Wall clock time and date at job start Mon Mar 30 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46540 * 2 1 4 4 C 1.53002 * 109.46869 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.47432 * 180.02562 * 4 3 2 6 6 C 1.34770 * 120.00276 * 179.97438 * 5 4 3 7 7 O 1.21278 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00018 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.46881 * 299.99574 * 8 6 5 10 10 C 1.52991 * 109.47217 * 59.99950 * 8 6 5 11 11 N 1.46896 * 109.46850 * 179.97438 * 8 6 5 12 12 C 1.46903 * 110.99882 * 179.97438 * 11 8 6 13 13 C 1.50703 * 109.47189 * 163.44103 * 12 11 8 14 14 H 1.07996 * 119.99826 * 4.64714 * 13 12 11 15 15 C 1.37877 * 119.99911 * 184.65402 * 13 12 11 16 16 N 1.31519 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00090 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47262 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47686 * 119.99484 * 17 15 13 20 20 H 1.48502 * 109.46935 * 239.99589 * 17 15 13 21 21 C 1.46898 * 111.00437 * 56.04818 * 11 8 6 22 22 C 1.52996 * 117.50370 * 126.43177 * 21 11 8 23 23 C 1.52997 * 117.49921 * 57.80601 * 21 11 8 24 24 H 1.09004 * 109.47398 * 299.99448 * 1 2 3 25 25 H 1.09000 * 109.47540 * 59.99974 * 1 2 3 26 26 H 1.09008 * 109.46824 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46987 * 240.00477 * 2 1 3 28 28 H 1.08994 * 109.47110 * 119.99976 * 2 1 3 29 29 H 1.08996 * 109.47581 * 60.00470 * 3 2 1 30 30 H 1.08994 * 109.47399 * 299.99799 * 3 2 1 31 31 H 1.08995 * 109.47645 * 60.00017 * 4 3 2 32 32 H 1.09007 * 109.46816 * 299.99601 * 4 3 2 33 33 H 0.97003 * 119.99165 * 359.71445 * 5 4 3 34 34 H 1.08998 * 109.47077 * 180.02562 * 10 8 6 35 35 H 1.09005 * 109.47010 * 299.99644 * 10 8 6 36 36 H 1.09001 * 109.47758 * 59.99635 * 10 8 6 37 37 H 1.08995 * 109.47471 * 283.44124 * 12 11 8 38 38 H 1.09001 * 109.46913 * 43.44348 * 12 11 8 39 39 H 0.97000 * 120.00106 * 180.02562 * 16 15 13 40 40 H 1.08998 * 115.54922 * 272.13919 * 21 11 8 41 41 H 1.09002 * 117.49765 * 359.97438 * 22 21 11 42 42 H 1.08996 * 117.50273 * 145.02519 * 22 21 11 43 43 H 1.09003 * 117.49966 * 214.97963 * 23 21 11 44 44 H 1.08998 * 117.50172 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5698 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 5.3832 3.0702 0.0001 7 8 6.1713 2.1485 0.0001 8 6 5.8855 4.4911 0.0001 9 1 5.5222 5.0049 -0.8900 10 6 5.3754 5.2123 1.2493 11 7 7.3544 4.4911 0.0009 12 6 7.8808 5.8626 0.0003 13 6 9.3321 5.8438 0.4060 14 1 9.8354 4.9020 0.5678 15 6 10.0173 7.0288 0.5707 16 7 9.4045 8.1757 0.3733 17 14 11.8163 7.0056 1.0728 18 1 12.2681 5.5998 1.2307 19 1 12.6312 7.6731 0.0262 20 1 11.9799 7.7253 2.3614 21 6 7.8815 3.7250 -1.1363 22 6 8.8876 4.4235 -2.0532 23 6 7.4605 4.1644 -2.5400 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9563 -0.8899 31 1 3.9329 0.9290 -0.8908 32 1 3.9336 0.9287 0.8892 33 1 3.4277 3.5611 -0.0035 34 1 5.7383 6.2401 1.2490 35 1 4.2853 5.2123 1.2491 36 1 5.7385 4.6985 2.1393 37 1 7.7886 6.2868 -0.9994 38 1 7.3141 6.4695 0.7064 39 1 9.8866 9.0094 0.4888 40 1 8.0157 2.6574 -0.9622 41 1 9.1581 5.4517 -1.8129 42 1 9.6839 3.8156 -2.4825 43 1 7.3180 3.3859 -3.2896 44 1 6.7920 5.0216 -2.6198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:57 Heat of formation + Delta-G solvation = -11.669225 kcal Electronic energy + Delta-G solvation = -21180.951845 eV Core-core repulsion = 18134.149333 eV Total energy + Delta-G solvation = -3046.802512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.80220 -37.78944 -36.11458 -33.94056 -33.44375 -32.64459 -29.83818 -28.54307 -26.83693 -24.41679 -22.98512 -22.13059 -21.52960 -21.39625 -19.94711 -18.75548 -16.74530 -16.26631 -16.04097 -15.87769 -15.61041 -14.69811 -14.56983 -14.06019 -13.88719 -13.71233 -13.54256 -12.96047 -12.60430 -12.24695 -12.17524 -12.05103 -11.72487 -11.44136 -11.41551 -11.33828 -11.24730 -10.97237 -10.89881 -10.72953 -10.69341 -10.16213 -9.93218 -9.70272 -9.42683 -9.18416 -8.91915 -8.78378 -8.39146 -7.16085 -6.00191 -3.98156 3.07354 3.32805 3.34280 3.42043 3.49165 4.45226 4.58680 4.63217 4.64853 4.76175 4.92044 5.11235 5.11883 5.31625 5.34901 5.40002 5.49436 5.53298 5.60293 5.65776 5.72782 5.81714 5.82668 5.87264 5.92130 5.97983 5.98751 6.03629 6.27006 6.30097 6.59105 6.62888 6.73862 6.92604 7.14613 7.23245 7.46023 7.68272 7.89026 8.11826 8.24888 8.53552 8.64836 9.10442 9.63840 11.10408 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036378 B = 0.003802 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.503979 B = 7362.426321 C = 7648.117288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.121 3.879 5 N -0.741 5.741 6 C 0.522 3.478 7 O -0.520 6.520 8 C 0.068 3.932 9 H 0.054 0.946 10 C -0.141 4.141 11 N -0.486 5.486 12 C 0.181 3.819 13 C -0.490 4.490 14 H 0.066 0.934 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.049 3.951 22 C -0.175 4.175 23 C -0.237 4.237 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.066 0.934 37 H -0.005 1.005 38 H 0.040 0.960 39 H 0.260 0.740 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.330 -10.403 -2.081 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.003 4.003 5 N -0.395 5.395 6 C 0.309 3.691 7 O -0.394 6.394 8 C -0.044 4.044 9 H 0.072 0.928 10 C -0.199 4.199 11 N -0.210 5.210 12 C 0.057 3.943 13 C -0.529 4.529 14 H 0.084 0.916 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.061 4.061 22 C -0.212 4.212 23 C -0.276 4.276 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.013 0.987 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.539 -11.129 -1.612 19.181 hybrid contribution 0.331 0.893 -0.575 1.112 sum -15.208 -10.236 -2.187 18.462 Atomic orbital electron populations 1.21768 0.95643 1.01679 1.01858 1.21434 0.95946 0.96115 1.02520 1.21827 0.94543 0.97852 1.02702 1.21276 0.93226 0.83670 1.02140 1.46059 1.07453 1.08245 1.77749 1.20800 0.81441 0.91913 0.74967 1.90629 1.54892 1.46371 1.47517 1.21499 0.92512 0.91469 0.98924 0.92801 1.21858 0.98875 1.02111 0.97057 1.62103 1.01506 1.17897 1.39493 1.20023 0.96107 0.82145 0.96029 1.21157 0.94588 0.92634 1.44486 0.91604 1.24956 0.98465 0.95424 0.95926 1.69961 1.36518 0.97240 1.50491 0.86467 0.85000 0.78165 0.78017 1.19576 1.21225 1.21158 1.22725 1.01615 0.98065 0.83671 1.23526 0.90879 1.04946 1.01821 1.23315 1.00479 1.03176 1.00639 0.92692 0.92721 0.92695 0.91706 0.91651 0.91297 0.91395 0.91918 0.91776 0.76957 0.90254 0.93030 0.91453 0.98705 0.94170 0.93079 0.86215 0.85062 0.90187 0.90328 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.13 -1.01 5.33 -26.73 -0.14 -1.15 16 4 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 5 N -0.74 -9.26 5.45 -60.29 -0.33 -9.59 16 6 C 0.52 8.96 6.87 -10.99 -0.08 8.88 16 7 O -0.52 -10.77 13.99 5.56 0.08 -10.70 16 8 C 0.07 1.23 2.22 -68.87 -0.15 1.08 16 9 H 0.05 0.95 7.15 -51.93 -0.37 0.58 16 10 C -0.14 -2.28 8.91 37.15 0.33 -1.95 16 11 N -0.49 -10.87 4.38 -221.54 -0.97 -11.84 16 12 C 0.18 4.58 4.13 -4.97 -0.02 4.56 16 13 C -0.49 -13.56 6.86 -34.44 -0.24 -13.80 16 14 H 0.07 1.88 7.79 -52.49 -0.41 1.48 16 15 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 16 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.05 1.04 4.62 -67.72 -0.31 0.73 16 22 C -0.17 -3.71 8.85 -26.73 -0.24 -3.94 16 23 C -0.24 -4.53 9.39 -26.73 -0.25 -4.79 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.92 -0.42 -0.12 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 3.89 7.90 -40.82 -0.32 3.57 16 34 H 0.08 1.41 6.09 -51.93 -0.32 1.09 16 35 H 0.05 0.62 7.57 -51.93 -0.39 0.23 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.00 -0.12 6.07 -51.93 -0.32 -0.44 16 38 H 0.04 1.06 5.61 -51.93 -0.29 0.77 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.12 2.69 6.71 -51.93 -0.35 2.34 16 41 H 0.13 3.20 4.92 -51.93 -0.26 2.95 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.08 1.55 7.18 -51.93 -0.37 1.17 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.21 345.12 -8.92 -40.12 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.60 Total: 4.75 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.01 Total: -9.26 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.56 Total: -46.86 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.21 -8.92 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.452 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds