Wall clock time and date at job start Mon Mar 30 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 H 1.08991 * 109.47268 * 305.00198 * 3 2 1 5 5 C 1.53002 * 109.46959 * 184.99814 * 3 2 1 6 6 N 1.46495 * 109.46783 * 65.00355 * 3 2 1 7 7 C 1.34781 * 120.00217 * 204.99780 * 6 3 2 8 8 O 1.21277 * 119.99459 * 359.97438 * 7 6 3 9 9 C 1.50692 * 120.00357 * 179.72495 * 7 6 3 10 10 H 1.09003 * 109.47279 * 60.27564 * 9 7 6 11 11 C 1.52999 * 109.47203 * 300.27689 * 9 7 6 12 12 N 1.46901 * 109.47525 * 180.27485 * 9 7 6 13 13 C 1.46893 * 111.00393 * 179.97438 * 12 9 7 14 14 C 1.50693 * 109.47381 * 54.80731 * 13 12 9 15 15 H 1.08003 * 120.00141 * 5.18886 * 14 13 12 16 16 C 1.37880 * 120.00319 * 185.18390 * 14 13 12 17 17 N 1.31516 * 119.99988 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47094 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46559 * 120.00134 * 18 16 14 21 21 H 1.48496 * 109.46926 * 239.99700 * 18 16 14 22 22 C 1.46898 * 110.99909 * 303.95908 * 12 9 7 23 23 C 1.53005 * 117.49623 * 235.97245 * 22 12 9 24 24 C 1.52992 * 117.50045 * 167.35255 * 22 12 9 25 25 H 1.09002 * 109.46931 * 299.99604 * 1 2 3 26 26 H 1.08999 * 109.47136 * 59.99535 * 1 2 3 27 27 H 1.08996 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46931 * 240.00396 * 2 1 3 29 29 H 1.08999 * 109.47136 * 120.00465 * 2 1 3 30 30 H 1.09001 * 109.47008 * 180.02562 * 5 3 2 31 31 H 1.08991 * 109.47444 * 300.00276 * 5 3 2 32 32 H 1.09003 * 109.46978 * 60.00424 * 5 3 2 33 33 H 0.97004 * 120.00335 * 25.00106 * 6 3 2 34 34 H 1.09000 * 109.47679 * 180.02562 * 11 9 7 35 35 H 1.09003 * 109.46901 * 300.00107 * 11 9 7 36 36 H 1.09000 * 109.47124 * 59.99815 * 11 9 7 37 37 H 1.08997 * 109.47479 * 174.81434 * 13 12 9 38 38 H 1.09007 * 109.47226 * 294.81042 * 13 12 9 39 39 H 0.96997 * 119.99847 * 180.02562 * 17 16 14 40 40 H 1.08998 * 115.54964 * 21.67295 * 22 12 9 41 41 H 1.09001 * 117.49893 * 359.97438 * 23 22 12 42 42 H 1.09002 * 117.49970 * 145.01379 * 23 22 12 43 43 H 1.09000 * 117.49667 * 214.97545 * 24 22 12 44 44 H 1.09001 * 117.49924 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4384 1.2998 8 8 1.7329 4.1028 0.3066 9 6 1.1210 4.1115 2.5858 10 1 1.8585 3.8927 3.3581 11 6 -0.2482 3.5896 3.0258 12 7 1.0474 5.5636 2.3764 13 6 0.6541 6.2544 3.6117 14 6 1.5967 5.8714 4.7234 15 1 2.4553 5.2507 4.5136 16 6 1.3631 6.3134 6.0084 17 7 0.3174 7.0689 6.2640 18 14 2.5319 5.8391 7.3862 19 1 3.6210 4.9894 6.8410 20 1 3.1141 7.0666 7.9859 21 1 1.7895 5.0838 8.4271 22 6 2.3203 6.0866 1.8626 23 6 2.9945 7.2085 2.6551 24 6 2.3271 7.5144 1.3128 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9283 2.4719 -0.1252 31 1 3.9995 0.9053 0.7160 32 1 3.8532 0.9570 -1.0571 33 1 1.4872 1.5659 2.0463 34 1 -0.5412 4.0768 3.9558 35 1 -0.9857 3.8083 2.2535 36 1 -0.1936 2.5121 3.1812 37 1 0.6965 7.3322 3.4546 38 1 -0.3620 5.9663 3.8815 39 1 0.1533 7.3801 7.1679 40 1 2.9659 5.3564 1.3748 41 1 2.4933 7.5587 3.5574 42 1 4.0840 7.2163 2.6888 43 1 2.9774 7.7235 0.4634 44 1 1.3868 8.0655 1.3320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:12 Heat of formation + Delta-G solvation = -28.321670 kcal Electronic energy + Delta-G solvation = -21981.541418 eV Core-core repulsion = 18934.016802 eV Total energy + Delta-G solvation = -3047.524616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26397 -39.33390 -37.23401 -35.66986 -34.54908 -33.16544 -31.15157 -30.17107 -28.61470 -25.90811 -24.72927 -23.60614 -22.98106 -21.92988 -21.33784 -20.51529 -18.63186 -17.95146 -17.68168 -16.83769 -16.54967 -16.08603 -15.51905 -15.12126 -14.97304 -14.61022 -14.41689 -14.29527 -14.10043 -13.69421 -13.44461 -13.16599 -13.05709 -12.89467 -12.68853 -12.62987 -12.54866 -12.44084 -12.19615 -11.92968 -11.89400 -11.78760 -11.70161 -11.57687 -11.10174 -11.04807 -10.53351 -10.36956 -9.96486 -8.80459 -8.07215 -6.24361 1.38804 1.42429 1.51867 1.75885 2.24296 2.41806 3.06737 3.15958 3.48559 3.78398 3.98622 4.13690 4.22905 4.23862 4.27438 4.35972 4.39156 4.52584 4.53867 4.66987 4.68612 4.79162 4.88646 4.89516 4.94893 5.03039 5.10752 5.15102 5.21330 5.24036 5.30893 5.34029 5.36782 5.45551 5.47170 5.60016 5.68823 5.81169 6.09122 6.29991 6.49142 6.71473 6.92494 7.39661 7.43947 8.93993 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.005706 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.811584 B = 4905.741397 C = 5420.868923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.139 3.861 4 H 0.063 0.937 5 C -0.159 4.159 6 N -0.713 5.713 7 C 0.522 3.478 8 O -0.560 6.560 9 C 0.072 3.928 10 H 0.066 0.934 11 C -0.125 4.125 12 N -0.502 5.502 13 C 0.201 3.799 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.017 3.983 17 N -0.925 5.925 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.279 1.279 22 C 0.039 3.961 23 C -0.209 4.209 24 C -0.172 4.172 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.005 0.995 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -15.242 -9.294 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.082 0.918 5 C -0.217 4.217 6 N -0.367 5.367 7 C 0.308 3.692 8 O -0.438 6.438 9 C -0.040 4.040 10 H 0.084 0.916 11 C -0.183 4.183 12 N -0.225 5.225 13 C 0.075 3.925 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.182 4.182 17 N -0.565 5.565 18 Si 0.775 3.225 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.205 1.205 22 C -0.070 4.070 23 C -0.247 4.247 24 C -0.210 4.210 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.023 0.977 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.118 -14.623 -10.241 18.123 hybrid contribution 0.886 0.166 1.904 2.107 sum 4.004 -14.458 -8.336 17.163 Atomic orbital electron populations 1.21784 0.95557 1.02208 1.01610 1.21784 0.96253 0.93394 1.04363 1.21070 0.94983 0.94182 0.86316 0.91830 1.22143 0.95210 1.01148 1.03229 1.46012 1.70364 1.05889 1.14431 1.20714 0.75747 0.82857 0.89865 1.90632 1.50895 1.64788 1.37474 1.21443 0.99824 0.89340 0.93347 0.91605 1.21651 0.93996 1.01248 1.01398 1.62084 1.27726 1.02312 1.30358 1.19562 0.95370 0.92936 0.84658 1.21774 1.10106 1.31323 0.93558 0.92540 1.25655 0.96553 0.95078 1.00904 1.70066 1.29026 1.36171 1.21276 0.85645 0.79337 0.77962 0.79578 1.19069 1.21194 1.20483 1.22340 0.92279 0.90968 1.01451 1.23592 0.99235 1.05931 0.95979 1.22950 1.01823 0.99122 0.97116 0.93127 0.93684 0.91152 0.88950 0.89923 0.95025 0.91423 0.89947 0.75379 0.92583 0.92836 0.89323 0.97692 0.96344 0.92823 0.87897 0.88417 0.89290 0.87892 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.80 71.98 0.71 -1.59 16 2 C -0.12 -1.63 5.47 30.59 0.17 -1.46 16 3 C 0.14 2.88 2.57 44.99 0.12 3.00 16 4 H 0.06 1.64 7.58 -2.39 -0.02 1.63 16 5 C -0.16 -3.14 9.48 71.98 0.68 -2.46 16 6 N -0.71 -17.33 4.42 -442.55 -1.96 -19.29 16 7 C 0.52 17.84 6.55 87.65 0.57 18.42 16 8 O -0.56 -22.97 13.72 -3.02 -0.04 -23.01 16 9 C 0.07 2.75 2.11 44.17 0.09 2.84 16 10 H 0.07 2.65 6.26 -2.39 -0.01 2.63 16 11 C -0.13 -4.22 8.85 71.98 0.64 -3.59 16 12 N -0.50 -22.61 4.61 -854.83 -3.94 -26.55 16 13 C 0.20 10.29 4.15 85.56 0.36 10.65 16 14 C -0.53 -27.51 5.70 25.60 0.15 -27.37 16 15 H 0.06 2.93 6.30 -2.91 -0.02 2.91 16 16 C 0.02 0.93 5.46 84.66 0.46 1.40 16 17 N -0.93 -53.13 13.29 21.45 0.28 -52.85 16 18 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.04 1.70 4.60 44.91 0.21 1.90 16 23 C -0.21 -8.96 8.68 30.59 0.27 -8.69 16 24 C -0.17 -6.94 10.08 30.59 0.31 -6.63 16 25 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 26 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.41 7.88 8.01 -92.71 -0.74 7.13 16 34 H 0.06 2.22 6.52 -2.39 -0.02 2.20 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 2.21 7.55 -2.39 -0.02 2.19 16 37 H 0.01 0.29 6.35 -2.39 -0.02 0.27 16 38 H 0.02 1.02 6.59 -2.38 -0.02 1.01 16 39 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.10 4.45 5.97 -2.39 -0.01 4.44 16 41 H 0.10 4.89 4.91 -2.39 -0.01 4.88 16 42 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.08 3.20 8.04 -2.39 -0.02 3.18 16 Total: -1.00 -64.35 341.98 1.33 -63.02 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.23 Total: 27.91 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.72 Total: -13.59 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -5.61 Total: -98.69 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -64.35 1.33 -63.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.699 kcal (2) G-P(sol) polarization free energy of solvation -64.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds