Wall clock time and date at job start Mon Mar 30 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46969 * 2 1 4 4 H 1.09007 * 109.47341 * 55.00434 * 3 2 1 5 5 C 1.50701 * 109.47277 * 175.00278 * 3 2 1 6 6 H 1.07995 * 120.00226 * 120.00111 * 5 3 2 7 7 C 1.37880 * 119.99691 * 300.00316 * 5 3 2 8 8 N 1.31513 * 120.00256 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99850 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47219 * 60.00069 * 9 7 5 11 11 H 1.48502 * 109.47159 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47031 * 300.00346 * 9 7 5 13 13 N 1.46499 * 109.47441 * 295.00433 * 3 2 1 14 14 C 1.34777 * 119.99867 * 85.00243 * 13 3 2 15 15 O 1.21279 * 119.99933 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99896 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47121 * 179.97438 * 17 16 14 19 19 H 1.09009 * 109.50291 * 54.92412 * 18 17 16 20 20 C 1.53114 * 109.50380 * 174.99928 * 18 17 16 21 21 C 1.53126 * 109.16071 * 177.63874 * 20 18 17 22 22 C 1.53034 * 109.27454 * 302.34640 * 21 20 18 23 23 N 1.46847 * 109.52486 * 59.18079 * 22 21 20 24 24 C 1.46848 * 111.19788 * 298.25416 * 23 22 21 25 25 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47021 * 299.99069 * 1 2 3 27 27 H 1.08992 * 109.47600 * 59.99259 * 1 2 3 28 28 H 1.09004 * 109.46572 * 240.00663 * 2 1 3 29 29 H 1.08992 * 109.47259 * 120.00319 * 2 1 3 30 30 H 0.97005 * 120.00187 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99665 * 264.99747 * 13 3 2 32 32 H 1.08996 * 109.46884 * 59.99583 * 16 14 13 33 33 H 1.08999 * 109.46979 * 300.00127 * 16 14 13 34 34 H 1.08996 * 109.47254 * 60.00213 * 17 16 14 35 35 H 1.08998 * 109.47170 * 299.99862 * 17 16 14 36 36 H 1.09001 * 109.52084 * 57.73312 * 20 18 17 37 37 H 1.09004 * 109.52756 * 297.54013 * 20 18 17 38 38 H 1.08997 * 109.50129 * 62.28942 * 21 20 18 39 39 H 1.09006 * 109.50177 * 182.40700 * 21 20 18 40 40 H 1.08999 * 109.45899 * 179.20018 * 22 21 20 41 41 H 1.09006 * 109.46754 * 299.15875 * 22 21 20 42 42 H 1.00897 * 110.99907 * 62.35214 * 23 22 21 43 43 H 1.09000 * 109.46321 * 301.72950 * 24 23 22 44 44 H 1.08999 * 109.45108 * 181.74821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2156 2.6496 12 1 6.5967 0.1454 0.2341 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3396 2.6319 -0.4341 16 6 0.0365 3.3389 -2.6542 17 6 -1.3828 3.8945 -2.5208 18 6 -1.7871 4.5797 -3.8276 19 1 -1.6690 3.8814 -4.6563 20 6 -3.2491 5.0260 -3.7397 21 6 -3.6281 5.7625 -5.0276 22 6 -2.6859 6.9520 -5.2253 23 7 -1.3001 6.4727 -5.3040 24 6 -0.8983 5.8035 -4.0601 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8294 -0.0612 2.9498 31 1 2.2718 2.1233 -1.9977 32 1 0.0678 2.6149 -3.4684 33 1 0.7279 4.1543 -2.8664 34 1 -1.4145 4.6184 -1.7065 35 1 -2.0739 3.0787 -2.3088 36 1 -3.3755 5.6939 -2.8875 37 1 -3.8900 4.1528 -3.6175 38 1 -3.5390 5.0828 -5.8751 39 1 -4.6552 6.1201 -4.9536 40 1 -2.9440 7.4702 -6.1488 41 1 -2.7857 7.6382 -4.3842 42 1 -1.1724 5.8649 -6.0991 43 1 -1.0065 6.4949 -3.2244 44 1 0.1420 5.4874 -4.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:23 Heat of formation + Delta-G solvation = -72.434621 kcal Electronic energy + Delta-G solvation = -20979.133935 eV Core-core repulsion = 17929.696438 eV Total energy + Delta-G solvation = -3049.437497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.51206 -38.68649 -35.19779 -33.96607 -32.34045 -31.79116 -30.97214 -29.30409 -26.94336 -24.56533 -23.80953 -22.91652 -21.44531 -20.31046 -19.91806 -19.23504 -17.06650 -16.23093 -15.72116 -15.56376 -15.19475 -14.89643 -14.70188 -14.29671 -13.85510 -13.47246 -13.30057 -12.79482 -12.68513 -12.42148 -12.30573 -11.77353 -11.60560 -11.51143 -11.43027 -11.29141 -11.21687 -10.98093 -10.81945 -10.77477 -10.63850 -10.38291 -10.31087 -10.12022 -9.61273 -9.03846 -8.88275 -8.51643 -8.47649 -7.76595 -6.10820 -4.20298 3.26055 3.31417 3.32532 3.49499 4.06092 4.17039 4.38478 4.56164 4.65365 4.77240 4.84866 5.12800 5.19971 5.21510 5.26702 5.37008 5.44687 5.51264 5.61731 5.66438 5.76673 5.83226 5.86726 5.90033 6.06216 6.07675 6.30855 6.40412 6.43567 6.47636 6.68031 6.81005 7.05675 7.16300 7.21963 7.39600 7.51206 7.63993 7.76511 7.93011 8.20567 8.73013 8.80706 9.21326 9.47653 10.94425 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.003547 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.032095 B = 7893.034289 C = 8496.389747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.124 4.124 19 H 0.068 0.932 20 C -0.115 4.115 21 C -0.158 4.158 22 C 0.055 3.945 23 N -0.687 5.687 24 C 0.058 3.942 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.339 0.661 43 H 0.074 0.926 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 8.275 -14.428 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.184 4.184 17 C -0.131 4.131 18 C -0.144 4.144 19 H 0.086 0.914 20 C -0.153 4.153 21 C -0.197 4.197 22 C -0.074 4.074 23 N -0.315 5.315 24 C -0.072 4.072 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.144 8.772 -13.367 18.935 hybrid contribution 0.795 -1.022 -0.318 1.333 sum -9.349 7.750 -13.685 18.297 Atomic orbital electron populations 1.21833 0.98398 0.97908 1.01223 1.21928 0.92574 0.99937 1.02167 1.18744 0.94063 0.89131 0.81255 0.93439 1.21218 0.90839 1.39006 1.06250 0.92187 1.24892 0.98570 0.94839 0.95399 1.69888 1.35193 1.37596 1.09342 0.86524 0.84928 0.78308 0.77430 1.20182 1.21148 1.20183 1.46517 1.14846 1.56134 1.18408 1.20439 0.82635 0.79305 0.89296 1.90657 1.51485 1.60096 1.40886 1.21747 0.98539 1.00978 0.97142 1.21260 0.95206 1.00369 0.96219 1.21922 0.95667 0.98010 0.98823 0.91391 1.21608 0.95970 1.00196 0.97518 1.22272 1.00367 0.98724 0.98335 1.22026 0.86978 0.96259 1.02179 1.60684 1.22092 1.43326 1.05381 1.22193 0.98786 0.93796 0.92411 0.95975 0.93197 0.94287 0.95145 0.88380 0.92537 0.78091 0.89918 0.89524 0.91167 0.91331 0.91702 0.91880 0.92153 0.91615 0.91026 0.90971 0.84416 0.90786 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.40 7.58 -51.92 -0.39 1.00 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.57 5.02 -54.93 -0.28 -14.84 16 14 C 0.50 9.56 6.40 -10.98 -0.07 9.49 16 15 O -0.55 -12.64 13.12 5.56 0.07 -12.57 16 16 C -0.14 -1.93 5.46 -27.88 -0.15 -2.08 16 17 C -0.09 -1.17 3.98 -26.73 -0.11 -1.28 16 18 C -0.12 -1.22 2.33 -90.54 -0.21 -1.43 16 19 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 20 C -0.12 -1.07 5.29 -26.61 -0.14 -1.21 16 21 C -0.16 -1.23 6.08 -26.65 -0.16 -1.39 16 22 C 0.06 0.44 6.55 -3.84 -0.03 0.42 16 23 N -0.69 -6.18 6.87 -113.82 -0.78 -6.96 16 24 C 0.06 0.56 5.58 -3.83 -0.02 0.54 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 6.88 8.54 -40.82 -0.35 6.53 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.02 6.59 -51.93 -0.34 0.68 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.54 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.34 2.66 8.86 -39.29 -0.35 2.31 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.76 6.62 -51.93 -0.34 0.41 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -29.65 338.48 -9.37 -39.01 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.82 Total: 7.95 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.27 Total: -9.09 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.43 Total: -46.03 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.65 -9.37 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.422 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds