Wall clock time and date at job start Mon Mar 30 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47336 * 2 1 4 4 H 1.08998 * 109.46773 * 304.99579 * 3 2 1 5 5 C 1.50696 * 109.47040 * 184.99742 * 3 2 1 6 6 H 1.07999 * 119.99741 * 239.99732 * 5 3 2 7 7 C 1.37876 * 120.00359 * 59.99387 * 5 3 2 8 8 N 1.31513 * 119.99673 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00422 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46786 * 90.00477 * 9 7 5 11 11 H 1.48493 * 109.47320 * 210.00437 * 9 7 5 12 12 H 1.48502 * 109.47174 * 330.00802 * 9 7 5 13 13 N 1.46499 * 109.47280 * 64.99521 * 3 2 1 14 14 C 1.34777 * 119.99867 * 275.00372 * 13 3 2 15 15 O 1.21279 * 119.99933 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99896 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47121 * 179.97438 * 17 16 14 19 19 H 1.09009 * 109.50291 * 54.92412 * 18 17 16 20 20 C 1.53114 * 109.50380 * 174.99928 * 18 17 16 21 21 C 1.53126 * 109.16071 * 177.63874 * 20 18 17 22 22 C 1.53034 * 109.27454 * 302.34640 * 21 20 18 23 23 N 1.46847 * 109.52486 * 59.18079 * 22 21 20 24 24 C 1.46848 * 111.19788 * 298.25416 * 23 22 21 25 25 H 1.09002 * 109.47569 * 300.00701 * 1 2 3 26 26 H 1.09007 * 109.46540 * 60.00300 * 1 2 3 27 27 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47045 * 239.99272 * 2 1 3 29 29 H 1.09007 * 109.46540 * 119.99700 * 2 1 3 30 30 H 0.96999 * 120.00289 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99665 * 94.99876 * 13 3 2 32 32 H 1.08996 * 109.46884 * 59.99583 * 16 14 13 33 33 H 1.08999 * 109.46979 * 300.00127 * 16 14 13 34 34 H 1.08996 * 109.47254 * 60.00213 * 17 16 14 35 35 H 1.08998 * 109.47170 * 299.99862 * 17 16 14 36 36 H 1.09001 * 109.52084 * 57.73312 * 20 18 17 37 37 H 1.09000 * 109.57760 * 297.57082 * 20 18 17 38 38 H 1.08997 * 109.50129 * 62.28942 * 21 20 18 39 39 H 1.09006 * 109.50177 * 182.40700 * 21 20 18 40 40 H 1.08999 * 109.45899 * 179.20018 * 22 21 20 41 41 H 1.09006 * 109.46754 * 299.15875 * 22 21 20 42 42 H 1.00897 * 110.99907 * 62.35214 * 23 22 21 43 43 H 1.09000 * 109.46321 * 301.72950 * 24 23 22 44 44 H 1.08999 * 109.45108 * 181.74821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4063 0.3372 -2.1731 9 14 6.0050 0.8809 -1.3815 10 1 6.5548 -0.3506 -0.7598 11 1 6.3831 0.9220 -2.8169 12 1 6.5571 2.0735 -0.6899 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3392 2.6327 0.4339 16 6 0.0361 3.3378 2.6546 17 6 -1.3826 3.8947 2.5207 18 6 -1.7878 4.5778 3.8284 19 1 -1.0464 5.3331 4.0895 20 6 -3.1560 5.2430 3.6550 21 6 -3.5805 5.8733 4.9844 22 6 -3.6114 4.7934 6.0684 23 7 -2.2796 4.1881 6.1962 24 6 -1.8707 3.5355 4.9459 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8294 -0.0607 -2.9500 31 1 2.2719 2.1232 1.9977 32 1 0.7276 4.1530 2.8677 33 1 0.0671 2.6132 3.4683 34 1 -2.0742 3.0798 2.3075 35 1 -1.4131 4.6195 1.7072 36 1 -3.8897 4.4945 3.3560 37 1 -3.0917 6.0163 2.8895 38 1 -2.8673 6.6489 5.2636 39 1 -4.5729 6.3116 4.8789 40 1 -3.8995 5.2416 7.0193 41 1 -4.3349 4.0252 5.7952 42 1 -1.5977 4.8727 6.4867 43 1 -2.6023 2.7732 4.6779 44 1 -0.8944 3.0703 5.0817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054179863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:25 Heat of formation + Delta-G solvation = -92.655268 kcal Electronic energy + Delta-G solvation = -20997.899883 eV Core-core repulsion = 17947.585553 eV Total energy + Delta-G solvation = -3050.314330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79822 -39.79122 -36.99389 -35.02044 -34.25983 -32.86502 -32.43040 -30.40226 -28.81304 -25.77227 -24.73318 -24.50276 -22.51283 -21.56274 -21.06276 -20.93581 -18.82464 -17.42167 -17.17510 -16.92224 -16.61940 -16.10467 -15.85659 -15.54810 -15.03191 -14.68178 -14.52580 -14.33758 -14.10365 -13.59657 -13.35647 -13.21331 -13.13827 -12.99492 -12.85556 -12.65946 -12.53582 -12.20314 -12.16671 -12.10854 -12.04150 -11.69907 -11.58155 -11.48097 -11.16240 -11.03246 -10.60324 -10.44667 -9.56900 -9.21112 -8.15771 -6.33272 1.44422 1.45010 1.55448 1.95882 2.37508 2.74309 3.13471 3.43450 3.75742 3.84125 3.95266 4.11790 4.12860 4.33857 4.40637 4.49242 4.51432 4.57494 4.58224 4.68293 4.73563 4.76800 4.82795 4.99534 5.02814 5.06204 5.08421 5.14804 5.21613 5.26034 5.28508 5.35127 5.44951 5.49374 5.57224 5.67233 5.81213 5.96338 6.12100 6.18772 6.55840 6.76180 7.07528 7.34890 7.68383 8.89512 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.003442 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.780387 B = 8131.839839 C = 8380.830007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.709 5.709 14 C 0.491 3.509 15 O -0.594 6.594 16 C -0.129 4.129 17 C -0.086 4.086 18 C -0.112 4.112 19 H 0.079 0.921 20 C -0.118 4.118 21 C -0.151 4.151 22 C 0.055 3.945 23 N -0.692 5.692 24 C 0.061 3.939 25 H 0.046 0.954 26 H 0.023 0.977 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.347 0.653 43 H 0.062 0.938 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 8.815 17.077 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.358 5.358 14 C 0.279 3.721 15 O -0.476 6.476 16 C -0.169 4.169 17 C -0.125 4.125 18 C -0.132 4.132 19 H 0.098 0.902 20 C -0.156 4.156 21 C -0.190 4.190 22 C -0.074 4.074 23 N -0.320 5.320 24 C -0.069 4.069 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.166 0.834 43 H 0.080 0.920 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.000 8.102 16.551 20.966 hybrid contribution 1.267 0.573 -1.213 1.845 sum -8.733 8.676 15.338 19.667 Atomic orbital electron populations 1.21669 0.97006 0.99026 1.00246 1.21780 0.93728 0.99307 1.01170 1.18315 0.93495 0.89123 0.81734 0.98785 1.21612 0.91586 1.38791 1.06649 0.91039 1.25792 1.03347 0.94440 0.95053 1.70056 1.37063 1.38456 1.09881 0.85372 0.79123 0.78893 0.77105 1.19661 1.21351 1.18846 1.46312 1.15933 1.56237 1.17361 1.21469 0.81444 0.78385 0.90771 1.90646 1.52547 1.61402 1.42976 1.21739 0.99005 1.01882 0.94227 1.21191 0.94557 0.99611 0.97152 1.21817 0.97584 0.98548 0.95255 0.90218 1.21620 0.96373 0.99718 0.97875 1.22216 1.02377 0.98904 0.95480 1.22056 0.91245 0.95682 0.98462 1.60677 1.04755 1.35873 1.30730 1.22123 1.01653 0.95842 0.87251 0.93540 0.95820 0.93696 0.91235 0.94062 0.92663 0.76207 0.87268 0.86859 0.92978 0.93255 0.92659 0.92317 0.91443 0.90788 0.89621 0.91739 0.83449 0.91985 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.97 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.27 2.24 44.24 0.10 14.37 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.84 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.87 11.29 21.45 0.24 -52.63 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 N -0.71 -28.73 5.02 -446.10 -2.24 -30.97 16 14 C 0.49 18.69 6.40 87.66 0.56 19.25 16 15 O -0.59 -27.96 13.12 -3.03 -0.04 -28.00 16 16 C -0.13 -3.19 5.46 29.85 0.16 -3.03 16 17 C -0.09 -2.12 3.98 30.59 0.12 -2.00 16 18 C -0.11 -1.99 2.33 -10.74 -0.03 -2.01 16 19 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 20 C -0.12 -2.05 5.29 30.67 0.16 -1.89 16 21 C -0.15 -2.01 6.08 30.65 0.19 -1.82 16 22 C 0.06 0.75 6.55 86.32 0.57 1.32 16 23 N -0.69 -10.58 6.87 -514.01 -3.53 -14.11 16 24 C 0.06 1.04 5.58 86.32 0.48 1.52 16 25 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 26 H 0.02 1.16 7.85 -2.38 -0.02 1.14 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 3.89 5.95 -2.39 -0.01 3.87 16 29 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.40 13.64 8.54 -92.71 -0.79 12.85 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.11 2.26 6.59 -2.39 -0.02 2.24 16 34 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.35 4.36 8.86 -89.70 -0.79 3.56 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.33 6.62 -2.39 -0.02 1.32 16 Total: -1.00 -65.99 338.49 -0.38 -66.37 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.61 Total: 27.94 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 3.77 Total: -12.77 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -5.53 Total: -97.70 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -65.99 -0.38 -66.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054179863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.285 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds