Wall clock time and date at job start Mon Mar 30 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46981 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.46939 * 180.02562 * 17 16 14 19 19 H 1.09002 * 109.46880 * 54.97926 * 18 17 16 20 20 C 1.53035 * 109.46142 * 174.94895 * 18 17 16 21 21 C 1.53123 * 109.27902 * 179.19298 * 20 18 17 22 22 C 1.53121 * 109.16025 * 302.34520 * 21 20 18 23 23 C 1.53032 * 109.27832 * 57.65309 * 22 21 20 24 24 N 1.46847 * 109.52592 * 300.81953 * 23 22 21 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 31 31 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 32 32 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 33 33 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 34 34 H 1.08999 * 109.47408 * 300.00136 * 17 16 14 35 35 H 1.08999 * 109.46846 * 60.00007 * 17 16 14 36 36 H 1.08997 * 109.50306 * 299.13081 * 20 18 17 37 37 H 1.08996 * 109.50822 * 59.25519 * 20 18 17 38 38 H 1.08996 * 109.52399 * 182.43954 * 21 20 18 39 39 H 1.09005 * 109.57776 * 62.28161 * 21 20 18 40 40 H 1.09005 * 109.50209 * 297.70777 * 22 21 20 41 41 H 1.09002 * 109.50406 * 177.59704 * 22 21 20 42 42 H 1.08998 * 109.46229 * 180.80437 * 23 22 21 43 43 H 1.09000 * 109.45325 * 60.83192 * 23 22 21 44 44 H 1.00891 * 111.00348 * 185.84058 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 6 -1.3523 3.8846 -2.5713 18 6 -1.7415 4.5631 -3.8862 19 1 -1.6153 3.8597 -4.7092 20 6 -3.2038 5.0089 -3.8165 21 6 -3.5831 5.7052 -5.1265 22 6 -2.6417 6.8908 -5.3563 23 6 -1.1957 6.3904 -5.3813 24 7 -0.8817 5.7331 -4.1063 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4384 31 1 2.2954 2.1150 -1.9977 32 1 0.7620 4.1421 -2.8933 33 1 0.1091 2.6000 -3.4965 34 1 -2.0464 3.0703 -2.3637 35 1 -1.3928 4.6121 -1.7606 36 1 -3.8430 4.1385 -3.6688 37 1 -3.3338 5.7019 -2.9853 38 1 -4.6108 6.0627 -5.0647 39 1 -3.4913 5.0015 -5.9539 40 1 -2.7629 7.6134 -4.5493 41 1 -2.8793 7.3648 -6.3086 42 1 -0.5220 7.2341 -5.5305 43 1 -1.0721 5.6783 -6.1972 44 1 0.0936 5.4787 -4.0612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054180165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:12 Heat of formation + Delta-G solvation = -69.991765 kcal Electronic energy + Delta-G solvation = -21047.271420 eV Core-core repulsion = 17997.939853 eV Total energy + Delta-G solvation = -3049.331567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.49485 -38.67768 -35.33781 -33.78932 -32.42788 -32.04917 -31.45469 -29.64248 -27.20903 -24.99486 -23.46662 -22.35899 -21.43796 -20.08466 -19.85770 -19.43852 -17.78821 -16.84512 -15.92286 -15.72721 -15.30586 -14.75673 -14.47515 -14.07932 -13.72052 -13.51368 -13.40601 -13.24409 -12.94840 -12.58835 -12.40950 -12.19919 -11.88609 -11.76253 -11.59360 -11.21779 -10.98392 -10.86516 -10.74925 -10.68012 -10.55383 -10.42971 -10.37009 -9.84188 -9.76878 -9.18716 -9.05543 -8.58481 -8.24166 -8.02720 -6.60238 -4.19037 3.32860 3.42423 3.47240 3.63044 3.98990 4.03424 4.45377 4.57777 4.67494 4.72727 4.92163 5.08848 5.11769 5.17133 5.25052 5.30187 5.38935 5.47632 5.55374 5.63724 5.71109 5.75651 5.82218 5.91244 5.99864 6.09559 6.11314 6.14035 6.18834 6.30991 6.42156 6.72541 6.81734 6.92600 7.00183 7.08274 7.22786 7.39566 7.47835 7.71882 8.25537 8.54828 8.73144 9.05864 9.45748 10.77438 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035335 B = 0.003693 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.227128 B = 7581.072226 C = 7894.025146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.040 0.960 5 C -0.629 4.629 6 H 0.062 0.938 7 C 0.048 3.952 8 N -0.887 5.887 9 Si 1.030 2.970 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.144 4.144 17 C -0.096 4.096 18 C 0.088 3.912 19 H 0.036 0.964 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.118 4.118 23 C 0.058 3.942 24 N -0.686 5.686 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.271 0.729 31 H 0.391 0.609 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 8.292 -13.911 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.057 0.943 5 C -0.666 4.666 6 H 0.080 0.920 7 C -0.160 4.160 8 N -0.519 5.519 9 Si 0.857 3.143 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.184 4.184 17 C -0.134 4.134 18 C -0.021 4.021 19 H 0.054 0.946 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.072 4.072 24 N -0.320 5.320 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.045 0.955 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.879 8.379 -11.238 20.442 hybrid contribution 0.754 -0.359 -2.777 2.900 sum -14.125 8.020 -14.016 21.454 Atomic orbital electron populations 1.21887 0.97435 0.98735 1.01979 1.22224 0.93665 0.99845 1.01250 1.18974 0.95648 0.88419 0.82316 0.94271 1.21994 0.89852 1.49965 1.04803 0.92025 1.25612 0.96602 0.91661 1.02116 1.70871 1.13937 1.36542 1.30526 0.84219 0.76023 0.77657 0.76421 1.20878 1.20666 1.19935 1.46287 1.14707 1.56209 1.18007 1.20450 0.82522 0.79097 0.89341 1.90653 1.50791 1.59988 1.41649 1.21714 0.98921 1.00832 0.96980 1.21380 0.94938 1.00310 0.96777 1.21543 0.93338 0.90332 0.96916 0.94611 1.21616 0.94890 1.00523 0.98036 1.21584 0.99078 0.97493 0.97769 1.21590 0.94276 0.98074 1.01645 1.21894 0.97160 0.98108 0.90004 1.60335 1.08574 1.29029 1.34038 0.95223 0.93028 0.93267 0.93306 0.91977 0.91916 0.77643 0.89561 0.89987 0.90780 0.90168 0.91571 0.90944 0.91942 0.92486 0.91130 0.91940 0.90932 0.95502 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.11 16 3 C 0.25 5.99 1.84 -69.09 -0.13 5.87 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -17.01 8.92 -34.44 -0.31 -17.31 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.26 16 8 N -0.89 -26.25 13.70 55.43 0.76 -25.49 16 9 Si 1.03 25.22 26.56 -169.99 -4.51 20.70 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.37 6.34 56.52 0.36 -6.01 16 13 N -0.70 -14.04 5.03 -54.93 -0.28 -14.31 16 14 C 0.50 9.23 6.43 -10.98 -0.07 9.16 16 15 O -0.55 -11.97 13.13 5.55 0.07 -11.90 16 16 C -0.14 -1.88 5.47 -27.88 -0.15 -2.03 16 17 C -0.10 -1.21 4.18 -26.73 -0.11 -1.32 16 18 C 0.09 0.92 2.50 -67.72 -0.17 0.75 16 19 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 20 C -0.11 -1.09 5.37 -26.65 -0.14 -1.24 16 21 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 22 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 23 C 0.06 0.50 6.55 -3.84 -0.03 0.47 16 24 N -0.69 -7.00 6.50 -106.76 -0.69 -7.69 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 27 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.48 5.77 -51.93 -0.30 1.18 16 30 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 31 H 0.39 6.94 8.53 -40.82 -0.35 6.60 16 32 H 0.09 1.00 6.64 -51.93 -0.34 0.66 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.34 3.31 7.00 -39.30 -0.28 3.04 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -30.39 336.04 -8.75 -39.14 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.81 Total: 6.89 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.35 Total: -12.41 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.21 Total: -47.50 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -4.51 Total: 20.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.39 -8.75 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054180165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.847 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds