Wall clock time and date at job start Mon Mar 30 2020 05:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47558 * 2 1 4 4 C 1.53003 * 109.46966 * 239.99886 * 2 1 3 5 5 N 1.46499 * 109.46794 * 120.00570 * 2 1 3 6 6 C 1.34777 * 120.00525 * 59.99482 * 5 2 1 7 7 O 1.21277 * 119.99801 * 0.02562 * 6 5 2 8 8 C 1.50699 * 120.00220 * 179.97438 * 6 5 2 9 9 H 1.09002 * 109.49817 * 60.00375 * 8 6 5 10 10 C 1.53119 * 109.50574 * 299.92934 * 8 6 5 11 11 C 1.53202 * 109.11733 * 182.40221 * 10 8 6 12 12 C 1.53036 * 109.30010 * 57.62592 * 11 10 8 13 13 N 1.46856 * 109.52288 * 300.82172 * 12 11 10 14 14 C 1.46896 * 110.99676 * 185.83995 * 13 12 11 15 15 C 1.50705 * 109.47334 * 300.35549 * 14 13 12 16 16 H 1.08002 * 119.99769 * 4.89278 * 15 14 13 17 17 C 1.37875 * 119.99924 * 184.88302 * 15 14 13 18 18 N 1.31519 * 119.99629 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00130 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47281 * 89.99688 * 19 17 15 21 21 H 1.48497 * 109.46954 * 209.99795 * 19 17 15 22 22 H 1.48497 * 109.46971 * 329.99539 * 19 17 15 23 23 C 1.46844 * 111.19777 * 61.74180 * 13 12 11 24 24 H 1.08994 * 109.47183 * 300.00095 * 1 2 3 25 25 H 1.08999 * 109.46635 * 59.99942 * 1 2 3 26 26 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47177 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46983 * 300.00443 * 3 2 1 29 29 H 1.09004 * 109.46945 * 59.99773 * 3 2 1 30 30 H 1.08995 * 109.47232 * 300.00359 * 4 2 1 31 31 H 1.08999 * 109.47303 * 60.00581 * 4 2 1 32 32 H 1.09005 * 109.47054 * 180.02562 * 4 2 1 33 33 H 0.96999 * 119.99527 * 239.99628 * 5 2 1 34 34 H 1.09002 * 109.52240 * 302.26390 * 10 8 6 35 35 H 1.08995 * 109.52463 * 62.45362 * 10 8 6 36 36 H 1.08997 * 109.48937 * 297.67724 * 11 10 8 37 37 H 1.08997 * 109.49415 * 177.57433 * 11 10 8 38 38 H 1.09003 * 109.46355 * 180.80959 * 12 11 10 39 39 H 1.08999 * 109.46460 * 60.83485 * 12 11 10 40 40 H 1.08998 * 109.47650 * 60.35975 * 14 13 12 41 41 H 1.09007 * 109.46968 * 180.35787 * 14 13 12 42 42 H 0.97002 * 119.99193 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.46283 * 178.24115 * 23 13 12 44 44 H 1.09007 * 109.46401 * 58.26987 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6926 -1.9811 1.4094 7 8 0.9957 -2.5705 0.6109 8 6 2.1954 -2.6917 2.6396 9 1 1.8327 -2.1783 3.5301 10 6 3.7266 -2.6939 2.6388 11 6 4.2278 -3.4700 3.8609 12 6 3.6606 -4.8909 3.8253 13 7 2.1932 -4.8338 3.8276 14 6 1.6142 -6.1797 3.9335 15 6 2.0705 -7.0162 2.7659 16 1 2.7868 -6.6171 2.0629 17 6 1.5737 -8.2909 2.5951 18 7 1.9715 -9.0206 1.5759 19 14 0.3345 -8.9810 3.8107 20 1 -1.0405 -8.6519 3.3565 21 1 0.4893 -10.4556 3.8920 22 1 0.5696 -8.3840 5.1499 23 6 1.6871 -4.1352 2.6394 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4423 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2490 33 1 2.5760 -0.2194 1.8346 34 1 4.0897 -3.1728 1.7294 35 1 4.0923 -1.6681 2.6823 36 1 3.8971 -2.9689 4.7706 37 1 5.3168 -3.5123 3.8434 38 1 4.0040 -5.4411 4.7013 39 1 4.0029 -5.3961 2.9221 40 1 1.9422 -6.6443 4.8634 41 1 0.5265 -6.1089 3.9266 42 1 1.6217 -9.9173 1.4556 43 1 0.5972 -4.1364 2.6540 44 1 2.0387 -4.6438 1.7417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049754139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:57 Heat of formation + Delta-G solvation = -50.832939 kcal Electronic energy + Delta-G solvation = -21728.392141 eV Core-core repulsion = 18679.891364 eV Total energy + Delta-G solvation = -3048.500778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26004 -38.10110 -36.28541 -33.82574 -32.23645 -31.49809 -30.24722 -27.52464 -27.32789 -27.26893 -23.95737 -23.52609 -21.40598 -20.56793 -19.45983 -19.07723 -16.98508 -16.74906 -15.87352 -15.20376 -14.81661 -14.29634 -14.20297 -14.11080 -13.85317 -13.57217 -13.32388 -13.03595 -12.66631 -12.51876 -12.30333 -12.18251 -12.07482 -11.92697 -11.65494 -11.27228 -11.19007 -11.10592 -11.00843 -10.81072 -10.46845 -10.35680 -10.19071 -9.99151 -9.77943 -9.43631 -9.16216 -8.98479 -8.53975 -7.17162 -6.05135 -4.04677 2.90204 3.23397 3.32227 3.39277 3.42850 4.44398 4.59448 4.79569 4.85172 4.96171 4.99800 5.12376 5.28191 5.30236 5.36034 5.48978 5.54252 5.63240 5.67053 5.69051 5.74360 5.86458 5.88723 5.90888 5.99637 6.17699 6.18923 6.29205 6.34513 6.37533 6.48079 6.63879 6.66505 6.83339 6.92985 7.00381 7.12042 7.60274 7.66216 8.07858 8.14391 8.48165 8.49871 8.97654 9.57709 11.07999 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024932 B = 0.004787 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.783829 B = 5847.655524 C = 6374.313298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 C -0.154 4.154 4 C -0.165 4.165 5 N -0.730 5.730 6 C 0.522 3.478 7 O -0.526 6.526 8 C -0.104 4.104 9 H 0.097 0.903 10 C -0.106 4.106 11 C -0.114 4.114 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.156 3.844 15 C -0.550 4.550 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.879 3.121 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.084 3.916 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 20.756 0.467 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.223 4.223 5 N -0.384 5.384 6 C 0.308 3.692 7 O -0.402 6.402 8 C -0.126 4.126 9 H 0.115 0.885 10 C -0.144 4.144 11 C -0.152 4.152 12 C -0.071 4.071 13 N -0.259 5.259 14 C 0.029 3.971 15 C -0.588 4.588 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.044 4.044 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.601 20.404 0.208 20.468 hybrid contribution -0.124 -0.716 0.053 0.729 sum 1.476 19.688 0.262 19.745 Atomic orbital electron populations 1.22229 0.94425 1.04249 1.01321 1.20280 0.94354 0.91507 0.85605 1.22077 1.01482 0.94802 1.02770 1.22233 1.00832 1.03104 0.96111 1.46221 1.54575 1.12410 1.25144 1.20796 0.79590 0.81194 0.87611 1.90658 1.37117 1.65859 1.46521 1.21418 0.96923 0.98648 0.95637 0.88526 1.21527 0.93228 0.99875 0.99760 1.21625 0.99256 0.96878 0.97459 1.21921 0.89170 0.94501 1.01463 1.62356 1.06028 1.19845 1.37684 1.20151 0.94971 0.85005 0.96951 1.21694 1.27060 0.99390 1.10704 0.90717 1.24969 0.96146 0.96855 0.95076 1.69937 1.44105 1.10350 1.29356 0.86798 0.82093 0.78111 0.82413 1.20185 1.21362 1.18866 1.21598 0.99534 0.89655 0.93662 0.92889 0.92207 0.90082 0.92053 0.91075 0.92089 0.90038 0.92213 0.92844 0.76954 0.91776 0.92370 0.91655 0.92003 0.91576 0.93700 0.95316 0.95693 0.92747 0.91228 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.40 37.16 0.31 -1.55 16 2 C 0.17 1.77 1.06 -131.82 -0.14 1.63 16 3 C -0.15 -1.12 8.59 37.16 0.32 -0.80 16 4 C -0.16 -1.94 8.40 37.16 0.31 -1.62 16 5 N -0.73 -8.21 5.01 -47.61 -0.24 -8.45 16 6 C 0.52 7.95 6.58 -10.99 -0.07 7.88 16 7 O -0.53 -10.10 12.19 5.56 0.07 -10.04 16 8 C -0.10 -1.59 2.69 -91.69 -0.25 -1.84 16 9 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 10 C -0.11 -1.43 5.17 -26.57 -0.14 -1.57 16 11 C -0.11 -1.62 6.09 -26.61 -0.16 -1.78 16 12 C 0.06 1.10 5.04 -3.83 -0.02 1.08 16 13 N -0.54 -11.23 4.86 -236.11 -1.15 -12.37 16 14 C 0.16 3.83 4.19 -4.98 -0.02 3.81 16 15 C -0.55 -15.67 8.29 -34.44 -0.29 -15.95 16 16 H 0.07 2.32 6.10 -52.49 -0.32 2.00 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 19 Si 0.88 21.90 27.37 -169.99 -4.65 17.25 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.26 -6.29 6.68 56.52 0.38 -5.92 16 23 C 0.08 1.72 3.69 -3.84 -0.01 1.70 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.18 6.17 -51.93 -0.32 0.86 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 3.38 7.95 -40.82 -0.32 3.06 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 39 H 0.04 0.98 6.57 -51.93 -0.34 0.64 16 40 H 0.03 0.71 7.54 -51.93 -0.39 0.32 16 41 H 0.02 0.62 7.25 -51.92 -0.38 0.25 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.07 1.50 8.06 -51.93 -0.42 1.08 16 44 H 0.05 1.25 6.98 -51.92 -0.36 0.89 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -32.41 334.34 -8.21 -40.62 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.80 Total: 2.20 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.25 Total: -7.00 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.61 Total: -48.06 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.65 Total: 17.25 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.41 -8.21 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.214 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds