Wall clock time and date at job start Mon Mar 30 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47351 * 2 1 4 4 C 1.53004 * 109.47175 * 120.00104 * 2 1 3 5 5 N 1.46904 * 109.47082 * 178.51399 * 4 2 1 6 6 C 1.46904 * 110.99937 * 285.93125 * 5 4 2 7 7 C 1.50704 * 109.47169 * 75.78475 * 6 5 4 8 8 H 1.07997 * 119.99973 * 5.35627 * 7 6 5 9 9 C 1.37879 * 119.99839 * 185.35616 * 7 6 5 10 10 N 1.31516 * 119.99889 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99809 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47338 * 60.00298 * 11 9 7 13 13 H 1.48498 * 109.47254 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47544 * 299.99933 * 11 9 7 15 15 C 1.46893 * 111.00051 * 161.97783 * 5 4 2 16 16 C 1.53000 * 109.46918 * 287.37422 * 15 5 4 17 17 C 1.50705 * 109.46897 * 179.06296 * 16 15 5 18 18 O 1.21277 * 120.00127 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.46504 * 120.00075 * 179.97438 * 19 17 16 21 21 C 1.52999 * 117.49901 * 223.62862 * 20 19 17 22 22 C 1.52996 * 117.49953 * 155.00207 * 20 19 17 23 23 H 1.08994 * 109.46826 * 299.99517 * 1 2 3 24 24 H 1.08993 * 109.46783 * 59.99973 * 1 2 3 25 25 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47150 * 239.99915 * 2 1 3 27 27 H 1.08998 * 109.47591 * 184.21055 * 3 2 1 28 28 H 1.09007 * 109.47307 * 304.21440 * 3 2 1 29 29 H 1.09001 * 109.46992 * 64.20837 * 3 2 1 30 30 H 1.09000 * 109.47189 * 58.51736 * 4 2 1 31 31 H 1.08996 * 109.47128 * 298.51125 * 4 2 1 32 32 H 1.08995 * 109.47279 * 195.78660 * 6 5 4 33 33 H 1.08999 * 109.47155 * 315.78260 * 6 5 4 34 34 H 0.96998 * 119.99709 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.47389 * 167.37727 * 15 5 4 36 36 H 1.08998 * 109.47204 * 47.37052 * 15 5 4 37 37 H 1.08998 * 109.47592 * 299.06202 * 16 15 5 38 38 H 1.09000 * 109.47182 * 59.06475 * 16 15 5 39 39 H 0.97004 * 120.00302 * 0.02562 * 19 17 16 40 40 H 1.09002 * 115.54378 * 9.33482 * 20 19 17 41 41 H 1.08994 * 117.50056 * 359.97438 * 21 20 19 42 42 H 1.08996 * 117.49665 * 145.01922 * 21 20 19 43 43 H 1.08999 * 117.49643 * 214.97796 * 22 20 19 44 44 H 1.09000 * 117.49897 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5086 -0.7525 1.2314 6 6 4.0026 -1.7256 0.2481 7 6 3.8521 -1.1580 -1.1398 8 1 3.5129 -0.1414 -1.2736 9 6 4.1473 -1.9365 -2.2388 10 7 4.5607 -3.1743 -2.0758 11 14 3.9600 -1.2332 -3.9591 12 1 4.8450 -0.0503 -4.1094 13 1 4.3369 -2.2642 -4.9592 14 1 2.5485 -0.8262 -4.1766 15 6 4.0454 -1.0368 2.5689 16 6 3.8629 0.1911 3.4632 17 6 4.3928 -0.1084 4.8419 18 8 4.8698 -1.1966 5.0850 19 7 4.3374 0.8335 5.8044 20 6 4.8519 0.5422 7.1448 21 6 4.0094 0.9953 8.3388 22 6 5.3097 1.7264 7.9986 23 1 -0.3633 0.5137 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1274 1.4434 -0.0754 28 1 1.6164 1.9777 -0.8499 29 1 1.7396 1.9340 0.9253 30 1 1.6552 -1.7410 1.2626 31 1 1.6987 -0.1923 2.1390 32 1 5.0542 -1.9365 0.4422 33 1 3.4265 -2.6474 0.3281 34 1 4.7681 -3.7221 -2.8490 35 1 5.1062 -1.2754 2.4915 36 1 3.5130 -1.8837 3.0016 37 1 4.4090 1.0339 3.0393 38 1 2.8036 0.4398 3.5272 39 1 3.9562 1.7040 5.6099 40 1 5.4038 -0.3926 7.2435 41 1 3.0725 1.5104 8.1271 42 1 4.0068 0.3585 9.2234 43 1 6.1624 1.5705 8.6594 44 1 5.2284 2.7222 7.5628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054049921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:59 Heat of formation + Delta-G solvation = -19.808419 kcal Electronic energy + Delta-G solvation = -20923.104353 eV Core-core repulsion = 17875.948899 eV Total energy + Delta-G solvation = -3047.155454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.82227 -37.69961 -37.04030 -33.87601 -32.97757 -32.63497 -30.31030 -27.01483 -26.43499 -25.29267 -23.24736 -22.68735 -21.66295 -20.71052 -20.15302 -19.00518 -17.13989 -16.62677 -16.30160 -15.48251 -14.99050 -14.77565 -14.50758 -14.09724 -13.75759 -13.63621 -12.96400 -12.85247 -12.64191 -12.30983 -12.16736 -11.89810 -11.77649 -11.64191 -11.50711 -11.14671 -11.01479 -10.84162 -10.79541 -10.51819 -10.46440 -10.17759 -10.12171 -9.86676 -9.74341 -9.30487 -9.00560 -8.88682 -8.33992 -7.20571 -5.97647 -3.96312 2.64484 3.00183 3.35030 3.39862 3.41948 3.66720 4.43939 4.50961 4.67109 4.71499 4.74560 5.14608 5.31038 5.32103 5.37318 5.47480 5.54476 5.67400 5.71589 5.75227 5.76129 5.93109 6.01460 6.12564 6.25353 6.27915 6.36512 6.41881 6.44910 6.53376 6.60040 6.73194 6.84334 7.17547 7.29861 7.39543 7.43545 7.50102 7.89871 8.16853 8.25236 8.26172 8.60034 9.09722 9.64523 11.12736 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.003965 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.036351 B = 7059.657865 C = 7677.021853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.127 4.127 4 C 0.077 3.923 5 N -0.536 5.536 6 C 0.192 3.808 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.053 3.947 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.072 3.928 16 C -0.133 4.133 17 C 0.519 3.481 18 O -0.536 6.536 19 N -0.710 5.710 20 C 0.082 3.918 21 C -0.196 4.196 22 C -0.192 4.192 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.022 0.978 31 H 0.046 0.954 32 H 0.024 0.976 33 H -0.003 1.003 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.029 0.971 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.401 0.599 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 10.798 15.391 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.185 4.185 4 C -0.051 4.051 5 N -0.260 5.260 6 C 0.067 3.933 7 C -0.543 4.543 8 H 0.096 0.904 9 C -0.148 4.148 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.057 4.057 16 C -0.173 4.173 17 C 0.306 3.694 18 O -0.412 6.412 19 N -0.361 5.361 20 C -0.024 4.024 21 C -0.235 4.235 22 C -0.230 4.230 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.137 0.863 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.236 0.764 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.200 10.272 15.278 18.686 hybrid contribution -0.602 -0.019 -0.657 0.892 sum -3.803 10.253 14.620 18.258 Atomic orbital electron populations 1.21836 0.97348 1.00688 1.00256 1.21595 0.92785 0.97022 1.01771 1.21633 1.02679 0.95450 0.98689 1.21962 0.88666 0.97715 0.96793 1.62059 1.06873 1.52799 1.04296 1.19790 0.95051 0.88666 0.89750 1.21363 1.43571 0.99565 0.89809 0.90413 1.25016 0.95684 0.94891 0.99186 1.69960 1.45762 1.07646 1.30394 0.86661 0.78597 0.78657 0.84139 1.20186 1.21507 1.20194 1.21710 1.01018 0.93402 0.89599 1.21693 1.02528 1.02426 0.90646 1.21051 0.77804 0.83806 0.86694 1.90695 1.44729 1.23416 1.82360 1.45501 1.63572 1.17107 1.09925 1.21576 1.01210 0.99404 0.80235 1.23418 0.95544 1.04385 1.00166 1.23366 0.98691 0.97294 1.03655 0.94140 0.93392 0.93455 0.86259 0.90970 0.94724 0.94874 0.95970 0.93583 0.95788 0.98501 0.92972 0.90694 0.95235 0.88103 0.89163 0.76446 0.84570 0.88561 0.88125 0.87991 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.19 37.16 0.34 -1.90 16 2 C -0.11 -2.10 2.40 -90.62 -0.22 -2.32 16 3 C -0.13 -2.15 8.46 37.16 0.31 -1.84 16 4 C 0.08 1.45 4.24 -3.82 -0.02 1.43 16 5 N -0.54 -11.08 3.79 -236.07 -0.89 -11.97 16 6 C 0.19 4.93 4.76 -4.97 -0.02 4.91 16 7 C -0.50 -13.50 6.94 -34.44 -0.24 -13.74 16 8 H 0.08 2.00 4.69 -52.49 -0.25 1.75 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.07 1.34 4.26 -3.83 -0.02 1.32 16 16 C -0.13 -1.86 5.79 -27.88 -0.16 -2.02 16 17 C 0.52 7.41 7.83 -10.98 -0.09 7.33 16 18 O -0.54 -9.87 15.55 5.56 0.09 -9.78 16 19 N -0.71 -7.50 5.57 -53.80 -0.30 -7.80 16 20 C 0.08 0.81 6.43 -67.93 -0.44 0.38 16 21 C -0.20 -1.49 10.46 -26.73 -0.28 -1.77 16 22 C -0.19 -1.39 10.46 -26.73 -0.28 -1.67 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.12 2.67 4.80 -51.93 -0.25 2.43 16 27 H 0.07 1.36 6.87 -51.93 -0.36 1.00 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.45 7.77 -51.93 -0.40 0.05 16 31 H 0.05 0.75 6.29 -51.93 -0.33 0.42 16 32 H 0.02 0.67 7.64 -51.93 -0.40 0.27 16 33 H 0.00 -0.08 7.76 -51.93 -0.40 -0.48 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 36 H 0.03 0.58 7.98 -51.93 -0.41 0.16 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.13 6.55 -51.93 -0.34 0.79 16 39 H 0.40 3.09 8.83 -40.82 -0.36 2.73 16 40 H 0.14 1.58 7.40 -51.93 -0.38 1.20 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -30.88 349.67 -8.96 -39.84 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.64 Total: 2.51 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -1.20 Total: -8.50 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.46 Total: -45.60 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.88 -8.96 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054049921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.029 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds