Wall clock time and date at job start Mon Mar 30 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 H 1.08991 * 109.47268 * 305.00198 * 3 2 1 5 5 C 1.53002 * 109.46959 * 184.99814 * 3 2 1 6 6 N 1.46495 * 109.46783 * 65.00355 * 3 2 1 7 7 C 1.34781 * 120.00217 * 204.99780 * 6 3 2 8 8 O 1.21277 * 119.99459 * 359.97438 * 7 6 3 9 9 C 1.50692 * 120.00357 * 179.72495 * 7 6 3 10 10 H 1.09003 * 109.47279 * 60.27564 * 9 7 6 11 11 C 1.52999 * 109.47203 * 300.27689 * 9 7 6 12 12 N 1.46901 * 109.47525 * 180.27485 * 9 7 6 13 13 C 1.46893 * 111.00393 * 179.97438 * 12 9 7 14 14 C 1.50693 * 109.47381 * 54.80731 * 13 12 9 15 15 H 1.08003 * 120.00141 * 5.18886 * 14 13 12 16 16 C 1.37880 * 120.00319 * 185.18390 * 14 13 12 17 17 N 1.31516 * 119.99988 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46559 * 120.00134 * 18 16 14 21 21 H 1.48496 * 109.46926 * 239.99700 * 18 16 14 22 22 C 1.46898 * 110.99909 * 303.95908 * 12 9 7 23 23 C 1.53005 * 117.49623 * 235.97245 * 22 12 9 24 24 C 1.52992 * 117.50045 * 167.35255 * 22 12 9 25 25 H 1.09002 * 109.46931 * 299.99604 * 1 2 3 26 26 H 1.08999 * 109.47136 * 59.99535 * 1 2 3 27 27 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46931 * 240.00396 * 2 1 3 29 29 H 1.08999 * 109.47136 * 120.00465 * 2 1 3 30 30 H 1.09001 * 109.47008 * 180.02562 * 5 3 2 31 31 H 1.08991 * 109.47444 * 300.00276 * 5 3 2 32 32 H 1.09003 * 109.46978 * 60.00424 * 5 3 2 33 33 H 0.97004 * 120.00335 * 25.00106 * 6 3 2 34 34 H 1.09000 * 109.47679 * 180.02562 * 11 9 7 35 35 H 1.09003 * 109.46901 * 300.00107 * 11 9 7 36 36 H 1.09000 * 109.47124 * 59.99815 * 11 9 7 37 37 H 1.08997 * 109.47479 * 174.81434 * 13 12 9 38 38 H 1.09007 * 109.47226 * 294.81042 * 13 12 9 39 39 H 0.96997 * 119.99847 * 180.02562 * 17 16 14 40 40 H 1.08998 * 115.54964 * 21.67295 * 22 12 9 41 41 H 1.09001 * 117.49893 * 359.97438 * 23 22 12 42 42 H 1.09002 * 117.49970 * 145.01379 * 23 22 12 43 43 H 1.09000 * 117.49667 * 214.97545 * 24 22 12 44 44 H 1.09001 * 117.49924 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4384 1.2998 8 8 1.7329 4.1028 0.3066 9 6 1.1210 4.1115 2.5858 10 1 1.8585 3.8927 3.3581 11 6 -0.2482 3.5896 3.0258 12 7 1.0474 5.5636 2.3764 13 6 0.6541 6.2544 3.6117 14 6 1.5967 5.8714 4.7234 15 1 2.4553 5.2507 4.5136 16 6 1.3631 6.3134 6.0084 17 7 0.3174 7.0689 6.2640 18 14 2.5319 5.8391 7.3862 19 1 3.6210 4.9894 6.8410 20 1 3.1141 7.0666 7.9859 21 1 1.7895 5.0838 8.4271 22 6 2.3203 6.0866 1.8626 23 6 2.9945 7.2085 2.6551 24 6 2.3271 7.5144 1.3128 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9283 2.4719 -0.1252 31 1 3.9995 0.9053 0.7160 32 1 3.8532 0.9570 -1.0571 33 1 1.4872 1.5659 2.0463 34 1 -0.5412 4.0768 3.9558 35 1 -0.9857 3.8083 2.2535 36 1 -0.1936 2.5121 3.1812 37 1 0.6965 7.3322 3.4546 38 1 -0.3620 5.9663 3.8815 39 1 0.1533 7.3801 7.1679 40 1 2.9659 5.3564 1.3748 41 1 2.4933 7.5587 3.5574 42 1 4.0840 7.2163 2.6888 43 1 2.9774 7.7235 0.4634 44 1 1.3868 8.0655 1.3320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:13 Heat of formation + Delta-G solvation = -9.555313 kcal Electronic energy + Delta-G solvation = -21980.727648 eV Core-core repulsion = 18934.016802 eV Total energy + Delta-G solvation = -3046.710846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84239 -37.78294 -36.07130 -33.99379 -32.63256 -32.00683 -30.00764 -28.78485 -26.74708 -24.38432 -23.63287 -22.06887 -21.28106 -20.81572 -19.98715 -18.82178 -16.92872 -16.37264 -16.15477 -15.42626 -14.72355 -14.66772 -14.04717 -13.99103 -13.89689 -13.43280 -13.11196 -13.04610 -12.42939 -12.14128 -12.00839 -11.83392 -11.72559 -11.45530 -11.28009 -11.19970 -11.16211 -11.08715 -10.80025 -10.75818 -10.65266 -10.02585 -9.92462 -9.83228 -9.41876 -9.26273 -8.86031 -8.75912 -8.45771 -6.99246 -6.04873 -4.13264 3.15364 3.23547 3.32900 3.35387 3.45017 4.37350 4.61817 4.74500 4.92327 4.96872 5.11076 5.24409 5.30021 5.37825 5.49616 5.53857 5.68191 5.79466 5.80087 5.81566 5.94385 5.98621 6.03445 6.06432 6.11015 6.13064 6.19536 6.23649 6.50157 6.58197 6.62787 6.77743 6.85105 6.94960 7.28302 7.37102 7.56292 7.78347 7.88276 8.06021 8.27615 8.32138 8.71544 8.95803 9.51492 10.98762 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.005706 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.811584 B = 4905.741397 C = 5420.868923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.085 0.915 5 C -0.163 4.163 6 N -0.733 5.733 7 C 0.516 3.484 8 O -0.525 6.525 9 C 0.076 3.924 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.493 5.493 13 C 0.181 3.819 14 C -0.538 4.538 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.047 3.953 23 C -0.208 4.208 24 C -0.184 4.184 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.397 0.603 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -12.709 -8.961 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.103 0.897 5 C -0.222 4.222 6 N -0.387 5.387 7 C 0.303 3.697 8 O -0.400 6.400 9 C -0.036 4.036 10 H 0.094 0.906 11 C -0.192 4.192 12 N -0.216 5.216 13 C 0.056 3.944 14 C -0.577 4.577 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.063 4.063 23 C -0.247 4.247 24 C -0.222 4.222 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.906 -12.035 -9.908 15.705 hybrid contribution 1.276 -0.587 1.871 2.339 sum 3.182 -12.622 -8.038 15.299 Atomic orbital electron populations 1.21770 0.95301 1.01392 1.02558 1.21820 0.96614 0.95697 1.02646 1.20895 0.94519 0.92725 0.88220 0.89664 1.22183 0.95886 1.02632 1.01471 1.46168 1.72101 1.07378 1.13047 1.21123 0.75754 0.81562 0.91220 1.90647 1.48993 1.63652 1.36720 1.21367 0.99004 0.90920 0.92347 0.90591 1.21718 0.95257 0.99055 1.03127 1.62158 1.27024 1.00503 1.31914 1.19958 0.96485 0.94445 0.83503 1.21712 1.10518 1.32142 0.93344 0.92393 1.24930 0.95160 0.95047 0.98558 1.69950 1.27247 1.34809 1.20744 0.86647 0.81206 0.78402 0.82443 1.19876 1.20995 1.21042 1.22276 0.92442 0.90487 1.01082 1.23771 0.98446 1.05765 0.96712 1.22912 1.02035 1.00288 0.96946 0.92216 0.92645 0.92829 0.90815 0.91559 0.92027 0.92671 0.92104 0.76923 0.89781 0.92573 0.93348 0.94788 0.94213 0.92849 0.88109 0.85240 0.91188 0.90518 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.13 -1.10 5.47 -26.73 -0.15 -1.25 16 3 C 0.14 1.62 2.57 -67.93 -0.17 1.44 16 4 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 5 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 6 N -0.73 -9.58 4.42 -53.81 -0.24 -9.82 16 7 C 0.52 9.01 6.55 -10.99 -0.07 8.94 16 8 O -0.53 -10.80 13.72 5.56 0.08 -10.73 16 9 C 0.08 1.44 2.11 -68.87 -0.15 1.30 16 10 H 0.08 1.54 6.26 -51.93 -0.33 1.21 16 11 C -0.13 -2.28 8.85 37.16 0.33 -1.95 16 12 N -0.49 -10.88 4.61 -221.54 -1.02 -11.90 16 13 C 0.18 4.47 4.15 -4.98 -0.02 4.45 16 14 C -0.54 -13.78 5.70 -34.44 -0.20 -13.97 16 15 H 0.06 1.50 6.30 -52.48 -0.33 1.17 16 16 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 18 Si 0.88 20.60 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.05 1.01 4.60 -67.71 -0.31 0.70 16 23 C -0.21 -4.45 8.68 -26.73 -0.23 -4.68 16 24 C -0.18 -3.72 10.08 -26.74 -0.27 -3.98 16 25 H 0.06 0.57 7.75 -51.93 -0.40 0.17 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.37 8.01 -40.82 -0.33 4.04 16 34 H 0.08 1.64 6.52 -51.93 -0.34 1.30 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 37 H 0.03 0.92 6.35 -51.93 -0.33 0.59 16 38 H 0.04 1.05 6.59 -51.92 -0.34 0.70 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.10 2.19 5.97 -51.93 -0.31 1.88 16 41 H 0.13 3.15 4.91 -51.93 -0.26 2.89 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.09 1.79 8.04 -51.93 -0.42 1.38 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -29.19 341.98 -8.46 -37.65 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.53 Total: 8.08 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -0.62 Total: -9.79 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.52 Total: -45.93 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.19 -8.46 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.091 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds