Wall clock time and date at job start Mon Mar 30 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47525 * 2 1 4 4 H 1.09003 * 109.46983 * 55.00195 * 3 2 1 5 5 C 1.50698 * 109.47388 * 175.00147 * 3 2 1 6 6 H 1.08002 * 120.00064 * 119.99948 * 5 3 2 7 7 C 1.37883 * 119.99990 * 300.00014 * 5 3 2 8 8 N 1.31510 * 120.00164 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99852 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47366 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46947 * 120.00223 * 9 7 5 12 12 H 1.48504 * 109.47189 * 240.00093 * 9 7 5 13 13 N 1.46496 * 109.47280 * 295.00186 * 3 2 1 14 14 C 1.34778 * 120.00244 * 84.99731 * 13 3 2 15 15 O 1.21288 * 119.99480 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00366 * 180.02562 * 14 13 3 17 17 C 1.53011 * 109.47315 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47317 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.45251 * 305.02946 * 18 17 16 20 20 C 1.53030 * 109.46276 * 185.05259 * 18 17 16 21 21 C 1.53123 * 109.28009 * 180.80267 * 20 18 17 22 22 C 1.53118 * 109.15585 * 57.65675 * 21 20 18 23 23 C 1.53036 * 109.28007 * 302.34276 * 22 21 20 24 24 N 1.46846 * 109.52162 * 59.18140 * 23 22 21 25 25 H 1.09000 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46676 * 299.99680 * 1 2 3 27 27 H 1.08999 * 109.46904 * 59.99660 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99875 * 2 1 3 29 29 H 1.09000 * 109.47427 * 120.00333 * 2 1 3 30 30 H 0.97000 * 120.00198 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00526 * 264.99710 * 13 3 2 32 32 H 1.09001 * 109.47442 * 60.00412 * 16 14 13 33 33 H 1.08998 * 109.47431 * 300.00060 * 16 14 13 34 34 H 1.09001 * 109.46529 * 59.99852 * 17 16 14 35 35 H 1.08998 * 109.46919 * 300.00373 * 17 16 14 36 36 H 1.09003 * 109.50272 * 60.86554 * 20 18 17 37 37 H 1.08997 * 109.53617 * 300.76537 * 20 18 17 38 38 H 1.08993 * 109.52379 * 297.75279 * 21 20 18 39 39 H 1.08996 * 109.52598 * 177.55713 * 21 20 18 40 40 H 1.09008 * 109.50062 * 182.40805 * 22 21 20 41 41 H 1.09000 * 109.50693 * 62.28496 * 22 21 20 42 42 H 1.08998 * 109.46728 * 299.16963 * 23 22 21 43 43 H 1.09004 * 109.46553 * 179.19847 * 23 22 21 44 44 H 1.00904 * 111.00089 * 62.35801 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1434 0.8782 1.2280 8 7 3.4064 0.3364 2.1728 9 14 6.0051 0.8798 1.3810 10 1 6.5990 1.5439 0.1929 11 1 6.4001 1.6154 2.6091 12 1 6.4963 -0.5193 1.4625 13 7 1.6526 2.0974 -1.2517 14 6 0.4353 2.6644 -1.3669 15 8 -0.3391 2.6327 -0.4340 16 6 0.0364 3.3377 -2.6547 17 6 -1.3824 3.8948 -2.5209 18 6 -1.7871 4.5789 -3.8281 19 1 -1.0456 5.3346 -4.0871 20 6 -3.1540 5.2446 -3.6533 21 6 -3.5639 5.9107 -4.9697 22 6 -3.5872 4.8569 -6.0802 23 6 -2.2078 4.2024 -6.1848 24 7 -1.8619 3.5790 -4.9010 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0621 2.9494 31 1 2.2720 2.1232 -1.9977 32 1 0.0673 2.6131 -3.4684 33 1 0.7278 4.1530 -2.8678 34 1 -1.4128 4.6195 -1.7073 35 1 -2.0741 3.0798 -2.3075 36 1 -3.0941 5.9977 -2.8676 37 1 -3.8937 4.4920 -3.3805 38 1 -2.8456 6.6905 -5.2225 39 1 -4.5562 6.3490 -4.8627 40 1 -3.8368 5.3330 -7.0285 41 1 -4.3333 4.0976 -5.8460 42 1 -1.4642 4.9599 -6.4326 43 1 -2.2249 3.4415 -6.9651 44 1 -2.5148 2.8461 -4.6673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:06 Heat of formation + Delta-G solvation = -71.641896 kcal Electronic energy + Delta-G solvation = -20988.004929 eV Core-core repulsion = 17938.601808 eV Total energy + Delta-G solvation = -3049.403122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.41186 -38.63188 -35.09727 -33.61670 -32.27575 -31.79645 -30.95959 -29.54861 -26.95327 -24.79249 -23.43801 -22.81394 -21.22633 -20.59615 -19.85199 -19.14766 -16.96128 -15.94016 -15.66900 -15.28693 -15.22968 -14.88837 -14.59757 -14.26975 -14.14510 -13.52292 -13.01204 -12.98101 -12.64392 -12.39572 -12.06497 -11.84208 -11.64392 -11.39333 -11.32423 -11.20836 -11.07838 -10.89969 -10.83475 -10.78063 -10.59604 -10.54159 -10.25834 -10.08190 -9.56247 -8.97583 -8.79374 -8.44647 -8.43327 -7.69473 -6.07841 -4.16733 3.26087 3.33935 3.36802 3.60346 4.11022 4.19667 4.40881 4.55502 4.68667 4.76194 4.88521 5.14613 5.20266 5.23521 5.28593 5.37681 5.55389 5.57736 5.60117 5.73217 5.78325 5.84521 5.85929 5.96257 6.05013 6.13310 6.35742 6.45294 6.47227 6.53114 6.73337 6.94964 7.11286 7.26945 7.27979 7.44978 7.58012 7.68804 7.81883 7.97893 8.24973 8.80012 8.85977 9.29177 9.51740 10.97489 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037124 B = 0.003452 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.052158 B = 8110.358645 C = 8361.196737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.497 3.503 15 O -0.556 6.556 16 C -0.134 4.134 17 C -0.092 4.092 18 C 0.087 3.913 19 H 0.080 0.920 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.159 4.159 23 C 0.057 3.943 24 N -0.679 5.679 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 7.832 -15.194 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.436 6.436 16 C -0.174 4.174 17 C -0.130 4.130 18 C -0.023 4.023 19 H 0.098 0.902 20 C -0.192 4.192 21 C -0.157 4.157 22 C -0.198 4.198 23 C -0.073 4.073 24 N -0.308 5.308 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.717 7.699 -14.442 19.563 hybrid contribution 0.310 0.181 -0.114 0.376 sum -10.407 7.880 -14.556 19.552 Atomic orbital electron populations 1.21829 0.98387 0.97857 1.01253 1.21921 0.92605 0.99941 1.02120 1.18735 0.94027 0.89150 0.81361 0.93501 1.21307 0.90916 1.38670 1.06143 0.92099 1.24896 0.98525 0.94909 0.95449 1.69909 1.34955 1.37807 1.09378 0.86422 0.85039 0.77729 0.78070 1.19751 1.20941 1.20921 1.46504 1.14942 1.56182 1.18317 1.20579 0.82522 0.79209 0.89423 1.90646 1.51555 1.60347 1.41038 1.21583 0.97597 1.01281 0.96939 1.21314 0.95986 1.00476 0.95244 1.21665 0.95464 0.93644 0.91563 0.90201 1.22280 0.98628 1.00779 0.97556 1.21556 1.01268 0.97904 0.94982 1.22276 0.99310 0.99149 0.99077 1.22002 0.94511 0.98532 0.92216 1.60683 1.55037 1.12792 1.02299 0.96035 0.93275 0.94151 0.95137 0.88455 0.92703 0.78070 0.88692 0.90148 0.90977 0.91422 0.91290 0.91894 0.91964 0.92240 0.91768 0.92110 0.91053 0.90875 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.16 0.32 -2.79 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.88 2.24 -69.09 -0.15 6.72 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -25.04 11.29 55.43 0.63 -24.42 16 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.93 5.02 -54.94 -0.28 -15.21 16 14 C 0.50 9.78 6.40 -10.99 -0.07 9.71 16 15 O -0.56 -12.90 13.12 5.55 0.07 -12.82 16 16 C -0.13 -1.92 5.59 -27.88 -0.16 -2.07 16 17 C -0.09 -1.20 4.13 -26.73 -0.11 -1.31 16 18 C 0.09 0.89 2.42 -67.73 -0.16 0.72 16 19 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 20 C -0.15 -1.41 5.36 -26.65 -0.14 -1.56 16 21 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 22 C -0.16 -1.18 6.08 -26.65 -0.16 -1.34 16 23 C 0.06 0.46 6.55 -3.84 -0.03 0.44 16 24 N -0.68 -6.60 5.96 -106.77 -0.64 -7.24 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 27 H 0.04 0.89 5.65 -51.93 -0.29 0.60 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 32 H 0.09 1.28 7.75 -51.93 -0.40 0.88 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.34 3.24 8.79 -39.29 -0.35 2.90 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -29.63 341.06 -9.42 -39.05 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.96 Total: 8.43 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.37 Total: -8.73 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.29 Total: -46.86 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.63 -9.42 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.592 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds