Wall clock time and date at job start Mon Mar 30 2020 05:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 H 1.08993 * 109.47116 * 304.99959 * 3 2 1 5 5 C 1.50704 * 109.47294 * 184.99765 * 3 2 1 6 6 H 1.08001 * 119.99995 * 240.00340 * 5 3 2 7 7 C 1.37876 * 119.99789 * 59.99775 * 5 3 2 8 8 N 1.31516 * 119.99810 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99873 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47191 * 59.99994 * 9 7 5 11 11 H 1.48498 * 109.47124 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46850 * 300.00158 * 9 7 5 13 13 N 1.46500 * 109.47249 * 65.00096 * 3 2 1 14 14 C 1.34787 * 119.99748 * 275.00111 * 13 3 2 15 15 O 1.21284 * 119.99849 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00004 * 180.02562 * 14 13 3 17 17 C 1.53001 * 109.47288 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47208 * 179.97438 * 17 16 14 19 19 H 1.08994 * 109.46420 * 305.02040 * 18 17 16 20 20 C 1.53039 * 109.45890 * 185.05261 * 18 17 16 21 21 C 1.53124 * 109.27498 * 180.80501 * 20 18 17 22 22 C 1.53126 * 109.15878 * 57.65601 * 21 20 18 23 23 C 1.53029 * 109.27795 * 302.34185 * 22 21 20 24 24 N 1.46843 * 109.46045 * 65.00221 * 18 17 16 25 25 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47254 * 299.99864 * 1 2 3 27 27 H 1.08999 * 109.47165 * 60.00322 * 1 2 3 28 28 H 1.09001 * 109.47592 * 239.99711 * 2 1 3 29 29 H 1.08999 * 109.47165 * 119.99678 * 2 1 3 30 30 H 0.97003 * 119.99630 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00340 * 94.99644 * 13 3 2 32 32 H 1.09001 * 109.47515 * 59.99242 * 16 14 13 33 33 H 1.09009 * 109.47105 * 299.99813 * 16 14 13 34 34 H 1.09001 * 109.46890 * 59.99545 * 17 16 14 35 35 H 1.08996 * 109.47024 * 299.99667 * 17 16 14 36 36 H 1.08997 * 109.50468 * 60.86826 * 20 18 17 37 37 H 1.09004 * 109.50358 * 300.74398 * 20 18 17 38 38 H 1.08998 * 109.52745 * 297.74929 * 21 20 18 39 39 H 1.08999 * 109.52030 * 177.55385 * 21 20 18 40 40 H 1.08994 * 109.50285 * 62.28827 * 22 21 20 41 41 H 1.08998 * 109.50137 * 182.36505 * 22 21 20 42 42 H 1.08999 * 109.46487 * 179.19278 * 23 22 21 43 43 H 1.09001 * 109.46656 * 299.16371 * 23 22 21 44 44 H 1.00894 * 110.99997 * 305.84966 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5967 0.1454 -0.2341 11 1 6.3979 0.2168 -2.6502 12 1 6.5004 2.2800 -1.3806 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6326 0.4340 16 6 0.0365 3.3387 2.6543 17 6 -1.3823 3.8954 2.5206 18 6 -1.7871 4.5794 3.8280 19 1 -1.6707 3.8794 4.6553 20 6 -3.2485 5.0249 3.7390 21 6 -3.6432 5.7266 5.0415 22 6 -2.7046 6.9132 5.2775 23 6 -1.2590 6.4129 5.3218 24 7 -0.9300 5.7502 4.0533 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0604 -2.9501 31 1 2.2719 2.1231 1.9978 32 1 0.7280 4.1541 2.8666 33 1 0.0679 2.6146 3.4686 34 1 -2.0739 3.0801 2.3082 35 1 -1.4132 4.6195 1.7066 36 1 -3.8859 4.1538 3.5874 37 1 -3.3685 5.7144 2.9034 38 1 -3.5605 5.0259 5.8724 39 1 -4.6701 6.0840 4.9660 40 1 -2.8161 7.6324 4.4661 41 1 -2.9539 7.3916 6.2246 42 1 -0.5870 7.2573 5.4754 43 1 -1.1449 5.7043 6.1421 44 1 0.0458 5.4956 4.0209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054180163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:08 Heat of formation + Delta-G solvation = -89.186421 kcal Electronic energy + Delta-G solvation = -20976.646891 eV Core-core repulsion = 17926.482982 eV Total energy + Delta-G solvation = -3050.163910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76683 -39.60581 -36.97133 -34.75616 -34.24899 -32.83771 -32.71716 -30.62637 -28.86402 -26.08155 -24.87977 -24.11156 -22.44715 -21.52097 -20.94533 -20.56327 -18.86433 -17.70659 -17.19711 -16.91461 -16.73595 -16.05472 -15.83678 -15.20732 -14.90616 -14.61936 -14.58104 -14.35222 -14.16669 -13.89214 -13.61438 -13.25606 -13.16237 -12.92669 -12.78674 -12.64860 -12.62980 -12.18325 -12.08495 -11.99617 -11.78152 -11.63072 -11.56751 -11.27597 -11.14397 -11.03696 -10.59527 -10.44337 -9.56446 -9.30123 -8.15075 -6.32671 1.44831 1.46783 1.54489 1.95778 2.37915 2.73753 3.14071 3.27795 3.81491 3.87080 4.03710 4.09603 4.21596 4.28540 4.44046 4.49555 4.51539 4.58005 4.58099 4.70789 4.71846 4.81089 4.89028 4.94133 5.03563 5.07677 5.10575 5.15047 5.24849 5.27557 5.32227 5.40470 5.45498 5.53211 5.57602 5.67592 5.81715 5.96835 6.19118 6.20451 6.53701 6.76477 7.07641 7.35376 7.68555 8.90013 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033611 B = 0.003559 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.865950 B = 7865.263020 C = 8471.337298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.271 1.271 13 N -0.709 5.709 14 C 0.494 3.506 15 O -0.592 6.592 16 C -0.128 4.128 17 C -0.089 4.089 18 C 0.097 3.903 19 H 0.047 0.953 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.118 4.118 23 C 0.056 3.944 24 N -0.699 5.699 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.035 0.965 44 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 8.803 17.809 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.358 5.358 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.168 4.168 17 C -0.128 4.128 18 C -0.012 4.012 19 H 0.065 0.935 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.073 4.073 24 N -0.333 5.333 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.506 9.098 16.599 21.182 hybrid contribution 1.530 -0.801 0.086 1.729 sum -7.976 8.297 16.685 20.269 Atomic orbital electron populations 1.21669 0.96981 0.99040 1.00265 1.21777 0.93749 0.99287 1.01165 1.18313 0.93482 0.89125 0.81716 0.98789 1.21588 0.91597 1.38872 1.06691 0.91029 1.25792 1.03346 0.94418 0.95051 1.70053 1.37137 1.38410 1.09844 0.85430 0.79111 0.78447 0.77541 1.18846 1.21283 1.19659 1.46299 1.15875 1.56266 1.17360 1.21364 0.81498 0.78351 0.90651 1.90652 1.52546 1.61281 1.42866 1.21685 0.99149 1.01527 0.94469 1.21284 0.94689 0.99358 0.97431 1.21414 0.93674 0.90550 0.95601 0.93492 1.21637 0.94697 1.00474 0.98562 1.21574 0.99550 0.97544 0.96956 1.21604 0.94099 0.97772 1.02111 1.21968 0.97487 0.98368 0.89436 1.60326 1.08519 1.28677 1.35751 0.93666 0.93545 0.95795 0.91228 0.94071 0.92655 0.76239 0.87367 0.87128 0.92028 0.92833 0.91336 0.92499 0.91738 0.91180 0.92296 0.90234 0.90118 0.94722 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.30 2.24 44.25 0.10 14.40 16 4 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 5 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.95 11.29 21.45 0.24 -52.70 16 9 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 N -0.71 -28.74 5.02 -446.09 -2.24 -30.98 16 14 C 0.49 18.89 6.40 87.65 0.56 19.45 16 15 O -0.59 -28.02 13.12 -3.04 -0.04 -28.06 16 16 C -0.13 -3.24 5.47 29.85 0.16 -3.08 16 17 C -0.09 -2.30 4.18 30.59 0.13 -2.17 16 18 C 0.10 1.93 2.50 44.94 0.11 2.04 16 19 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 20 C -0.12 -2.20 5.37 30.65 0.16 -2.04 16 21 C -0.12 -1.78 6.00 30.68 0.18 -1.60 16 22 C -0.12 -1.71 6.09 30.65 0.19 -1.53 16 23 C 0.06 0.85 6.55 86.32 0.57 1.42 16 24 N -0.70 -13.19 6.50 -491.69 -3.20 -16.39 16 25 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 27 H 0.02 1.17 7.85 -2.39 -0.02 1.15 16 28 H 0.07 3.89 5.95 -2.39 -0.01 3.87 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.40 13.62 8.54 -92.71 -0.79 12.83 16 32 H 0.11 2.28 6.64 -2.39 -0.02 2.26 16 33 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.35 5.95 7.00 -89.70 -0.63 5.32 16 Total: -1.00 -66.23 338.74 -0.04 -66.27 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.44 Total: 29.30 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.62 Total: -11.63 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -5.20 Total: -100.06 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.04 Total: -28.06 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -66.23 -0.04 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.917 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds