37 37 H 1.08999 * 109.47497 * 45.55525 * 12 11 10 38 38 H 1.09007 * 109.46596 * 165.55304 * 12 11 10 39 39 H 0.97002 * 119.99883 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.55102 * 31.76838 * 21 11 10 41 41 H 1.09000 * 117.49683 * 0.02562 * 22 21 11 42 42 H 1.09001 * 117.49586 * 145.02320 * 22 21 11 43 43 H 1.09000 * 117.49312 * 214.98245 * 23 21 11 44 44 H 1.08995 * 117.50397 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0799 2.8796 0.1263 7 7 4.0589 0.8585 -1.2508 8 6 5.2809 0.2920 -1.2979 9 8 5.9757 0.2653 -0.3041 10 6 5.7836 -0.3092 -2.5852 11 7 7.1300 -0.8583 -2.3761 12 6 7.5577 -1.6578 -3.5319 13 6 6.8278 -2.9763 -3.5284 14 1 6.0609 -3.1670 -2.7923 15 6 7.1390 -3.9390 -4.4650 16 7 8.0732 -3.7069 -5.3612 17 14 6.2339 -5.5730 -4.4611 18 1 4.7817 -5.3349 -4.6602 19 1 6.7511 -6.4280 -5.5596 20 1 6.4498 -6.2554 -3.1599 21 6 8.0958 0.2108 -2.0891 22 6 9.1961 0.4647 -3.1215 23 6 9.5376 -0.2023 -1.7867 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.7170 3.4688 -0.7157 32 1 3.7162 3.3141 1.0575 33 1 5.1699 2.8796 0.1263 34 1 3.5032 0.8797 -2.0455 35 1 5.1111 -1.1070 -2.9005 36 1 5.8205 0.4608 -3.3557 37 1 7.3294 -1.1185 -4.4512 38 1 8.6313 -1.8366 -3.4726 39 1 8.2919 -4.3841 -6.0204 40 1 7.6971 1.0738 -1.5558 41 1 9.2031 -0.1613 -4.0138 42 1 9.5216 1.4947 -3.2671 43 1 10.0876 0.3892 -1.0548 44 1 9.7695 -1.2672 -1.8003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042359689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:10 Heat of formation + Delta-G solvation = -19.690779 kcal Electronic energy + Delta-G solvation = -21138.068897 eV Core-core repulsion = 18090.918544 eV Total energy + Delta-G solvation = -3047.150352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.65227 -37.82665 -36.39707 -33.49713 -33.40687 -32.21743 -30.80292 -27.73387 -26.84125 -25.43560 -22.63876 -22.03573 -21.58144 -21.07922 -20.25903 -18.91529 -16.82667 -16.63649 -16.17956 -15.24749 -15.03581 -14.66860 -14.60374 -14.20974 -13.83455 -13.64839 -13.23739 -12.81972 -12.68807 -12.33969 -12.26116 -12.25385 -12.08066 -11.59012 -11.28244 -11.21764 -11.03094 -10.86910 -10.84769 -10.72773 -10.71283 -10.63247 -10.11984 -9.86770 -9.65899 -9.19628 -9.07817 -8.83000 -8.42268 -7.07362 -6.03543 -4.05269 3.12986 3.32733 3.37415 3.39672 3.41753 4.40523 4.53003 4.55670 4.83209 4.83723 4.93817 5.19684 5.24703 5.31789 5.34161 5.39523 5.44871 5.62139 5.64316 5.66762 5.71470 5.72217 5.78838 5.89694 5.96331 6.04112 6.10141 6.12226 6.15551 6.22995 6.28140 6.34809 6.68440 6.74669 6.88432 7.23961 7.27326 7.75331 7.80079 8.09499 8.18341 8.51643 8.69594 9.01691 9.58905 11.06725 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.005433 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.784699 B = 5152.418206 C = 6793.887216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.125 4.125 4 C 0.141 3.859 5 H 0.086 0.914 6 C -0.162 4.162 7 N -0.735 5.735 8 C 0.514 3.486 9 O -0.522 6.522 10 C 0.047 3.953 11 N -0.487 5.487 12 C 0.189 3.811 13 C -0.509 4.509 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.038 3.962 22 C -0.232 4.232 23 C -0.171 4.171 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.110 0.890 36 H 0.051 0.949 37 H -0.007 1.007 38 H 0.044 0.956 39 H 0.262 0.738 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 12.067 7.252 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.163 4.163 4 C 0.037 3.963 5 H 0.104 0.896 6 C -0.221 4.221 7 N -0.390 5.390 8 C 0.301 3.699 9 O -0.396 6.396 10 C -0.085 4.085 11 N -0.209 5.209 12 C 0.065 3.935 13 C -0.548 4.548 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.072 4.072 22 C -0.272 4.272 23 C -0.209 4.209 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.011 0.989 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.760 11.616 8.240 17.850 hybrid contribution -0.619 -0.381 -1.184 1.389 sum -11.378 11.235 7.057 17.479 Atomic orbital electron populations 1.21772 0.95969 1.01658 1.01492 1.21546 0.95552 0.96519 1.02857 1.21912 0.94152 0.97531 1.02688 1.20889 0.93083 0.94143 0.88223 0.89608 1.22173 1.02203 0.96214 1.01473 1.46159 1.18502 1.61208 1.13120 1.21059 0.80702 0.76820 0.91359 1.90659 1.55908 1.56496 1.36568 1.21874 0.94657 0.99478 0.92460 1.61684 0.98333 1.18582 1.42304 1.19907 0.97531 0.91493 0.84554 1.21129 1.20418 0.99116 1.14105 0.92022 1.24961 0.95343 0.98635 0.95476 1.69942 1.31061 1.34908 1.17804 0.86567 0.79810 0.83457 0.77611 1.20313 1.21355 1.20153 1.22553 0.88195 0.95854 1.00594 1.23652 1.07356 1.00917 0.95225 1.22920 0.98628 1.01427 0.97906 0.92839 0.92752 0.92976 0.91881 0.91454 0.91538 0.90783 0.92723 0.92079 0.92056 0.76978 0.87162 0.93113 0.98917 0.93765 0.92835 0.87621 0.87571 0.90271 0.89753 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.18 5.82 -26.73 -0.16 -1.33 16 3 C -0.12 -1.05 4.75 -26.73 -0.13 -1.18 16 4 C 0.14 1.57 2.57 -67.92 -0.17 1.40 16 5 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 6 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 7 N -0.74 -9.21 4.53 -53.80 -0.24 -9.46 16 8 C 0.51 8.78 7.32 -10.98 -0.08 8.70 16 9 O -0.52 -10.75 14.45 5.56 0.08 -10.67 16 10 C 0.05 0.87 5.28 -4.97 -0.03 0.85 16 11 N -0.49 -10.91 4.39 -229.51 -1.01 -11.91 16 12 C 0.19 4.87 3.38 -4.97 -0.02 4.85 16 13 C -0.51 -14.15 8.58 -34.44 -0.30 -14.45 16 14 H 0.06 1.71 7.58 -52.49 -0.40 1.31 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.26 13.29 55.43 0.74 -25.53 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.04 0.77 5.27 -67.71 -0.36 0.41 16 22 C -0.23 -4.39 9.56 -26.69 -0.26 -4.64 16 23 C -0.17 -3.30 9.92 -26.69 -0.26 -3.56 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 35 H 0.11 2.11 7.21 -51.93 -0.37 1.73 16 36 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 37 H -0.01 -0.18 7.84 -51.93 -0.41 -0.59 16 38 H 0.04 1.22 5.63 -51.92 -0.29 0.93 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 2.07 6.61 -51.93 -0.34 1.73 16 41 H 0.11 2.25 6.01 -51.93 -0.31 1.94 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.10 2.06 7.50 -51.93 -0.39 1.67 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -31.35 353.13 -9.13 -40.48 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.87 Total: 4.87 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.13 Total: -9.59 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.51 Total: -46.90 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.35 -9.13 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042359689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.794 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds