Wall clock time and date at job start Mon Mar 30 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47242 * 239.99974 * 2 1 3 5 5 N 1.46500 * 109.46984 * 120.00246 * 2 1 3 6 6 C 1.34775 * 119.99903 * 59.99740 * 5 2 1 7 7 O 1.21280 * 120.00523 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99859 * 180.02562 * 6 5 2 9 9 H 1.08997 * 109.53533 * 300.10066 * 8 6 5 10 10 C 1.53120 * 109.50362 * 60.19730 * 8 6 5 11 11 C 1.53120 * 109.16082 * 177.59655 * 10 8 6 12 12 C 1.53037 * 109.27865 * 302.34553 * 11 10 8 13 13 N 1.46842 * 109.52367 * 59.17943 * 12 11 10 14 14 C 1.46902 * 111.00276 * 174.16333 * 13 12 11 15 15 C 1.50706 * 109.46577 * 294.21004 * 14 13 12 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.46850 * 111.19788 * 298.25830 * 13 12 11 24 24 H 1.09003 * 109.47134 * 300.00005 * 1 2 3 25 25 H 1.09001 * 109.47121 * 60.00005 * 1 2 3 26 26 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46853 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47118 * 299.99997 * 3 2 1 29 29 H 1.09003 * 109.47120 * 59.99986 * 3 2 1 30 30 H 1.09003 * 109.47183 * 300.00724 * 4 2 1 31 31 H 1.09001 * 109.47046 * 59.99974 * 4 2 1 32 32 H 1.08995 * 109.47253 * 180.02562 * 4 2 1 33 33 H 0.96998 * 119.99768 * 239.99828 * 5 2 1 34 34 H 1.08997 * 109.52123 * 297.50204 * 10 8 6 35 35 H 1.08999 * 109.52091 * 57.62464 * 10 8 6 36 36 H 1.08996 * 109.50458 * 62.29118 * 11 10 8 37 37 H 1.08999 * 109.50108 * 182.36776 * 11 10 8 38 38 H 1.09005 * 109.46004 * 299.16564 * 12 11 10 39 39 H 1.08998 * 109.46199 * 179.20071 * 12 11 10 40 40 H 1.09000 * 109.46894 * 174.21237 * 14 13 12 41 41 H 1.09000 * 109.47263 * 54.20804 * 14 13 12 42 42 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46046 * 181.75569 * 23 13 12 44 44 H 1.08998 * 109.46430 * 301.72103 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 1.6926 -1.9810 1.4094 7 8 0.9957 -2.5705 0.6108 8 6 2.1945 -2.6913 2.6401 9 1 3.2844 -2.6903 2.6426 10 6 1.6799 -1.9728 3.8906 11 6 2.1441 -2.7349 5.1349 12 6 1.6359 -4.1766 5.0632 13 7 2.1562 -4.8207 3.8505 14 6 1.8027 -6.2462 3.8183 15 6 2.5061 -6.9635 4.9417 16 1 3.1508 -6.4151 5.6126 17 6 2.3257 -8.3196 5.1134 18 7 2.9392 -8.9454 6.0941 19 14 1.2090 -9.2675 3.9544 20 1 2.0020 -9.7705 2.8039 21 1 0.6039 -10.4147 4.6778 22 1 0.1333 -8.3711 3.4599 23 6 1.6848 -4.1343 2.6408 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 2.5760 -0.2193 1.8346 34 1 2.0759 -0.9577 3.9163 35 1 0.5906 -1.9384 3.8685 36 1 3.2332 -2.7346 5.1766 37 1 1.7456 -2.2519 6.0271 38 1 0.5462 -4.1766 5.0355 39 1 1.9767 -4.7259 5.9409 40 1 2.1099 -6.6752 2.8645 41 1 0.7246 -6.3560 3.9358 42 1 2.8120 -9.8994 6.2152 43 1 2.0612 -4.6528 1.7590 44 1 0.5949 -4.1346 2.6244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049754141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:00 Heat of formation + Delta-G solvation = -50.183361 kcal Electronic energy + Delta-G solvation = -21462.896470 eV Core-core repulsion = 18414.423860 eV Total energy + Delta-G solvation = -3048.472610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.40906 -38.16951 -36.41419 -33.84951 -32.33716 -31.61175 -30.39068 -27.62689 -27.58110 -27.39890 -24.16693 -23.35631 -21.50111 -20.54397 -19.59920 -19.25739 -17.10340 -16.74851 -16.00161 -15.32924 -14.92446 -14.40468 -14.32851 -14.03550 -13.99171 -13.75323 -13.39977 -13.18957 -12.83673 -12.59595 -12.38146 -12.27949 -12.20849 -12.16789 -11.77526 -11.48062 -11.32753 -11.23941 -11.00602 -10.82236 -10.61356 -10.41526 -10.33467 -9.90864 -9.80484 -9.39075 -9.18601 -9.11771 -8.53650 -7.33196 -6.02780 -3.99806 2.73304 3.09775 3.32397 3.39453 3.43493 4.45556 4.47055 4.68670 4.71036 4.84960 4.86719 5.00321 5.15572 5.26483 5.29963 5.38850 5.41929 5.52749 5.55799 5.59016 5.63043 5.74492 5.77791 5.78605 5.85570 6.06709 6.12732 6.15113 6.17102 6.21427 6.27556 6.42247 6.53728 6.64605 6.70268 6.93460 7.04595 7.51154 7.63287 7.93816 8.09871 8.30890 8.68687 9.05159 9.59522 11.10196 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.004174 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.128734 B = 6706.082595 C = 7248.196218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 C -0.154 4.154 4 C -0.164 4.164 5 N -0.728 5.728 6 C 0.524 3.476 7 O -0.534 6.534 8 C -0.103 4.103 9 H 0.104 0.896 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.528 5.528 14 C 0.163 3.837 15 C -0.508 4.508 16 H 0.081 0.919 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 C 0.075 3.925 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.091 0.909 40 H 0.025 0.975 41 H -0.011 1.011 42 H 0.263 0.737 43 H 0.073 0.927 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 21.596 -9.764 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.082 3.918 3 C -0.212 4.212 4 C -0.222 4.222 5 N -0.381 5.381 6 C 0.311 3.689 7 O -0.411 6.411 8 C -0.125 4.125 9 H 0.122 0.878 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.252 5.252 14 C 0.037 3.963 15 C -0.546 4.546 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.054 4.054 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.109 0.891 40 H 0.043 0.957 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.290 21.010 -10.258 23.493 hybrid contribution -1.126 -0.415 -0.323 1.243 sum -3.417 20.595 -10.581 23.405 Atomic orbital electron populations 1.22226 0.94407 1.04126 1.01428 1.20299 0.94358 0.91632 0.85515 1.22083 1.01572 0.94680 1.02865 1.22231 1.00906 1.02953 0.96159 1.46215 1.54395 1.12354 1.25120 1.20789 0.79477 0.81318 0.87358 1.90624 1.37434 1.66044 1.46951 1.21378 1.02647 0.96465 0.92027 0.87823 1.21537 1.00717 0.98028 0.94124 1.21617 1.01834 0.95750 0.96114 1.22008 0.96008 0.93440 0.95339 1.61837 1.59378 1.03984 1.00013 1.20153 0.94283 0.83796 0.98095 1.21035 1.27968 0.93037 1.12591 0.90077 1.24886 0.95621 0.97529 0.95271 1.69896 1.43364 1.09707 1.31069 0.86883 0.81708 0.79906 0.81426 1.20107 1.21228 1.19221 1.21757 0.97308 0.91498 0.94805 0.92836 0.92151 0.90220 0.91959 0.91024 0.92005 0.90170 0.92148 0.92751 0.76741 0.92129 0.92106 0.91003 0.91824 0.96240 0.89113 0.95702 0.99345 0.92700 0.90814 0.95210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.40 37.16 0.31 -1.34 16 2 C 0.17 1.56 1.06 -131.82 -0.14 1.42 16 3 C -0.15 -0.99 8.59 37.16 0.32 -0.67 16 4 C -0.16 -1.68 8.40 37.16 0.31 -1.37 16 5 N -0.73 -7.33 5.01 -47.61 -0.24 -7.57 16 6 C 0.52 7.16 6.58 -10.98 -0.07 7.09 16 7 O -0.53 -9.07 12.19 5.56 0.07 -9.00 16 8 C -0.10 -1.46 2.69 -91.69 -0.25 -1.71 16 9 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 10 C -0.11 -1.31 5.16 -26.61 -0.14 -1.45 16 11 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 12 C 0.06 1.14 5.29 -3.84 -0.02 1.12 16 13 N -0.53 -11.17 4.65 -236.11 -1.10 -12.27 16 14 C 0.16 4.07 3.79 -4.97 -0.02 4.05 16 15 C -0.51 -14.53 8.98 -34.44 -0.31 -14.84 16 16 H 0.08 2.49 7.36 -52.49 -0.39 2.11 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 19 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 23 C 0.08 1.39 4.03 -3.83 -0.02 1.38 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.05 6.17 -51.93 -0.32 0.73 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.40 3.04 7.95 -40.82 -0.32 2.71 16 34 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 1.93 6.70 -51.93 -0.35 1.58 16 40 H 0.02 0.63 7.42 -51.93 -0.39 0.24 16 41 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 43 H 0.07 1.43 7.99 -51.93 -0.41 1.01 16 44 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -32.14 337.26 -8.29 -40.43 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.93 Total: -0.78 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.28 Total: -6.22 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.56 Total: -46.80 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.14 -8.29 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.758 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds