Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.09002 * 109.47264 * 55.00357 * 3 2 1 5 5 C 1.53001 * 109.47208 * 174.99923 * 3 2 1 6 6 N 1.46496 * 109.47511 * 295.00212 * 3 2 1 7 7 C 1.34778 * 120.00132 * 154.99483 * 6 3 2 8 8 O 1.21273 * 120.00131 * 0.02562 * 7 6 3 9 9 C 1.50706 * 119.99623 * 179.97438 * 7 6 3 10 10 H 1.09007 * 109.46589 * 60.00695 * 9 7 6 11 11 C 1.52993 * 109.47414 * 300.00249 * 9 7 6 12 12 N 1.46901 * 109.46876 * 180.02562 * 9 7 6 13 13 C 1.46895 * 110.99872 * 180.02562 * 12 9 7 14 14 C 1.50695 * 109.47565 * 54.81080 * 13 12 9 15 15 H 1.08004 * 119.99499 * 5.18452 * 14 13 12 16 16 C 1.37870 * 120.00527 * 185.18463 * 14 13 12 17 17 N 1.31520 * 119.99891 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00393 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47321 * 89.99706 * 18 16 14 20 20 H 1.48504 * 109.46955 * 209.99859 * 18 16 14 21 21 H 1.48501 * 109.47017 * 329.99700 * 18 16 14 22 22 C 1.46899 * 111.00111 * 303.95866 * 12 9 7 23 23 C 1.53005 * 117.49833 * 235.97684 * 22 12 9 24 24 C 1.53001 * 117.50257 * 167.35247 * 22 12 9 25 25 H 1.08996 * 109.47466 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47265 * 299.99875 * 1 2 3 27 27 H 1.08995 * 109.47324 * 59.99686 * 1 2 3 28 28 H 1.09004 * 109.47265 * 240.00125 * 2 1 3 29 29 H 1.08995 * 109.47324 * 120.00314 * 2 1 3 30 30 H 1.09003 * 109.46996 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47095 * 300.00106 * 5 3 2 32 32 H 1.08994 * 109.46933 * 60.00309 * 5 3 2 33 33 H 0.97003 * 120.00046 * 335.00285 * 6 3 2 34 34 H 1.08998 * 109.46803 * 179.97438 * 11 9 7 35 35 H 1.09008 * 109.47046 * 60.00320 * 11 9 7 36 36 H 1.08994 * 109.47360 * 300.00430 * 11 9 7 37 37 H 1.09004 * 109.46798 * 174.80998 * 13 12 9 38 38 H 1.08997 * 109.47195 * 294.80528 * 13 12 9 39 39 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 40 40 H 1.08997 * 115.55252 * 21.68219 * 22 12 9 41 41 H 1.08996 * 117.49884 * 359.97438 * 23 22 12 42 42 H 1.09002 * 117.50015 * 145.02155 * 23 22 12 43 43 H 1.08996 * 117.50272 * 214.98189 * 24 22 12 44 44 H 1.09004 * 117.49321 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0976 -1.2517 7 6 1.5255 3.4385 -1.2994 8 8 1.7326 4.1029 -0.3062 9 6 1.1274 4.1123 -2.5873 10 1 0.1513 3.7440 -2.9033 11 6 2.1646 3.8005 -3.6679 12 7 1.0593 5.5649 -2.3792 13 6 0.6725 6.2564 -3.6162 14 6 -0.6204 5.6787 -4.1315 15 1 -1.1495 4.9370 -3.5514 16 6 -1.1279 6.0968 -5.3432 17 7 -0.4838 7.0003 -6.0493 18 14 -2.7310 5.3812 -5.9816 19 1 -3.8677 6.2076 -5.5020 20 1 -2.7143 5.3765 -7.4666 21 1 -2.8852 3.9906 -5.4839 22 6 0.1410 5.8971 -1.2817 23 6 -1.0075 6.8602 -1.5886 24 6 0.1763 7.3273 -0.7393 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.9281 2.4720 0.1262 31 1 3.8531 0.9570 1.0571 32 1 3.9994 0.9054 -0.7161 33 1 1.4870 1.5662 -2.0462 34 1 1.8763 4.2875 -4.5994 35 1 2.2155 2.7226 -3.8225 36 1 3.1405 4.1687 -3.3518 37 1 0.5399 7.3189 -3.4122 38 1 1.4533 6.1249 -4.3653 39 1 -0.8407 7.2943 -6.9021 40 1 -0.0517 5.0938 -0.5706 41 1 -1.0816 7.2477 -2.6047 42 1 -1.9563 6.6906 -1.0794 43 1 0.0065 7.4649 0.3285 44 1 0.8813 8.0216 -1.1966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -9.484883 kcal Electronic energy + Delta-G solvation = -21986.309871 eV Core-core repulsion = 18939.602079 eV Total energy + Delta-G solvation = -3046.707792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84051 -37.78485 -36.07120 -33.99142 -32.63396 -32.00550 -29.97562 -28.81828 -26.74392 -24.35276 -23.64541 -22.06119 -21.28138 -20.82585 -19.98429 -18.83526 -16.91151 -16.35655 -16.15827 -15.36586 -14.86182 -14.64735 -14.07428 -13.96216 -13.84429 -13.44306 -13.15426 -12.94362 -12.34505 -12.31922 -11.95451 -11.82239 -11.75437 -11.36545 -11.33373 -11.21167 -11.15523 -11.06798 -10.81504 -10.75359 -10.64243 -10.03707 -9.92580 -9.82865 -9.40420 -9.26831 -8.92742 -8.70641 -8.45371 -6.99298 -6.04671 -4.13163 3.15388 3.24834 3.32549 3.34014 3.45187 4.37333 4.62002 4.74437 4.92299 4.97065 5.11137 5.24342 5.30160 5.38093 5.50358 5.54468 5.68765 5.79541 5.80514 5.81800 5.94380 5.98518 6.03085 6.08044 6.10415 6.13521 6.19757 6.24662 6.50241 6.58221 6.63042 6.77834 6.85256 6.94990 7.28417 7.37198 7.56137 7.78431 7.88364 8.06035 8.27608 8.32179 8.71603 8.95602 9.51518 10.98967 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.005827 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.168073 B = 4804.035928 C = 5313.841897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.084 0.916 5 C -0.162 4.162 6 N -0.733 5.733 7 C 0.516 3.484 8 O -0.525 6.525 9 C 0.076 3.924 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.493 5.493 13 C 0.181 3.819 14 C -0.539 4.539 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.047 3.953 23 C -0.208 4.208 24 C -0.184 4.184 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.397 0.603 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 -12.575 8.551 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.102 0.898 5 C -0.221 4.221 6 N -0.387 5.387 7 C 0.303 3.697 8 O -0.400 6.400 9 C -0.036 4.036 10 H 0.094 0.906 11 C -0.192 4.192 12 N -0.216 5.216 13 C 0.056 3.944 14 C -0.578 4.578 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.714 3.286 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.063 4.063 23 C -0.247 4.247 24 C -0.222 4.222 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.368 -11.816 9.232 15.619 hybrid contribution -1.856 -0.862 -1.026 2.289 sum 2.512 -12.679 8.207 15.310 Atomic orbital electron populations 1.21774 0.95365 1.01442 1.02512 1.21820 0.96545 0.95739 1.02665 1.20894 0.94635 0.92663 0.88168 0.89775 1.22171 0.95771 1.02734 1.01400 1.46168 1.72120 1.07366 1.13044 1.21126 0.75904 0.81516 0.91113 1.90646 1.48781 1.63677 1.36911 1.21369 0.99977 0.91187 0.91097 0.90594 1.21715 0.98134 0.99882 0.99423 1.62174 1.47686 1.04146 1.07585 1.19954 0.94968 0.94318 0.85121 1.21672 1.07912 1.24049 1.04154 0.92447 1.24926 0.97063 0.95013 0.96671 1.69941 1.38836 1.30224 1.13752 0.86696 0.84362 0.79549 0.78031 1.20660 1.21250 1.20031 1.22275 0.95275 0.92524 0.96196 1.23774 0.92012 1.06196 1.02715 1.22915 1.02360 0.98959 0.97958 0.92785 0.92671 0.92282 0.91526 0.90795 0.91870 0.92185 0.92664 0.76920 0.89785 0.93348 0.92578 0.94796 0.94220 0.92792 0.88120 0.85234 0.91189 0.90516 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.80 37.15 0.36 -1.04 16 2 C -0.13 -1.12 5.47 -26.73 -0.15 -1.26 16 3 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 4 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 5 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 6 N -0.73 -9.59 4.42 -53.81 -0.24 -9.83 16 7 C 0.52 9.02 6.55 -10.98 -0.07 8.94 16 8 O -0.53 -10.80 13.72 5.56 0.08 -10.73 16 9 C 0.08 1.44 2.11 -68.86 -0.15 1.30 16 10 H 0.08 1.54 6.26 -51.93 -0.33 1.21 16 11 C -0.13 -2.29 8.85 37.15 0.33 -1.97 16 12 N -0.49 -10.88 4.61 -221.53 -1.02 -11.90 16 13 C 0.18 4.48 4.15 -4.98 -0.02 4.46 16 14 C -0.54 -13.79 5.69 -34.45 -0.20 -13.99 16 15 H 0.06 1.48 6.30 -52.48 -0.33 1.15 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 18 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 22 C 0.05 1.01 4.60 -67.71 -0.31 0.70 16 23 C -0.21 -4.45 8.68 -26.73 -0.23 -4.68 16 24 C -0.18 -3.72 10.08 -26.73 -0.27 -3.99 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.60 7.75 -51.93 -0.40 0.20 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 4.38 8.02 -40.82 -0.33 4.05 16 34 H 0.08 1.64 6.52 -51.93 -0.34 1.30 16 35 H 0.05 0.66 7.57 -51.92 -0.39 0.26 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.91 6.35 -51.93 -0.33 0.58 16 38 H 0.04 1.05 6.59 -51.93 -0.34 0.70 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.10 2.19 5.97 -51.93 -0.31 1.87 16 41 H 0.13 3.15 4.91 -51.93 -0.25 2.90 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.79 8.04 -51.93 -0.42 1.38 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -29.12 341.99 -8.46 -37.58 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.53 Total: 8.21 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -0.62 Total: -9.83 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.52 Total: -45.95 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.12 -8.46 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.094 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds