Wall clock time and date at job start Mon Mar 30 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47147 * 2 1 4 4 H 1.09005 * 109.46961 * 305.00095 * 3 2 1 5 5 C 1.53002 * 109.47369 * 185.00168 * 3 2 1 6 6 N 1.46504 * 109.47217 * 65.00062 * 3 2 1 7 7 C 1.34770 * 119.99877 * 205.00217 * 6 3 2 8 8 O 1.21284 * 120.00579 * 359.97438 * 7 6 3 9 9 C 1.50704 * 120.00021 * 179.97438 * 7 6 3 10 10 H 1.09002 * 109.47106 * 299.99788 * 9 7 6 11 11 C 1.52998 * 109.46879 * 59.99782 * 9 7 6 12 12 N 1.46901 * 109.47357 * 179.97438 * 9 7 6 13 13 C 1.46894 * 110.99862 * 179.97438 * 12 9 7 14 14 C 1.50709 * 109.47019 * 163.07211 * 13 12 9 15 15 H 1.07998 * 119.99522 * 5.11372 * 14 13 12 16 16 C 1.37876 * 120.00136 * 185.11553 * 14 13 12 17 17 N 1.31509 * 120.00169 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99617 * 359.72361 * 16 14 13 19 19 H 1.48494 * 109.47262 * 90.00448 * 18 16 14 20 20 H 1.48510 * 109.46752 * 210.00069 * 18 16 14 21 21 H 1.48493 * 109.47445 * 329.99791 * 18 16 14 22 22 C 1.46904 * 110.99915 * 56.04556 * 12 9 7 23 23 C 1.53004 * 117.49598 * 126.78780 * 22 12 9 24 24 C 1.53005 * 117.49767 * 58.16652 * 22 12 9 25 25 H 1.08998 * 109.46979 * 300.00038 * 1 2 3 26 26 H 1.09001 * 109.47482 * 59.99852 * 1 2 3 27 27 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46979 * 239.99962 * 2 1 3 29 29 H 1.08995 * 109.47082 * 120.00170 * 2 1 3 30 30 H 1.08998 * 109.46646 * 299.99941 * 5 3 2 31 31 H 1.09000 * 109.47052 * 59.99572 * 5 3 2 32 32 H 1.08993 * 109.47096 * 179.97438 * 5 3 2 33 33 H 0.96998 * 119.99772 * 24.99631 * 6 3 2 34 34 H 1.09002 * 109.47246 * 60.00093 * 11 9 7 35 35 H 1.09000 * 109.46904 * 179.97438 * 11 9 7 36 36 H 1.09001 * 109.47349 * 300.00161 * 11 9 7 37 37 H 1.08994 * 109.47502 * 43.07530 * 13 12 9 38 38 H 1.08998 * 109.47547 * 283.07166 * 13 12 9 39 39 H 0.96997 * 120.00024 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54923 * 272.49637 * 22 12 9 41 41 H 1.08997 * 117.49667 * 0.02562 * 23 22 12 42 42 H 1.09007 * 117.49429 * 145.01966 * 23 22 12 43 43 H 1.09001 * 117.49690 * 214.97873 * 24 22 12 44 44 H 1.08993 * 117.49373 * 0.02562 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 1.6525 2.0975 1.2518 7 6 1.5256 3.4384 1.2996 8 8 1.7327 4.1029 0.3063 9 6 1.1264 4.1122 2.5871 10 1 0.1501 3.7439 2.9024 11 6 2.1627 3.8001 3.6686 12 7 1.0586 5.5648 2.3791 13 6 0.6707 6.2561 3.6159 14 6 1.0071 7.7205 3.4994 15 1 1.3865 8.1150 2.5684 16 6 0.8306 8.5566 4.5815 17 7 1.1246 9.8344 4.4800 18 14 0.1672 7.8755 6.1895 19 1 1.2977 7.4228 7.0392 20 1 -0.5925 8.9355 6.9000 21 1 -0.7311 6.7272 5.9076 22 6 0.1412 5.8971 1.2809 23 6 -0.9687 6.9099 1.5696 24 6 -1.3096 5.4274 1.4057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9994 0.9054 0.7161 31 1 3.8532 0.9570 -1.0571 32 1 3.9281 2.4720 -0.1262 33 1 1.4871 1.5661 2.0463 34 1 3.1390 4.1683 3.3533 35 1 1.8742 4.2878 4.5997 36 1 2.2135 2.7223 3.8230 37 1 1.2118 5.8250 4.4581 38 1 -0.4013 6.1411 3.7755 39 1 1.0000 10.4226 5.2412 40 1 0.5837 5.9051 0.2848 41 1 -1.0178 7.3300 2.5742 42 1 -1.2564 7.5847 0.7632 43 1 -1.8216 5.1267 0.4916 44 1 -1.5834 4.8722 2.3028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:07 Heat of formation + Delta-G solvation = -1.995369 kcal Electronic energy + Delta-G solvation = -21866.858471 eV Core-core repulsion = 18820.475449 eV Total energy + Delta-G solvation = -3046.383022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01311 -38.08070 -36.18307 -33.94536 -32.67046 -32.12592 -30.17233 -29.26358 -27.31712 -24.39853 -23.50538 -22.08853 -21.63853 -20.92196 -20.10220 -18.76023 -16.97468 -16.65426 -16.15219 -15.94731 -14.96066 -14.53044 -14.31427 -13.98435 -13.82812 -13.72294 -13.55083 -13.12501 -12.61761 -12.52540 -12.28716 -12.09757 -11.92647 -11.59353 -11.45714 -11.40304 -11.31797 -11.10166 -10.85081 -10.75126 -10.64704 -10.29020 -9.89480 -9.83064 -9.47871 -9.22903 -9.01818 -8.83118 -8.53430 -7.29233 -6.01500 -3.96435 3.01180 3.26382 3.28233 3.34913 3.35602 4.42050 4.50411 4.53155 4.76005 4.83144 4.87302 5.05321 5.27759 5.29263 5.37845 5.41362 5.45442 5.50419 5.60757 5.70744 5.72056 5.73246 5.76265 5.82569 5.86972 5.97298 6.02508 6.12491 6.18074 6.19460 6.47213 6.59919 6.67552 6.73481 6.87696 6.91273 7.29089 7.58414 7.67639 7.93170 8.05804 8.58555 8.69795 9.13742 9.59219 11.11762 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027919 B = 0.004983 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.673199 B = 5617.363485 C = 5828.675350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.142 3.858 4 H 0.086 0.914 5 C -0.163 4.163 6 N -0.733 5.733 7 C 0.525 3.475 8 O -0.517 6.517 9 C 0.064 3.936 10 H 0.054 0.946 11 C -0.143 4.143 12 N -0.476 5.476 13 C 0.153 3.847 14 C -0.494 4.494 15 H 0.084 0.916 16 C 0.068 3.932 17 N -0.898 5.898 18 Si 0.868 3.132 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.050 3.950 23 C -0.170 4.170 24 C -0.239 4.239 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.029 0.971 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 -20.461 -5.305 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.104 0.896 5 C -0.222 4.222 6 N -0.387 5.387 7 C 0.311 3.689 8 O -0.390 6.390 9 C -0.048 4.048 10 H 0.072 0.928 11 C -0.200 4.200 12 N -0.199 5.199 13 C 0.027 3.973 14 C -0.533 4.533 15 H 0.102 0.898 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.695 3.305 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.059 4.059 23 C -0.207 4.207 24 C -0.278 4.278 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.229 0.771 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.281 -19.615 -6.065 20.533 hybrid contribution -1.271 -0.827 1.598 2.203 sum -1.551 -20.442 -4.467 20.982 Atomic orbital electron populations 1.21770 0.95388 1.01425 1.02435 1.21825 0.96509 0.95717 1.02745 1.20914 0.94747 0.92637 0.87977 0.89614 1.22180 0.95629 1.02888 1.01493 1.46115 1.72327 1.07161 1.13127 1.20646 0.76253 0.81499 0.90491 1.90642 1.48261 1.63567 1.36571 1.21549 0.98634 0.91934 0.92659 0.92805 1.21870 0.99675 1.00103 0.98401 1.61942 1.48750 1.02059 1.07145 1.20436 0.93891 0.95902 0.87092 1.20969 1.42410 0.89710 1.00175 0.89817 1.24867 0.95532 0.94797 0.98113 1.69884 1.48996 1.03782 1.31088 0.86986 0.79594 0.79041 0.84872 1.20174 1.21202 1.19416 1.22720 0.84175 1.02400 0.96586 1.23499 1.01438 0.90506 1.05269 1.23354 1.02804 1.00023 1.01638 0.92465 0.92591 0.92771 0.90665 0.91560 0.92669 0.92059 0.91742 0.77124 0.91081 0.90847 0.92749 0.95277 0.98970 0.92722 0.85816 0.85418 0.89816 0.90099 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.80 37.16 0.36 -0.83 16 2 C -0.13 -0.97 5.47 -26.73 -0.15 -1.12 16 3 C 0.14 1.48 2.57 -67.93 -0.17 1.30 16 4 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 5 C -0.16 -1.66 9.48 37.16 0.35 -1.30 16 6 N -0.73 -8.52 4.42 -53.80 -0.24 -8.76 16 7 C 0.52 8.47 6.84 -10.99 -0.08 8.39 16 8 O -0.52 -10.22 13.65 5.55 0.08 -10.15 16 9 C 0.06 1.10 2.22 -68.86 -0.15 0.94 16 10 H 0.05 0.87 7.17 -51.93 -0.37 0.50 16 11 C -0.14 -2.14 8.92 37.16 0.33 -1.80 16 12 N -0.48 -10.27 4.38 -221.52 -0.97 -11.24 16 13 C 0.15 3.61 3.20 -4.97 -0.02 3.60 16 14 C -0.49 -13.83 7.43 -34.44 -0.26 -14.09 16 15 H 0.08 2.63 8.04 -52.49 -0.42 2.21 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 18 Si 0.87 21.01 27.37 -169.99 -4.65 16.35 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.24 6.69 56.52 0.38 -5.86 16 22 C 0.05 1.06 4.64 -67.71 -0.31 0.74 16 23 C -0.17 -3.56 8.86 -26.73 -0.24 -3.80 16 24 C -0.24 -4.38 9.39 -26.73 -0.25 -4.63 16 25 H 0.06 0.49 7.75 -51.93 -0.40 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.39 3.61 8.02 -40.82 -0.33 3.28 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.17 6.08 -51.93 -0.32 0.85 16 36 H 0.05 0.60 7.56 -51.93 -0.39 0.20 16 37 H 0.03 0.68 4.75 -51.93 -0.25 0.43 16 38 H -0.01 -0.17 5.44 -51.93 -0.28 -0.45 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.12 2.73 6.69 -51.93 -0.35 2.38 16 41 H 0.13 3.03 4.92 -51.93 -0.26 2.78 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 1.42 7.19 -51.93 -0.37 1.04 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -31.77 339.89 -8.08 -39.85 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.52 Total: 6.13 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.67 Total: -10.75 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.43 Total: -46.55 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.65 Total: 16.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.77 -8.08 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.858 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds