Wall clock time and date at job start Mon Mar 30 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.53006 * 109.47166 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99958 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99847 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.47084 * 60.00390 * 8 6 5 10 10 C 1.52997 * 109.47292 * 300.00193 * 8 6 5 11 11 N 1.46903 * 109.46923 * 180.02562 * 8 6 5 12 12 C 1.46897 * 111.00206 * 180.02562 * 11 8 6 13 13 C 1.50696 * 109.47515 * 188.90307 * 12 11 8 14 14 H 1.08005 * 119.99505 * 5.09996 * 13 12 11 15 15 C 1.37877 * 120.00134 * 185.10391 * 13 12 11 16 16 N 1.31511 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47084 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47206 * 119.99818 * 17 15 13 20 20 H 1.48501 * 109.46711 * 240.00001 * 17 15 13 21 21 C 1.46900 * 111.00021 * 303.95350 * 11 8 6 22 22 C 1.52998 * 117.49985 * 352.19031 * 21 11 8 23 23 C 1.52994 * 60.00168 * 252.50804 * 22 21 11 24 24 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47295 * 300.00186 * 1 2 3 26 26 H 1.09006 * 109.47057 * 59.99891 * 1 2 3 27 27 H 1.09004 * 109.47073 * 240.00284 * 2 1 3 28 28 H 1.08996 * 109.47083 * 120.00094 * 2 1 3 29 29 H 1.09001 * 109.47252 * 59.99788 * 3 2 1 30 30 H 1.08996 * 109.47282 * 299.99971 * 3 2 1 31 31 H 1.09001 * 109.47218 * 59.99755 * 4 3 2 32 32 H 1.08996 * 109.46988 * 300.00141 * 4 3 2 33 33 H 0.97005 * 120.00172 * 0.02562 * 5 4 3 34 34 H 1.08997 * 109.47410 * 60.00234 * 10 8 6 35 35 H 1.09000 * 109.47021 * 180.02562 * 10 8 6 36 36 H 1.09001 * 109.46722 * 300.00147 * 10 8 6 37 37 H 1.09009 * 109.46964 * 308.90320 * 12 11 8 38 38 H 1.09000 * 109.47313 * 68.89727 * 12 11 8 39 39 H 0.97006 * 119.99645 * 180.02562 * 16 15 13 40 40 H 1.09003 * 115.55226 * 137.89211 * 21 11 8 41 41 H 1.09003 * 117.49727 * 359.97438 * 22 21 11 42 42 H 1.09003 * 117.50321 * 145.01875 * 22 21 11 43 43 H 1.08998 * 117.50313 * 252.50965 * 23 22 21 44 44 H 1.09004 * 117.50341 * 107.48730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3834 3.0701 -0.0014 7 8 6.1715 2.1483 -0.0005 8 6 5.8857 4.4909 -0.0014 9 1 5.5224 5.0047 0.8887 10 6 5.3755 5.2121 -1.2506 11 7 7.3547 4.4909 -0.0022 12 6 7.8812 5.8623 -0.0016 13 6 9.3715 5.8284 -0.2223 14 1 9.8651 4.8910 -0.4321 15 6 10.1049 6.9941 -0.1562 16 7 9.5037 8.1356 0.0988 17 14 11.9522 6.9521 -0.4305 18 1 12.3812 5.5560 -0.6986 19 1 12.2997 7.8090 -1.5924 20 1 12.6442 7.4579 0.7822 21 6 7.8817 3.7248 1.1351 22 6 6.8802 3.2401 2.1852 23 6 7.8383 4.3867 2.5138 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 3.4279 3.5611 -0.0008 34 1 4.2855 5.2122 -1.2505 35 1 5.7392 6.2397 -1.2508 36 1 5.7388 4.6983 -2.1406 37 1 7.4084 6.4333 -0.8009 38 1 7.6664 6.3336 0.9575 39 1 10.0197 8.9558 0.1449 40 1 8.7312 3.0787 0.9135 41 1 5.8303 3.4901 2.0326 42 1 7.0706 2.2750 2.6547 43 1 8.6592 4.1761 3.1993 44 1 7.4188 5.3908 2.5770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:00 Heat of formation + Delta-G solvation = -7.126631 kcal Electronic energy + Delta-G solvation = -21302.306361 eV Core-core repulsion = 18255.700831 eV Total energy + Delta-G solvation = -3046.605530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11699 -37.60717 -36.01465 -33.99549 -33.45806 -32.57985 -30.06173 -28.60432 -26.53755 -24.51256 -23.09613 -22.24449 -21.52930 -21.40900 -20.18939 -18.67262 -16.70044 -16.31048 -16.03522 -15.92629 -15.70926 -14.63352 -14.44896 -14.22164 -13.97032 -13.66674 -13.42727 -12.84064 -12.58756 -12.35838 -12.25203 -12.14771 -11.75376 -11.49369 -11.42012 -11.35404 -11.23335 -10.94811 -10.90166 -10.82181 -10.66796 -10.43772 -9.94463 -9.79552 -9.53863 -9.15171 -8.91541 -8.73505 -8.36288 -7.20380 -5.98746 -3.97607 3.07951 3.32322 3.34905 3.42251 3.48976 4.46767 4.58638 4.64625 4.64983 4.75383 4.82441 5.10691 5.11127 5.31098 5.37399 5.39922 5.47257 5.49335 5.53577 5.63081 5.64338 5.68657 5.72756 5.80187 5.85360 5.96641 5.98123 6.03254 6.17706 6.25596 6.53595 6.58586 6.61754 6.71945 7.02664 7.19746 7.39280 7.67907 7.86842 8.09228 8.21255 8.54807 8.65727 9.10464 9.65823 11.12457 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039509 B = 0.003817 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.525514 B = 7333.326796 C = 7590.811374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.743 5.743 6 C 0.521 3.479 7 O -0.512 6.512 8 C 0.062 3.938 9 H 0.053 0.947 10 C -0.141 4.141 11 N -0.489 5.489 12 C 0.189 3.811 13 C -0.495 4.495 14 H 0.064 0.936 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.286 1.286 21 C 0.084 3.916 22 C -0.198 4.198 23 C -0.209 4.209 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.002 0.998 39 H 0.259 0.741 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.969 -10.742 1.240 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.002 4.002 5 N -0.398 5.398 6 C 0.307 3.693 7 O -0.385 6.385 8 C -0.051 4.051 9 H 0.071 0.929 10 C -0.199 4.199 11 N -0.214 5.214 12 C 0.065 3.935 13 C -0.534 4.534 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.542 5.542 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.025 4.025 22 C -0.235 4.235 23 C -0.248 4.248 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.162 -11.469 0.801 19.834 hybrid contribution 0.376 0.909 0.730 1.225 sum -15.786 -10.560 1.530 19.054 Atomic orbital electron populations 1.21767 0.95650 1.01677 1.01853 1.21436 0.95939 0.96119 1.02518 1.21829 0.94575 0.97840 1.02680 1.21261 0.93175 0.83644 1.02133 1.46072 1.07424 1.08227 1.78062 1.20629 0.81530 0.91952 0.75150 1.90685 1.54817 1.46012 1.46970 1.21586 0.92925 0.91645 0.98912 0.92944 1.21838 0.98949 1.02007 0.97057 1.62148 1.01411 1.18127 1.39675 1.19950 0.95746 0.81498 0.96307 1.21124 0.91741 0.93862 1.46664 0.91815 1.24943 0.98611 0.95427 0.95619 1.69960 1.35642 0.98319 1.50292 0.86462 0.85424 0.78123 0.77572 1.19634 1.21130 1.21220 1.22304 0.98400 0.98143 0.83667 1.23293 0.95780 0.98481 1.05978 1.23348 1.02010 0.96978 1.02436 0.92695 0.92722 0.92700 0.91658 0.91703 0.91404 0.91328 0.91814 0.91911 0.77034 0.92983 0.90389 0.91460 0.94765 0.98061 0.93115 0.86950 0.90353 0.89623 0.89451 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.85 5.93 -26.73 -0.16 -1.01 16 3 C -0.13 -1.00 5.33 -26.73 -0.14 -1.14 16 4 C 0.12 1.32 5.67 -4.04 -0.02 1.29 16 5 N -0.74 -9.17 5.45 -60.29 -0.33 -9.49 16 6 C 0.52 8.80 4.83 -10.98 -0.05 8.74 16 7 O -0.51 -10.44 13.72 5.56 0.08 -10.37 16 8 C 0.06 1.11 1.94 -68.86 -0.13 0.98 16 9 H 0.05 0.93 7.23 -51.93 -0.38 0.55 16 10 C -0.14 -2.24 8.88 37.16 0.33 -1.91 16 11 N -0.49 -10.95 4.45 -221.53 -0.99 -11.94 16 12 C 0.19 4.84 4.30 -4.98 -0.02 4.82 16 13 C -0.50 -13.99 8.67 -34.44 -0.30 -14.29 16 14 H 0.06 1.84 7.72 -52.48 -0.41 1.43 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 C 0.08 1.82 4.31 -67.71 -0.29 1.52 16 22 C -0.20 -3.65 7.54 -26.73 -0.20 -3.85 16 23 C -0.21 -4.17 9.64 -26.73 -0.26 -4.43 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.85 7.89 -40.82 -0.32 3.53 16 34 H 0.05 0.62 7.56 -51.93 -0.39 0.22 16 35 H 0.08 1.35 6.22 -51.93 -0.32 1.03 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.91 5.87 -51.92 -0.30 0.60 16 38 H 0.00 0.05 6.30 -51.93 -0.33 -0.28 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.11 2.55 8.14 -51.93 -0.42 2.13 16 41 H 0.08 1.38 4.94 -51.93 -0.26 1.13 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.09 1.92 6.73 -51.93 -0.35 1.57 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -31.77 344.78 -8.99 -40.77 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.69 Total: 3.07 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.98 Total: -8.37 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.58 Total: -47.25 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.77 -8.99 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.641 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds