Wall clock time and date at job start Mon Mar 30 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.08998 * 109.46773 * 304.99579 * 3 2 1 5 5 C 1.50696 * 109.47040 * 184.99742 * 3 2 1 6 6 H 1.07999 * 119.99741 * 239.99732 * 5 3 2 7 7 C 1.37876 * 120.00359 * 59.99387 * 5 3 2 8 8 N 1.31513 * 119.99673 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00422 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46786 * 90.00477 * 9 7 5 11 11 H 1.48493 * 109.47320 * 210.00437 * 9 7 5 12 12 H 1.48502 * 109.47174 * 330.00802 * 9 7 5 13 13 N 1.46499 * 109.47280 * 64.99521 * 3 2 1 14 14 C 1.34777 * 119.99867 * 275.00372 * 13 3 2 15 15 O 1.21279 * 119.99933 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99896 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47121 * 179.97438 * 17 16 14 19 19 H 1.09009 * 109.50291 * 54.92412 * 18 17 16 20 20 C 1.53114 * 109.50380 * 174.99928 * 18 17 16 21 21 C 1.53126 * 109.16071 * 177.63874 * 20 18 17 22 22 C 1.53034 * 109.27454 * 302.34640 * 21 20 18 23 23 N 1.46847 * 109.52486 * 59.18079 * 22 21 20 24 24 C 1.46848 * 111.19788 * 298.25416 * 23 22 21 25 25 H 1.09002 * 109.47569 * 300.00701 * 1 2 3 26 26 H 1.09007 * 109.46540 * 60.00300 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47045 * 239.99272 * 2 1 3 29 29 H 1.09007 * 109.46540 * 119.99700 * 2 1 3 30 30 H 0.96999 * 120.00289 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99665 * 94.99876 * 13 3 2 32 32 H 1.08996 * 109.46884 * 59.99583 * 16 14 13 33 33 H 1.08999 * 109.46979 * 300.00127 * 16 14 13 34 34 H 1.08996 * 109.47254 * 60.00213 * 17 16 14 35 35 H 1.08998 * 109.47170 * 299.99862 * 17 16 14 36 36 H 1.09001 * 109.52084 * 57.73312 * 20 18 17 37 37 H 1.09000 * 109.57760 * 297.57082 * 20 18 17 38 38 H 1.08997 * 109.50129 * 62.28942 * 21 20 18 39 39 H 1.09006 * 109.50177 * 182.40700 * 21 20 18 40 40 H 1.08999 * 109.45899 * 179.20018 * 22 21 20 41 41 H 1.09006 * 109.46754 * 299.15875 * 22 21 20 42 42 H 1.00897 * 110.99907 * 62.35214 * 23 22 21 43 43 H 1.09000 * 109.46321 * 301.72950 * 24 23 22 44 44 H 1.08999 * 109.45108 * 181.74821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4063 0.3372 -2.1731 9 14 6.0050 0.8809 -1.3815 10 1 6.5548 -0.3506 -0.7598 11 1 6.3831 0.9220 -2.8169 12 1 6.5571 2.0735 -0.6899 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3392 2.6327 0.4339 16 6 0.0361 3.3378 2.6546 17 6 -1.3826 3.8947 2.5207 18 6 -1.7878 4.5778 3.8284 19 1 -1.0464 5.3331 4.0895 20 6 -3.1560 5.2430 3.6550 21 6 -3.5805 5.8733 4.9844 22 6 -3.6114 4.7934 6.0684 23 7 -2.2796 4.1881 6.1962 24 6 -1.8707 3.5355 4.9459 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8294 -0.0607 -2.9500 31 1 2.2719 2.1232 1.9977 32 1 0.7276 4.1530 2.8677 33 1 0.0671 2.6132 3.4683 34 1 -2.0742 3.0798 2.3075 35 1 -1.4131 4.6195 1.7072 36 1 -3.8897 4.4945 3.3560 37 1 -3.0917 6.0163 2.8895 38 1 -2.8673 6.6489 5.2636 39 1 -4.5729 6.3116 4.8789 40 1 -3.8995 5.2416 7.0193 41 1 -4.3349 4.0252 5.7952 42 1 -1.5977 4.8727 6.4867 43 1 -2.6023 2.7732 4.6779 44 1 -0.8944 3.0703 5.0817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054179863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:25 Heat of formation + Delta-G solvation = -72.506673 kcal Electronic energy + Delta-G solvation = -20997.026174 eV Core-core repulsion = 17947.585553 eV Total energy + Delta-G solvation = -3049.440621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51366 -38.68670 -35.19757 -33.96708 -32.34231 -31.79249 -30.97062 -29.30205 -26.94565 -24.56729 -23.81204 -22.91521 -21.44541 -20.31474 -19.91466 -19.23443 -17.07132 -16.20280 -15.78818 -15.51640 -15.23219 -14.90816 -14.65768 -14.27594 -13.87273 -13.59035 -13.09396 -12.94051 -12.68647 -12.41240 -12.18401 -11.94416 -11.58059 -11.48247 -11.39051 -11.29684 -11.22701 -10.98269 -10.82360 -10.76243 -10.63780 -10.41032 -10.30340 -10.10602 -9.61032 -9.02837 -8.88231 -8.52149 -8.48229 -7.76477 -6.11197 -4.20560 3.24329 3.31325 3.33355 3.49488 4.05954 4.16717 4.38231 4.55994 4.65265 4.77187 4.84685 5.12688 5.19471 5.21603 5.26353 5.36836 5.44615 5.50946 5.61619 5.66180 5.76870 5.83015 5.86495 5.89861 6.06271 6.07455 6.30901 6.41355 6.43429 6.48389 6.68748 6.80548 7.06430 7.15821 7.22424 7.40020 7.51321 7.64137 7.76594 7.93053 8.20661 8.73014 8.80640 9.21309 9.47440 10.94096 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.003442 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.780387 B = 8131.839839 C = 8380.830007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.092 4.092 18 C -0.124 4.124 19 H 0.068 0.932 20 C -0.115 4.115 21 C -0.158 4.158 22 C 0.055 3.945 23 N -0.687 5.687 24 C 0.058 3.942 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.339 0.661 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 8.085 14.521 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.184 4.184 17 C -0.131 4.131 18 C -0.144 4.144 19 H 0.086 0.914 20 C -0.153 4.153 21 C -0.197 4.197 22 C -0.074 4.074 23 N -0.315 5.315 24 C -0.072 4.072 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.765 7.353 13.945 19.090 hybrid contribution 1.570 0.779 -0.398 1.797 sum -9.195 8.132 13.547 18.281 Atomic orbital electron populations 1.21833 0.98375 0.97933 1.01225 1.21929 0.92600 0.99902 1.02177 1.18748 0.94070 0.89157 0.81250 0.93454 1.21251 0.90845 1.38904 1.06232 0.92158 1.24893 0.98569 0.94865 0.95407 1.69897 1.35088 1.37668 1.09340 0.86466 0.84956 0.78424 0.77357 1.20554 1.21093 1.19890 1.46516 1.14842 1.56140 1.18405 1.20439 0.82631 0.79314 0.89291 1.90657 1.51505 1.60097 1.40868 1.21747 0.98398 1.01049 0.97215 1.21260 0.95231 1.00515 0.96046 1.21922 0.97106 0.98461 0.96943 0.91363 1.21606 0.96807 0.99998 0.96883 1.22272 1.01744 0.98969 0.96718 1.22025 0.91816 0.95852 0.97744 1.60685 1.04149 1.35276 1.31379 1.22189 1.01671 0.96193 0.87107 0.94248 0.93223 0.95950 0.88391 0.95120 0.92596 0.78090 0.89834 0.89606 0.91204 0.91294 0.91722 0.91862 0.92141 0.91614 0.91024 0.90981 0.84402 0.90815 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.71 -14.56 5.02 -54.93 -0.28 -14.84 16 14 C 0.50 9.56 6.40 -10.98 -0.07 9.49 16 15 O -0.55 -12.64 13.12 5.56 0.07 -12.57 16 16 C -0.14 -1.93 5.46 -27.88 -0.15 -2.08 16 17 C -0.09 -1.17 3.98 -26.73 -0.11 -1.27 16 18 C -0.12 -1.22 2.33 -90.54 -0.21 -1.43 16 19 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 20 C -0.12 -1.07 5.29 -26.61 -0.14 -1.21 16 21 C -0.16 -1.23 6.08 -26.65 -0.16 -1.39 16 22 C 0.06 0.44 6.55 -3.84 -0.03 0.42 16 23 N -0.69 -6.14 6.87 -113.82 -0.78 -6.92 16 24 C 0.06 0.56 5.58 -3.83 -0.02 0.54 16 25 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.88 8.54 -40.82 -0.35 6.53 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.00 6.59 -51.93 -0.34 0.66 16 34 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.34 2.65 8.86 -39.29 -0.35 2.30 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.75 6.62 -51.93 -0.34 0.40 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -29.66 338.49 -9.36 -39.03 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.82 Total: 7.88 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.27 Total: -9.09 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.43 Total: -45.97 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.66 -9.36 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.481 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds