Wall clock time and date at job start Mon Mar 30 2020 05:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 C 1.53007 * 109.47288 * 120.00381 * 2 1 3 5 5 N 1.46898 * 109.47001 * 176.45147 * 4 2 1 6 6 C 1.46899 * 110.99905 * 163.89673 * 5 4 2 7 7 C 1.50696 * 109.47184 * 287.15668 * 6 5 4 8 8 H 1.08005 * 120.00048 * 4.94253 * 7 6 5 9 9 C 1.37878 * 119.99905 * 184.93344 * 7 6 5 10 10 N 1.31520 * 119.99606 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00136 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47171 * 89.99649 * 11 9 7 13 13 H 1.48498 * 109.47011 * 209.99424 * 11 9 7 14 14 H 1.48503 * 109.47197 * 329.99870 * 11 9 7 15 15 C 1.46908 * 110.99859 * 287.85051 * 5 4 2 16 16 H 1.08997 * 109.62714 * 57.63528 * 15 5 4 17 17 C 1.53060 * 109.63309 * 178.03692 * 15 5 4 18 18 C 1.51564 * 110.87030 * 204.40885 * 17 15 5 19 19 C 1.51777 * 113.97689 * 293.51704 * 18 17 15 20 20 C 1.52985 * 110.88077 * 66.87546 * 19 18 17 21 21 N 1.47192 * 108.66923 * 273.53993 * 20 19 18 22 22 C 1.33369 * 120.43089 * 71.94498 * 21 20 19 23 23 O 1.21277 * 119.89151 * 179.72249 * 22 21 20 24 24 H 1.09004 * 109.46682 * 299.99758 * 1 2 3 25 25 H 1.08997 * 109.47314 * 59.99517 * 1 2 3 26 26 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46444 * 239.99745 * 2 1 3 28 28 H 1.09002 * 109.47121 * 185.01747 * 3 2 1 29 29 H 1.09004 * 109.47133 * 305.01763 * 3 2 1 30 30 H 1.09003 * 109.46984 * 65.01039 * 3 2 1 31 31 H 1.09000 * 109.46996 * 56.44655 * 4 2 1 32 32 H 1.08993 * 109.46884 * 296.45098 * 4 2 1 33 33 H 1.09008 * 109.47097 * 47.15893 * 6 5 4 34 34 H 1.09001 * 109.47166 * 167.15859 * 6 5 4 35 35 H 0.96997 * 119.99417 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.21717 * 324.94720 * 17 15 5 37 37 H 1.09003 * 109.22110 * 84.29296 * 17 15 5 38 38 H 1.09000 * 108.62199 * 172.28394 * 18 17 15 39 39 H 1.08994 * 108.43613 * 54.61528 * 18 17 15 40 40 H 1.09011 * 109.19421 * 306.51661 * 19 18 17 41 41 H 1.08997 * 109.19718 * 187.24162 * 19 18 17 42 42 H 1.09004 * 109.60195 * 153.78778 * 20 19 18 43 43 H 1.09003 * 109.60401 * 33.29913 * 20 19 18 44 44 H 0.97003 * 119.78410 * 251.97486 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 7 3.5066 -0.7960 1.2071 6 6 4.0551 -1.1252 2.5294 7 6 3.9305 0.0712 3.4371 8 1 3.4169 0.9575 3.0948 9 6 4.4720 0.0344 4.7045 10 7 4.3628 1.0785 5.4968 11 14 5.3608 -1.4983 5.2963 12 1 6.8021 -1.3985 4.9526 13 1 5.2104 -1.6202 6.7686 14 1 4.7766 -2.6944 4.6382 15 6 3.9556 -1.7619 0.1954 16 1 3.5594 -1.4810 -0.7804 17 6 5.4853 -1.7790 0.1439 18 6 5.9747 -2.2589 -1.2079 19 6 5.6511 -3.7126 -1.5005 20 6 4.1421 -3.9164 -1.6479 21 7 3.5654 -4.1479 -0.3136 22 6 3.4678 -3.1475 0.5630 23 8 2.9864 -3.3481 1.6579 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 3.1264 1.4437 -0.0899 29 1 1.6052 1.9816 -0.8417 30 1 1.7519 1.9297 0.9315 31 1 1.6257 -1.7290 1.2816 32 1 1.7296 -0.1722 2.1380 33 1 3.5016 -1.9628 2.9542 34 1 5.1058 -1.3975 2.4294 35 1 4.7441 1.0527 6.3883 36 1 5.8617 -0.7726 0.3275 37 1 5.8629 -2.4491 0.9162 38 1 7.0557 -2.1270 -1.2536 39 1 5.5187 -1.6388 -1.9796 40 1 6.0184 -4.3331 -0.6829 41 1 6.1451 -4.0106 -2.4253 42 1 3.9502 -4.7803 -2.2842 43 1 3.6944 -3.0265 -2.0905 44 1 3.2547 -5.0340 -0.0701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:24 Heat of formation + Delta-G solvation = -66.497928 kcal Electronic energy + Delta-G solvation = -22628.834708 eV Core-core repulsion = 19579.654645 eV Total energy + Delta-G solvation = -3049.180063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76270 -38.41052 -37.70494 -35.79898 -34.73017 -33.71517 -31.35002 -29.62656 -27.88218 -27.18735 -25.59543 -24.88556 -22.89885 -21.52151 -21.16546 -19.68269 -19.05930 -18.16626 -17.82967 -16.77383 -16.37679 -16.13800 -15.62598 -15.29715 -15.12577 -14.90663 -14.76376 -14.42714 -14.26274 -14.06598 -13.69154 -13.32174 -13.10373 -12.95867 -12.87231 -12.69395 -12.42323 -12.24054 -11.98707 -11.88962 -11.74517 -11.69217 -11.58156 -11.51913 -11.26355 -11.17693 -11.06899 -10.74872 -10.01140 -8.86156 -8.28373 -6.26182 1.24291 1.28454 1.43027 1.66300 2.32275 2.41833 3.04038 3.15352 3.59960 3.82741 3.91381 3.97977 4.14124 4.17455 4.29382 4.33312 4.45723 4.51672 4.64650 4.72100 4.82547 4.83993 4.88900 4.91572 5.05415 5.09878 5.12448 5.16542 5.17098 5.24958 5.25829 5.31174 5.38629 5.48259 5.52157 5.60475 5.64676 5.94379 6.01107 6.26865 6.37991 6.65084 6.77833 7.33696 7.35456 8.88630 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.008561 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.933898 B = 3269.799146 C = 4363.157636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.127 4.127 4 C 0.065 3.935 5 N -0.502 5.502 6 C 0.167 3.833 7 C -0.503 4.503 8 H 0.041 0.959 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.935 3.065 12 H -0.260 1.260 13 H -0.279 1.279 14 H -0.271 1.271 15 C 0.068 3.932 16 H 0.128 0.872 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.139 4.139 20 C 0.102 3.898 21 N -0.718 5.718 22 C 0.479 3.521 23 O -0.591 6.591 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.003 0.997 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.087 0.913 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -10.291 -21.960 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.184 4.184 4 C -0.063 4.063 5 N -0.223 5.223 6 C 0.040 3.960 7 C -0.541 4.541 8 H 0.060 0.940 9 C -0.185 4.185 10 N -0.589 5.589 11 Si 0.759 3.241 12 H -0.184 1.184 13 H -0.205 1.205 14 H -0.196 1.196 15 C -0.045 4.045 16 H 0.145 0.855 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.177 4.177 20 C -0.021 4.021 21 N -0.369 5.369 22 C 0.265 3.735 23 O -0.472 6.472 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.105 0.895 44 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.273 -9.649 -21.422 23.496 hybrid contribution -0.058 -1.474 1.792 2.321 sum 0.215 -11.123 -19.630 22.563 Atomic orbital electron populations 1.21779 0.94258 1.01583 1.02214 1.21098 0.95833 0.96699 0.96472 1.21603 1.01306 0.95165 1.00342 1.22124 0.87551 0.98030 0.98631 1.62388 1.09137 1.44198 1.06583 1.20025 0.94190 0.94622 0.87129 1.21342 1.34470 1.00372 0.97936 0.94028 1.25645 0.97234 0.98774 0.96854 1.70034 1.48182 1.31529 1.09163 0.85895 0.79866 0.80701 0.77605 1.18448 1.20469 1.19596 1.22334 0.97656 0.85994 0.98471 0.85486 1.21303 0.91776 1.02166 0.99197 1.21101 1.02209 0.97049 0.94863 1.21848 0.96218 0.96117 1.03484 1.22145 0.93105 1.04788 0.82044 1.46219 1.62711 1.11711 1.16302 1.22402 0.77361 0.89627 0.84115 1.90738 1.47321 1.84807 1.24300 0.93974 0.90153 0.92976 0.90125 0.92916 0.91152 0.95621 0.95763 0.94137 0.97955 0.96383 0.92610 0.90742 0.94794 0.90543 0.89564 0.93062 0.87228 0.86150 0.89475 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.19 71.98 0.66 -3.05 16 2 C -0.08 -2.54 2.92 -10.79 -0.03 -2.57 16 3 C -0.13 -4.04 9.00 71.98 0.65 -3.39 16 4 C 0.06 2.71 3.92 86.31 0.34 3.05 16 5 N -0.50 -21.67 3.86 -878.42 -3.39 -25.06 16 6 C 0.17 8.94 2.91 85.56 0.25 9.19 16 7 C -0.50 -31.25 9.03 25.60 0.23 -31.02 16 8 H 0.04 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.01 0.73 5.47 84.65 0.46 1.19 16 10 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 11 Si 0.93 49.00 27.37 68.60 1.88 50.88 16 12 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 14 H -0.27 -14.50 6.69 99.48 0.67 -13.83 16 15 C 0.07 2.22 1.83 44.42 0.08 2.30 16 16 H 0.13 3.26 5.23 -2.39 -0.01 3.25 16 17 C -0.11 -3.14 3.93 30.14 0.12 -3.02 16 18 C -0.11 -2.01 5.26 29.72 0.16 -1.85 16 19 C -0.14 -1.84 5.74 30.19 0.17 -1.67 16 20 C 0.10 1.28 6.46 86.24 0.56 1.84 16 21 N -0.72 -16.28 5.27 -462.61 -2.44 -18.72 16 22 C 0.48 16.43 6.10 88.11 0.54 16.96 16 23 O -0.59 -27.22 12.90 -3.02 -0.04 -27.26 16 24 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 2.09 6.61 -2.39 -0.02 2.07 16 28 H 0.05 1.81 7.85 -2.39 -0.02 1.79 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.02 1.06 5.87 -2.39 -0.01 1.05 16 32 H 0.04 2.03 7.04 -2.39 -0.02 2.01 16 33 H 0.00 0.16 5.10 -2.38 -0.01 0.15 16 34 H 0.02 0.96 5.26 -2.39 -0.01 0.95 16 35 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 36 H 0.07 2.46 8.08 -2.39 -0.02 2.44 16 37 H 0.03 1.16 7.14 -2.39 -0.02 1.14 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.18 7.89 -2.39 -0.02 1.16 16 40 H 0.05 0.90 8.05 -2.38 -0.02 0.88 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.09 0.96 6.71 -2.39 -0.02 0.95 16 44 H 0.40 8.28 8.91 -92.71 -0.83 7.46 16 Total: -1.00 -81.11 327.01 0.60 -80.51 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.11 Total: 13.72 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 4.18 Total: -12.04 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -5.53 Total: -105.80 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.04 Total: -27.26 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.88 Total: 50.88 kcal Total: -81.11 0.60 -80.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.011 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds