Wall clock time and date at job start Mon Mar 30 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47460 * 2 1 4 4 H 1.09003 * 109.46747 * 54.99527 * 3 2 1 5 5 C 1.52991 * 109.47151 * 174.99992 * 3 2 1 6 6 N 1.46499 * 109.46770 * 294.99890 * 3 2 1 7 7 C 1.34774 * 119.99721 * 154.99835 * 6 3 2 8 8 O 1.21288 * 120.00318 * 359.97438 * 7 6 3 9 9 C 1.50706 * 120.00146 * 179.97438 * 7 6 3 10 10 H 1.08998 * 109.46471 * 299.99866 * 9 7 6 11 11 C 1.53000 * 109.47053 * 59.99903 * 9 7 6 12 12 N 1.46903 * 109.47090 * 179.97438 * 9 7 6 13 13 C 1.46902 * 110.99529 * 179.97438 * 12 9 7 14 14 C 1.50702 * 109.46789 * 162.64155 * 13 12 9 15 15 H 1.07998 * 119.99907 * 4.29299 * 14 13 12 16 16 C 1.37870 * 120.00005 * 184.29627 * 14 13 12 17 17 N 1.31516 * 119.99981 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00331 * 179.72036 * 16 14 13 19 19 H 1.48504 * 109.46647 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47279 * 119.99983 * 18 16 14 21 21 H 1.48498 * 109.47428 * 240.00183 * 18 16 14 22 22 C 1.46894 * 111.00001 * 56.04708 * 12 9 7 23 23 C 1.53002 * 117.50071 * 128.10269 * 22 12 9 24 24 C 1.52999 * 117.50203 * 59.47876 * 22 12 9 25 25 H 1.08994 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47214 * 300.00386 * 1 2 3 27 27 H 1.09000 * 109.47113 * 59.99956 * 1 2 3 28 28 H 1.09005 * 109.47515 * 239.99799 * 2 1 3 29 29 H 1.09000 * 109.47113 * 120.00044 * 2 1 3 30 30 H 1.09003 * 109.47675 * 60.00103 * 5 3 2 31 31 H 1.09005 * 109.47224 * 180.02562 * 5 3 2 32 32 H 1.09008 * 109.47449 * 299.99707 * 5 3 2 33 33 H 0.96996 * 120.00451 * 335.00118 * 6 3 2 34 34 H 1.09004 * 109.47048 * 60.00112 * 11 9 7 35 35 H 1.08995 * 109.46876 * 180.02562 * 11 9 7 36 36 H 1.08994 * 109.46857 * 300.00169 * 11 9 7 37 37 H 1.08996 * 109.46981 * 42.63819 * 13 12 9 38 38 H 1.09003 * 109.46854 * 282.63368 * 13 12 9 39 39 H 0.97005 * 120.00188 * 180.02562 * 17 16 14 40 40 H 1.08998 * 115.55171 * 273.81168 * 22 12 9 41 41 H 1.08997 * 117.49746 * 0.02562 * 23 22 12 42 42 H 1.09006 * 117.49882 * 145.01994 * 23 22 12 43 43 H 1.08996 * 117.50437 * 214.97984 * 24 22 12 44 44 H 1.09005 * 117.50111 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6525 2.0974 -1.2518 7 6 1.5257 3.4383 -1.2996 8 8 1.7320 4.1028 -0.3061 9 6 1.1276 4.1122 -2.5875 10 1 1.8666 3.8900 -3.3572 11 6 -0.2424 3.5953 -3.0312 12 7 1.0585 5.5647 -2.3791 13 6 0.6728 6.2562 -3.6165 14 6 0.2007 7.6490 -3.2873 15 1 0.2534 8.0110 -2.2712 16 6 -0.2985 8.4611 -4.2834 17 7 -0.3622 8.0204 -5.5209 18 14 -0.8910 10.1847 -3.8741 19 1 -0.7183 10.4353 -2.4206 20 1 -0.0985 11.1765 -4.6444 21 1 -2.3265 10.3128 -4.2319 22 6 2.3316 6.0835 -1.8615 23 6 2.9643 7.2660 -2.5979 24 6 3.5815 5.8712 -2.7180 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9995 0.9052 -0.7161 31 1 3.9282 2.4720 0.1262 32 1 3.8532 0.9569 1.0572 33 1 1.4871 1.5661 -2.0463 34 1 -0.9813 3.8176 -2.2613 35 1 -0.5300 4.0824 -3.9629 36 1 -0.1914 2.5176 -3.1857 37 1 -0.1313 5.7058 -4.1048 38 1 1.5325 6.3124 -4.2843 39 1 -0.7131 8.5919 -6.2218 40 1 2.4505 6.0425 -0.7788 41 1 2.4356 7.6593 -3.4661 42 1 3.4995 8.0034 -1.9996 43 1 4.5227 5.6910 -2.1988 44 1 3.4592 5.3462 -3.6654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:05 Heat of formation + Delta-G solvation = -7.350204 kcal Electronic energy + Delta-G solvation = -21808.536481 eV Core-core repulsion = 18761.921256 eV Total energy + Delta-G solvation = -3046.615225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91747 -37.95664 -36.12071 -33.83038 -32.71827 -32.05752 -30.05668 -28.95916 -26.84225 -24.37123 -23.51142 -22.24824 -21.58340 -20.86052 -20.05541 -18.75200 -16.78661 -16.39919 -15.95460 -15.86503 -14.71394 -14.59044 -14.23689 -14.01393 -13.94476 -13.51958 -13.46196 -13.17530 -12.26946 -12.26573 -12.17892 -12.07694 -11.84870 -11.45937 -11.40600 -11.23795 -11.19583 -10.96295 -10.81444 -10.72278 -10.68629 -10.16099 -9.92743 -9.70376 -9.41998 -9.18442 -8.88180 -8.78456 -8.38945 -7.15142 -6.00132 -3.98107 3.08831 3.34073 3.35324 3.42089 3.49211 4.45255 4.57434 4.63658 4.87738 4.91475 4.93618 5.15814 5.32385 5.34917 5.44687 5.48889 5.53984 5.63829 5.65205 5.76025 5.76793 5.82413 5.85700 5.92776 5.99090 6.03643 6.07385 6.19161 6.27895 6.30683 6.62947 6.67393 6.74466 6.93238 7.15979 7.23766 7.46670 7.71502 7.89499 8.12398 8.25198 8.54258 8.67170 9.10504 9.63853 11.10372 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.004785 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.168044 B = 5850.044724 C = 6318.774996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.086 0.914 5 C -0.163 4.163 6 N -0.733 5.733 7 C 0.525 3.475 8 O -0.520 6.520 9 C 0.068 3.932 10 H 0.054 0.946 11 C -0.141 4.141 12 N -0.486 5.486 13 C 0.181 3.819 14 C -0.490 4.490 15 H 0.066 0.934 16 C 0.053 3.947 17 N -0.902 5.902 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.048 3.952 23 C -0.176 4.176 24 C -0.237 4.237 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.040 0.960 38 H -0.004 1.004 39 H 0.260 0.740 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.839 -15.932 6.781 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.104 0.896 5 C -0.221 4.221 6 N -0.388 5.388 7 C 0.311 3.689 8 O -0.394 6.394 9 C -0.044 4.044 10 H 0.071 0.929 11 C -0.199 4.199 12 N -0.209 5.209 13 C 0.057 3.943 14 C -0.529 4.529 15 H 0.084 0.916 16 C -0.147 4.147 17 N -0.542 5.542 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.061 4.061 23 C -0.213 4.213 24 C -0.276 4.276 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.013 0.987 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.150 0.850 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.537 -15.283 7.705 17.707 hybrid contribution 0.324 0.487 -0.977 1.139 sum 4.861 -14.796 6.727 16.965 Atomic orbital electron populations 1.21771 0.95273 1.01423 1.02589 1.21822 0.96628 0.95663 1.02656 1.20906 0.94565 0.92725 0.88133 0.89584 1.22179 0.95814 1.02688 1.01458 1.46130 1.72278 1.07257 1.13085 1.20776 0.75801 0.81486 0.90838 1.90622 1.48580 1.63614 1.36629 1.21500 0.97977 0.92088 0.92852 0.92884 1.21857 0.95635 0.99016 1.03376 1.62096 1.26868 0.98819 1.33153 1.20021 0.95310 0.94292 0.84709 1.21159 1.39629 0.97139 0.94963 0.91598 1.24949 0.96150 0.98645 0.94972 1.69961 1.47180 1.36739 1.00309 0.86475 0.78296 0.84313 0.78613 1.19575 1.21224 1.21149 1.22744 0.85328 1.00952 0.97113 1.23543 1.02238 0.90332 1.05155 1.23311 0.98710 1.02940 1.02661 0.92800 0.92566 0.92279 0.91602 0.90755 0.92729 0.91942 0.92074 0.77085 0.91466 0.90298 0.93065 0.94228 0.98676 0.93084 0.86129 0.84955 0.90244 0.90380 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.80 37.16 0.36 -0.91 16 2 C -0.13 -1.03 5.47 -26.73 -0.15 -1.17 16 3 C 0.14 1.54 2.57 -67.93 -0.17 1.36 16 4 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 5 C -0.16 -1.69 9.48 37.15 0.35 -1.34 16 6 N -0.73 -8.97 4.42 -53.80 -0.24 -9.21 16 7 C 0.52 8.78 6.84 -10.98 -0.08 8.71 16 8 O -0.52 -10.51 13.62 5.55 0.08 -10.44 16 9 C 0.07 1.22 2.24 -68.86 -0.15 1.06 16 10 H 0.05 0.93 7.24 -51.93 -0.38 0.56 16 11 C -0.14 -2.26 8.92 37.16 0.33 -1.93 16 12 N -0.49 -10.79 4.38 -221.53 -0.97 -11.76 16 13 C 0.18 4.57 4.13 -4.97 -0.02 4.55 16 14 C -0.49 -13.55 6.83 -34.44 -0.24 -13.78 16 15 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 16 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 17 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.05 1.03 4.69 -67.72 -0.32 0.71 16 23 C -0.18 -3.73 8.88 -26.73 -0.24 -3.97 16 24 C -0.24 -4.54 9.38 -26.73 -0.25 -4.79 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.40 3.90 8.02 -40.82 -0.33 3.57 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.40 6.08 -51.93 -0.32 1.09 16 36 H 0.05 0.61 7.56 -51.93 -0.39 0.22 16 37 H 0.04 1.04 5.59 -51.93 -0.29 0.75 16 38 H 0.00 -0.12 6.00 -51.93 -0.31 -0.43 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.12 2.68 6.62 -51.93 -0.34 2.34 16 41 H 0.13 3.24 4.89 -51.93 -0.25 2.98 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.56 7.19 -51.93 -0.37 1.18 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -30.77 343.32 -8.46 -39.23 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.55 Total: 5.80 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.66 Total: -10.11 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.47 Total: -46.35 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.77 -8.46 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.876 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds