Wall clock time and date at job start Mon Mar 30 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46994 * 2 1 4 4 C 1.53006 * 109.47166 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99958 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99693 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99847 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.47084 * 60.00390 * 8 6 5 10 10 C 1.52997 * 109.47292 * 300.00193 * 8 6 5 11 11 N 1.46903 * 109.46923 * 180.02562 * 8 6 5 12 12 C 1.46897 * 111.00206 * 180.02562 * 11 8 6 13 13 C 1.50696 * 109.47515 * 188.90307 * 12 11 8 14 14 H 1.08005 * 119.99505 * 5.09996 * 13 12 11 15 15 C 1.37877 * 120.00134 * 185.10391 * 13 12 11 16 16 N 1.31511 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99813 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47084 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47206 * 119.99818 * 17 15 13 20 20 H 1.48501 * 109.46711 * 240.00001 * 17 15 13 21 21 C 1.46900 * 111.00021 * 303.95350 * 11 8 6 22 22 C 1.52998 * 117.49985 * 352.19031 * 21 11 8 23 23 C 1.52994 * 60.00168 * 252.50804 * 22 21 11 24 24 H 1.08999 * 109.46913 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47295 * 300.00186 * 1 2 3 26 26 H 1.09006 * 109.47057 * 59.99891 * 1 2 3 27 27 H 1.09004 * 109.47073 * 240.00284 * 2 1 3 28 28 H 1.08996 * 109.47083 * 120.00094 * 2 1 3 29 29 H 1.09001 * 109.47252 * 59.99788 * 3 2 1 30 30 H 1.08996 * 109.47282 * 299.99971 * 3 2 1 31 31 H 1.09001 * 109.47218 * 59.99755 * 4 3 2 32 32 H 1.08996 * 109.46988 * 300.00141 * 4 3 2 33 33 H 0.97005 * 120.00172 * 0.02562 * 5 4 3 34 34 H 1.08997 * 109.47410 * 60.00234 * 10 8 6 35 35 H 1.09000 * 109.47021 * 180.02562 * 10 8 6 36 36 H 1.09001 * 109.46722 * 300.00147 * 10 8 6 37 37 H 1.09009 * 109.46964 * 308.90320 * 12 11 8 38 38 H 1.09000 * 109.47313 * 68.89727 * 12 11 8 39 39 H 0.97006 * 119.99645 * 180.02562 * 16 15 13 40 40 H 1.09003 * 115.55226 * 137.89211 * 21 11 8 41 41 H 1.09003 * 117.49727 * 359.97438 * 22 21 11 42 42 H 1.09003 * 117.50321 * 145.01875 * 22 21 11 43 43 H 1.08998 * 117.50313 * 252.50965 * 23 22 21 44 44 H 1.09004 * 117.50341 * 107.48730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 5.3834 3.0701 -0.0014 7 8 6.1715 2.1483 -0.0005 8 6 5.8857 4.4909 -0.0014 9 1 5.5224 5.0047 0.8887 10 6 5.3755 5.2121 -1.2506 11 7 7.3547 4.4909 -0.0022 12 6 7.8812 5.8623 -0.0016 13 6 9.3715 5.8284 -0.2223 14 1 9.8651 4.8910 -0.4321 15 6 10.1049 6.9941 -0.1562 16 7 9.5037 8.1356 0.0988 17 14 11.9522 6.9521 -0.4305 18 1 12.3812 5.5560 -0.6986 19 1 12.2997 7.8090 -1.5924 20 1 12.6442 7.4579 0.7822 21 6 7.8817 3.7248 1.1351 22 6 6.8802 3.2401 2.1852 23 6 7.8383 4.3867 2.5138 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9286 0.8891 33 1 3.4279 3.5611 -0.0008 34 1 4.2855 5.2122 -1.2505 35 1 5.7392 6.2397 -1.2508 36 1 5.7388 4.6983 -2.1406 37 1 7.4084 6.4333 -0.8009 38 1 7.6664 6.3336 0.9575 39 1 10.0197 8.9558 0.1449 40 1 8.7312 3.0787 0.9135 41 1 5.8303 3.4901 2.0326 42 1 7.0706 2.2750 2.6547 43 1 8.6592 4.1761 3.1993 44 1 7.4188 5.3908 2.5770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:00 Heat of formation + Delta-G solvation = -28.498120 kcal Electronic energy + Delta-G solvation = -21303.233098 eV Core-core repulsion = 18255.700831 eV Total energy + Delta-G solvation = -3047.532267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55234 -39.03786 -36.95043 -35.55598 -34.80585 -34.31281 -31.61011 -29.55424 -28.39843 -25.89487 -24.41296 -23.80772 -22.94988 -22.22339 -21.59751 -20.17530 -18.46188 -17.83427 -17.67857 -17.03752 -16.72955 -16.49957 -15.89331 -15.53907 -15.21832 -14.69053 -14.43851 -14.26823 -14.17032 -13.93504 -13.67064 -13.22325 -13.01235 -12.83852 -12.71326 -12.67229 -12.50160 -12.37515 -12.12662 -12.04004 -11.97014 -11.94807 -11.50420 -11.45471 -11.20335 -11.03044 -10.57812 -10.31157 -9.97331 -8.96055 -8.16942 -6.23283 1.40115 1.41312 1.54630 1.73256 2.16865 2.43760 3.02249 3.16855 3.20820 3.84928 3.92730 3.96121 3.99466 4.05756 4.10802 4.17409 4.23304 4.26585 4.48703 4.64177 4.67994 4.71754 4.73092 4.85640 4.92931 4.95869 4.98260 5.10562 5.14767 5.20711 5.21602 5.27481 5.29424 5.39296 5.42221 5.48178 5.55747 5.69381 6.07931 6.35171 6.51250 6.72943 6.90950 7.38170 7.44732 8.93927 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039509 B = 0.003817 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.525514 B = 7333.326796 C = 7590.811374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.122 3.878 5 N -0.722 5.722 6 C 0.525 3.475 7 O -0.552 6.552 8 C 0.056 3.944 9 H 0.061 0.939 10 C -0.135 4.135 11 N -0.504 5.504 12 C 0.208 3.792 13 C -0.512 4.512 14 H 0.050 0.950 15 C 0.008 3.992 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.056 3.944 22 C -0.162 4.162 23 C -0.208 4.208 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.412 0.588 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.022 0.978 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 -11.326 1.459 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.002 4.002 5 N -0.376 5.376 6 C 0.311 3.689 7 O -0.428 6.428 8 C -0.056 4.056 9 H 0.078 0.922 10 C -0.192 4.192 11 N -0.228 5.228 12 C 0.083 3.917 13 C -0.551 4.551 14 H 0.068 0.932 15 C -0.190 4.190 16 N -0.571 5.571 17 Si 0.786 3.214 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.053 4.053 22 C -0.200 4.200 23 C -0.247 4.247 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.249 0.751 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.040 0.960 38 H -0.003 1.003 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.773 -12.052 1.020 21.498 hybrid contribution 0.785 1.050 0.650 1.463 sum -16.989 -11.002 1.670 20.309 Atomic orbital electron populations 1.21751 0.94740 1.02099 1.02196 1.21441 0.96677 0.95596 1.02371 1.21767 0.91782 0.98566 1.03704 1.21378 0.95381 0.82186 1.01229 1.45886 1.06019 1.09755 1.75956 1.20349 0.82741 0.90698 0.75091 1.90678 1.56204 1.46690 1.49256 1.21728 0.90409 0.93263 1.00215 0.92175 1.21814 1.01798 1.00177 0.95449 1.61932 1.04330 1.15957 1.40601 1.19564 0.94541 0.83195 0.94442 1.21354 0.93381 0.93448 1.46912 0.93191 1.25717 1.03061 0.95014 0.95223 1.70053 1.37349 0.98873 1.50865 0.85469 0.80044 0.78106 0.77818 1.19549 1.20256 1.20430 1.22211 0.99660 0.99152 0.84307 1.23247 0.95602 0.98256 1.02848 1.23297 1.03001 0.96872 1.01517 0.92323 0.92357 0.92362 0.91921 0.91883 0.90323 0.90300 0.92921 0.92728 0.75100 0.88328 0.92308 0.92651 0.96047 1.00262 0.92782 0.89010 0.89227 0.88233 0.88525 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.43 5.93 30.59 0.18 -1.25 16 3 C -0.12 -1.48 5.33 30.60 0.16 -1.32 16 4 C 0.12 2.38 5.67 86.38 0.49 2.87 16 5 N -0.72 -16.04 5.45 -463.06 -2.52 -18.56 16 6 C 0.53 17.06 4.83 87.66 0.42 17.49 16 7 O -0.55 -22.29 13.72 -3.01 -0.04 -22.33 16 8 C 0.06 1.98 1.94 44.17 0.09 2.07 16 9 H 0.06 2.06 7.23 -2.38 -0.02 2.04 16 10 C -0.13 -4.16 8.88 71.98 0.64 -3.52 16 11 N -0.50 -23.03 4.45 -854.77 -3.81 -26.84 16 12 C 0.21 10.96 4.30 85.56 0.37 11.33 16 13 C -0.51 -29.71 8.67 25.60 0.22 -29.49 16 14 H 0.05 2.97 7.72 -2.91 -0.02 2.95 16 15 C 0.01 0.44 5.46 84.66 0.46 0.91 16 16 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 17 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 C 0.06 2.46 4.31 44.91 0.19 2.65 16 22 C -0.16 -5.83 7.54 30.59 0.23 -5.60 16 23 C -0.21 -8.35 9.64 30.59 0.30 -8.05 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 6.56 7.89 -92.70 -0.73 5.83 16 34 H 0.10 2.06 7.56 -2.39 -0.02 2.04 16 35 H 0.06 2.05 6.22 -2.39 -0.01 2.03 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.02 1.18 5.87 -2.38 -0.01 1.17 16 38 H -0.02 -1.14 6.30 -2.39 -0.02 -1.15 16 39 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 41 H 0.09 3.01 4.94 -2.39 -0.01 2.99 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 44 H 0.08 3.28 6.73 -2.38 -0.02 3.27 16 Total: -1.00 -69.55 344.78 0.64 -68.91 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.24 Total: 19.14 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.47 Total: -12.65 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.04 Total: -100.56 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.55 0.64 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.410 kcal (2) G-P(sol) polarization free energy of solvation -69.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds