Wall clock time and date at job start Mon Mar 30 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47242 * 239.99974 * 2 1 3 5 5 N 1.46500 * 109.46984 * 120.00246 * 2 1 3 6 6 C 1.34775 * 119.99903 * 59.99740 * 5 2 1 7 7 O 1.21280 * 120.00523 * 0.02562 * 6 5 2 8 8 C 1.50703 * 119.99859 * 180.02562 * 6 5 2 9 9 H 1.08997 * 109.53533 * 300.10066 * 8 6 5 10 10 C 1.53120 * 109.50362 * 60.19730 * 8 6 5 11 11 C 1.53120 * 109.16082 * 177.59655 * 10 8 6 12 12 C 1.53037 * 109.27865 * 302.34553 * 11 10 8 13 13 N 1.46842 * 109.52367 * 59.17943 * 12 11 10 14 14 C 1.46902 * 111.00276 * 174.16333 * 13 12 11 15 15 C 1.50706 * 109.46577 * 294.21004 * 14 13 12 16 16 H 1.07999 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86789 * 120.00458 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47200 * 90.00092 * 19 17 15 21 21 H 1.48505 * 109.47499 * 210.00153 * 19 17 15 22 22 H 1.48500 * 109.47262 * 330.00415 * 19 17 15 23 23 C 1.46850 * 111.19788 * 298.25830 * 13 12 11 24 24 H 1.09003 * 109.47134 * 300.00005 * 1 2 3 25 25 H 1.09001 * 109.47121 * 60.00005 * 1 2 3 26 26 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46853 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47118 * 299.99997 * 3 2 1 29 29 H 1.09003 * 109.47120 * 59.99986 * 3 2 1 30 30 H 1.09003 * 109.47183 * 300.00724 * 4 2 1 31 31 H 1.09001 * 109.47046 * 59.99974 * 4 2 1 32 32 H 1.08995 * 109.47253 * 180.02562 * 4 2 1 33 33 H 0.96998 * 119.99768 * 239.99828 * 5 2 1 34 34 H 1.08997 * 109.52123 * 297.50204 * 10 8 6 35 35 H 1.08999 * 109.52091 * 57.62464 * 10 8 6 36 36 H 1.08996 * 109.50458 * 62.29118 * 11 10 8 37 37 H 1.08999 * 109.50108 * 182.36776 * 11 10 8 38 38 H 1.09005 * 109.46004 * 299.16564 * 12 11 10 39 39 H 1.08998 * 109.46199 * 179.20071 * 12 11 10 40 40 H 1.09000 * 109.46894 * 174.21237 * 14 13 12 41 41 H 1.09000 * 109.47263 * 54.20804 * 14 13 12 42 42 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46046 * 181.75569 * 23 13 12 44 44 H 1.08998 * 109.46430 * 301.72103 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 1.6926 -1.9810 1.4094 7 8 0.9957 -2.5705 0.6108 8 6 2.1945 -2.6913 2.6401 9 1 3.2844 -2.6903 2.6426 10 6 1.6799 -1.9728 3.8906 11 6 2.1441 -2.7349 5.1349 12 6 1.6359 -4.1766 5.0632 13 7 2.1562 -4.8207 3.8505 14 6 1.8027 -6.2462 3.8183 15 6 2.5061 -6.9635 4.9417 16 1 3.1508 -6.4151 5.6126 17 6 2.3257 -8.3196 5.1134 18 7 2.9392 -8.9454 6.0941 19 14 1.2090 -9.2675 3.9544 20 1 2.0020 -9.7705 2.8039 21 1 0.6039 -10.4147 4.6778 22 1 0.1333 -8.3711 3.4599 23 6 1.6848 -4.1343 2.6408 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 2.5760 -0.2193 1.8346 34 1 2.0759 -0.9577 3.9163 35 1 0.5906 -1.9384 3.8685 36 1 3.2332 -2.7346 5.1766 37 1 1.7456 -2.2519 6.0271 38 1 0.5462 -4.1766 5.0355 39 1 1.9767 -4.7259 5.9409 40 1 2.1099 -6.6752 2.8645 41 1 0.7246 -6.3560 3.9358 42 1 2.8120 -9.8994 6.2152 43 1 2.0612 -4.6528 1.7590 44 1 0.5949 -4.1346 2.6244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049754141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:59 Heat of formation + Delta-G solvation = -73.354167 kcal Electronic energy + Delta-G solvation = -21463.901232 eV Core-core repulsion = 18414.423860 eV Total energy + Delta-G solvation = -3049.477371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47336 -39.50656 -37.40444 -35.52467 -34.13006 -32.84852 -31.65771 -29.53178 -28.21399 -28.18724 -25.58455 -24.86581 -23.04458 -21.85514 -20.62433 -20.46389 -18.94256 -18.19696 -16.99417 -16.65883 -16.23277 -16.04834 -15.70759 -15.24164 -15.10434 -14.87261 -14.79075 -14.51657 -14.31938 -14.02647 -13.69256 -13.25905 -13.19317 -12.99269 -12.97417 -12.72351 -12.53156 -12.45296 -12.36081 -12.07949 -12.00641 -11.92468 -11.80168 -11.67800 -11.36337 -11.22215 -10.80199 -10.42069 -10.03364 -9.08107 -8.30710 -6.33259 1.32033 1.32640 1.43773 1.67870 2.17725 2.31782 3.01896 3.21238 3.63815 3.79557 3.89676 3.98794 4.04224 4.15651 4.26144 4.30223 4.38394 4.64694 4.68241 4.72091 4.73342 4.73458 4.81237 4.83411 4.88213 4.94901 4.98193 5.02148 5.04549 5.06357 5.12840 5.24331 5.25631 5.38578 5.41415 5.44593 5.51938 5.68515 5.96476 6.36250 6.59656 6.66784 6.72140 7.30256 7.34321 8.85424 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.004174 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.128734 B = 6706.082595 C = 7248.196218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.163 3.837 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.709 5.709 6 C 0.525 3.475 7 O -0.573 6.573 8 C -0.097 4.097 9 H 0.115 0.885 10 C -0.098 4.098 11 C -0.106 4.106 12 C 0.057 3.943 13 N -0.536 5.536 14 C 0.171 3.829 15 C -0.513 4.513 16 H 0.046 0.954 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.940 3.060 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.261 1.261 23 C 0.078 3.922 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.015 0.985 39 H 0.057 0.943 40 H 0.022 0.978 41 H -0.019 1.019 42 H 0.268 0.732 43 H 0.057 0.943 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 24.518 -10.800 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 C -0.204 4.204 4 C -0.221 4.221 5 N -0.363 5.363 6 C 0.312 3.688 7 O -0.452 6.452 8 C -0.118 4.118 9 H 0.133 0.867 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.071 4.071 13 N -0.260 5.260 14 C 0.044 3.956 15 C -0.551 4.551 16 H 0.064 0.936 17 C -0.185 4.185 18 N -0.584 5.584 19 Si 0.764 3.236 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.050 4.050 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.040 0.960 41 H -0.002 1.002 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.428 23.991 -11.286 26.624 hybrid contribution -1.040 -1.284 0.026 1.653 sum -3.468 22.707 -11.260 25.581 Atomic orbital electron populations 1.22193 0.95050 1.02112 1.02631 1.20473 0.93937 0.93306 0.84509 1.22038 1.02172 0.92090 1.04116 1.22208 1.01146 1.01192 0.97599 1.46076 1.53533 1.11033 1.25613 1.20632 0.79169 0.82349 0.86667 1.90634 1.39312 1.67201 1.48075 1.21284 1.03145 0.93755 0.93639 0.86717 1.21531 1.00589 0.99685 0.91719 1.21567 1.01941 0.92421 0.98408 1.22061 0.95771 0.96222 0.93017 1.61786 1.59855 1.02419 1.01974 1.19918 0.93110 0.86323 0.96299 1.21204 1.27520 0.93388 1.13001 0.93596 1.25739 0.97197 0.98600 0.96942 1.70025 1.45100 1.10320 1.32948 0.85815 0.79824 0.78534 0.79388 1.19002 1.20221 1.18486 1.21722 0.96430 0.94136 0.92747 0.92080 0.90548 0.93755 0.90972 0.89825 0.90776 0.93701 0.90494 0.92259 0.74860 0.87570 0.92509 0.90763 0.89166 0.96696 0.92405 0.95990 1.00157 0.92327 0.92402 0.96646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.40 71.98 0.60 -2.37 16 2 C 0.16 2.61 1.06 3.60 0.00 2.61 16 3 C -0.15 -1.26 8.59 71.98 0.62 -0.65 16 4 C -0.16 -3.08 8.40 71.98 0.60 -2.48 16 5 N -0.71 -12.27 5.01 -422.92 -2.12 -14.39 16 6 C 0.53 13.65 6.58 87.66 0.58 14.22 16 7 O -0.57 -19.62 12.19 -3.03 -0.04 -19.66 16 8 C -0.10 -2.58 2.69 -11.49 -0.03 -2.61 16 9 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 10 C -0.10 -2.11 5.16 30.67 0.16 -1.95 16 11 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 12 C 0.06 2.20 5.29 86.33 0.46 2.66 16 13 N -0.54 -23.17 4.65 -900.92 -4.19 -27.35 16 14 C 0.17 8.76 3.79 85.56 0.32 9.09 16 15 C -0.51 -30.43 8.98 25.60 0.23 -30.20 16 16 H 0.05 2.98 7.36 -2.91 -0.02 2.95 16 17 C 0.01 0.77 5.47 84.66 0.46 1.24 16 18 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 19 Si 0.94 45.91 27.47 68.60 1.88 47.79 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 23 C 0.08 2.92 4.03 86.32 0.35 3.27 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.15 6.17 -2.39 -0.01 1.14 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 1.18 6.17 -2.39 -0.01 1.17 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.41 4.53 7.95 -92.71 -0.74 3.79 16 34 H 0.11 1.42 7.66 -2.39 -0.02 1.40 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.06 2.57 6.70 -2.39 -0.02 2.56 16 40 H 0.02 1.13 7.42 -2.39 -0.02 1.12 16 41 H -0.02 -1.01 7.18 -2.39 -0.02 -1.02 16 42 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 43 H 0.06 2.30 7.99 -2.39 -0.02 2.29 16 44 H 0.02 0.61 8.08 -2.39 -0.02 0.59 16 Total: -1.00 -73.66 337.26 0.55 -73.11 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.17 Total: 9.52 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.54 Total: -9.76 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -6.01 Total: -101.00 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.79 kcal Total: -73.66 0.55 -73.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.246 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds