Wall clock time and date at job start Mon Mar 30 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.53006 * 109.47164 * 184.99623 * 3 2 1 6 6 N 1.46500 * 109.47204 * 64.99698 * 3 2 1 7 7 C 1.34770 * 119.99955 * 204.99611 * 6 3 2 8 8 O 1.21279 * 120.00155 * 0.02562 * 7 6 3 9 9 C 1.50699 * 119.99961 * 180.02562 * 7 6 3 10 10 C 1.53124 * 109.52478 * 299.87187 * 9 7 6 11 11 C 1.53045 * 109.27786 * 182.50153 * 10 9 7 12 12 N 1.46845 * 109.57115 * 59.09039 * 11 10 9 13 13 C 1.46904 * 111.00015 * 174.19472 * 12 11 10 14 14 C 1.50707 * 109.46672 * 294.20617 * 13 12 11 15 15 H 1.08001 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99771 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99747 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99891 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47193 * 90.00182 * 18 16 14 20 20 H 1.48504 * 109.46710 * 209.99676 * 18 16 14 21 21 H 1.48491 * 109.47456 * 329.99675 * 18 16 14 22 22 C 1.46851 * 111.20002 * 298.28797 * 12 11 10 23 23 C 1.53032 * 109.52325 * 61.73956 * 22 12 11 24 24 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 25 25 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 27 27 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 28 28 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 29 29 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 30 30 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 32 32 H 0.96997 * 120.00110 * 25.00389 * 6 3 2 33 33 H 1.08998 * 109.52807 * 60.00258 * 9 7 6 34 34 H 1.08995 * 109.50188 * 302.38677 * 10 9 7 35 35 H 1.09008 * 109.49720 * 62.50462 * 10 9 7 36 36 H 1.09000 * 109.41237 * 299.07321 * 11 10 9 37 37 H 1.08993 * 109.45287 * 179.13222 * 11 10 9 38 38 H 1.08997 * 109.47399 * 54.20315 * 13 12 11 39 39 H 1.08998 * 109.47408 * 174.21232 * 13 12 11 40 40 H 0.97003 * 119.99845 * 180.02562 * 17 16 14 41 41 H 1.09010 * 109.46112 * 301.73002 * 22 12 11 42 42 H 1.08999 * 109.45663 * 181.75928 * 22 12 11 43 43 H 1.08998 * 109.50444 * 180.87816 * 23 22 12 44 44 H 1.09004 * 109.50095 * 60.76372 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 7 1.6522 2.0975 1.2518 7 6 1.5255 3.4384 1.2995 8 8 1.7318 4.1028 0.3061 9 6 1.1273 4.1122 2.5873 10 6 -0.2452 3.5981 3.0308 11 6 -0.6719 4.3312 4.3047 12 7 -0.7293 5.7754 4.0454 13 6 -1.2676 6.4976 5.2059 14 6 -2.7082 6.1081 5.4159 15 1 -3.1768 5.3950 4.7538 16 6 -3.4276 6.6612 6.4539 17 7 -4.6846 6.3209 6.6375 18 14 -2.6168 7.8940 7.5995 19 1 -2.8074 9.2662 7.0648 20 1 -3.2336 7.7976 8.9469 21 1 -1.1649 7.5982 7.6974 22 6 0.5887 6.2994 3.6646 23 6 1.0523 5.6262 2.3708 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8532 0.9570 -1.0570 30 1 3.9281 2.4720 -0.1252 31 1 3.9994 0.9054 0.7162 32 1 1.4869 1.5661 2.0462 33 1 1.8656 3.8906 3.3579 34 1 -0.9753 3.7841 2.2431 35 1 -0.1865 2.5277 3.2281 36 1 0.0508 4.1327 5.0962 37 1 -1.6556 3.9784 4.6143 38 1 -0.6889 6.2418 6.0935 39 1 -1.2038 7.5710 5.0274 40 1 -5.1908 6.7103 7.3676 41 1 1.3055 6.0916 4.4591 42 1 0.5203 7.3761 3.5096 43 1 2.0373 6.0039 2.0968 44 1 0.3431 5.8449 1.5725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049753860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:26 Heat of formation + Delta-G solvation = -57.651860 kcal Electronic energy + Delta-G solvation = -21154.429038 eV Core-core repulsion = 18105.632570 eV Total energy + Delta-G solvation = -3048.796468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.21293 -38.04682 -36.48859 -33.74272 -32.52337 -31.84442 -30.44443 -29.89791 -27.76289 -24.80259 -23.82440 -22.68049 -21.64431 -20.86067 -20.31599 -19.26312 -17.10067 -16.78433 -16.42935 -15.41589 -14.76454 -14.42118 -14.33971 -14.22344 -14.11786 -13.68956 -13.65109 -13.43559 -12.90280 -12.83968 -12.45702 -12.25060 -12.00918 -11.96557 -11.64787 -11.54869 -11.34252 -11.15820 -10.96288 -10.79922 -10.66636 -10.49475 -10.19283 -10.14181 -9.84522 -9.49017 -9.23573 -9.13495 -8.56783 -7.35039 -6.05403 -4.02669 2.71841 3.14356 3.28634 3.35978 3.37839 4.41941 4.42699 4.70209 4.74248 4.78917 4.81745 5.01247 5.10700 5.16500 5.27119 5.30409 5.35968 5.45582 5.50453 5.61981 5.64727 5.68508 5.77809 5.86641 5.91796 5.95378 5.97587 6.03830 6.05340 6.14892 6.35668 6.43495 6.48709 6.60643 6.66543 6.87602 7.00158 7.47231 7.60512 7.92105 8.07725 8.27117 8.66286 9.02918 9.56554 11.07651 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.003832 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.515906 B = 7305.457231 C = 7880.838353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.087 0.913 5 C -0.163 4.163 6 N -0.728 5.728 7 C 0.523 3.477 8 O -0.541 6.541 9 C -0.107 4.107 10 C -0.105 4.105 11 C 0.066 3.934 12 N -0.528 5.528 13 C 0.162 3.838 14 C -0.509 4.509 15 H 0.081 0.919 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.052 3.948 23 C -0.092 4.092 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.093 0.907 38 H -0.012 1.012 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.021 0.979 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.132 -12.155 -10.046 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C 0.034 3.966 4 H 0.105 0.895 5 C -0.222 4.222 6 N -0.381 5.381 7 C 0.310 3.690 8 O -0.417 6.417 9 C -0.128 4.128 10 C -0.143 4.143 11 C -0.063 4.063 12 N -0.252 5.252 13 C 0.035 3.965 14 C -0.547 4.547 15 H 0.099 0.901 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.076 4.076 23 C -0.130 4.130 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.233 0.767 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.111 0.889 38 H 0.006 0.994 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.803 -11.558 -11.049 21.790 hybrid contribution 0.826 0.269 1.804 2.003 sum 15.629 -11.289 -9.245 21.381 Atomic orbital electron populations 1.21784 0.95077 1.01719 1.02616 1.21827 0.96782 0.95389 1.02822 1.20976 0.94675 0.93031 0.87913 0.89508 1.22180 0.95645 1.02583 1.01751 1.46142 1.71287 1.07253 1.13395 1.20843 0.75636 0.81861 0.90688 1.90668 1.49994 1.64153 1.36924 1.21444 0.99384 0.97559 0.94461 1.21627 0.94491 0.98477 0.99689 1.21948 1.01770 0.88807 0.93735 1.61850 1.21175 1.02798 1.39385 1.20165 0.96172 0.93828 0.86286 1.21044 0.93760 1.26440 1.13490 0.90109 1.24901 0.94709 0.96453 0.97287 1.69895 1.08339 1.44112 1.31619 0.86866 0.80026 0.82302 0.80581 1.20137 1.21248 1.19312 1.22093 0.90758 0.99438 0.95342 1.21380 1.01521 0.91591 0.98499 0.92548 0.92587 0.92210 0.90616 0.91488 0.91842 0.92069 0.92598 0.76658 0.89249 0.90664 0.91967 0.96114 0.88893 0.99435 0.95731 0.92682 0.96071 0.91001 0.91749 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.80 37.16 0.36 -0.82 16 2 C -0.13 -0.89 5.47 -26.73 -0.15 -1.03 16 3 C 0.14 1.27 2.57 -67.93 -0.17 1.09 16 4 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 5 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 6 N -0.73 -7.28 4.43 -53.81 -0.24 -7.52 16 7 C 0.52 7.01 7.12 -10.99 -0.08 6.93 16 8 O -0.54 -9.16 15.64 5.56 0.09 -9.08 16 9 C -0.11 -1.44 2.59 -91.65 -0.24 -1.67 16 10 C -0.10 -1.49 5.26 -26.64 -0.14 -1.63 16 11 C 0.07 1.19 5.29 -3.83 -0.02 1.17 16 12 N -0.53 -10.92 4.65 -236.10 -1.10 -12.01 16 13 C 0.16 3.90 3.79 -4.97 -0.02 3.89 16 14 C -0.51 -14.33 8.98 -34.44 -0.31 -14.64 16 15 H 0.08 2.46 7.36 -52.49 -0.39 2.08 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 18 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C 0.05 0.90 5.46 -3.83 -0.02 0.88 16 23 C -0.09 -1.41 4.68 -26.65 -0.12 -1.53 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.40 3.15 8.08 -40.82 -0.33 2.82 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.70 7.65 -51.92 -0.40 0.30 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 1.91 6.70 -51.93 -0.35 1.56 16 38 H -0.01 -0.29 7.18 -51.93 -0.37 -0.67 16 39 H 0.02 0.60 7.42 -51.93 -0.39 0.21 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -32.01 344.67 -8.69 -40.70 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.09 Total: -0.86 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.65 Total: -6.53 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.56 Total: -46.18 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.01 -8.69 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049753860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.949 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds