Wall clock time and date at job start Mon Mar 30 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.50698 * 109.46775 * 120.00107 * 2 1 3 5 5 O 1.21280 * 119.99915 * 274.74389 * 4 2 1 6 6 N 1.34782 * 120.00251 * 94.75166 * 4 2 1 7 7 C 1.47074 * 120.88146 * 174.64784 * 6 4 2 8 8 C 1.53236 * 108.52334 * 128.83679 * 7 6 4 9 9 N 1.46897 * 109.33745 * 53.82504 * 8 7 6 10 10 C 1.46905 * 110.99904 * 172.74799 * 9 8 7 11 11 C 1.53001 * 109.47167 * 170.00362 * 10 9 8 12 12 C 1.52994 * 109.47417 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47543 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00173 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00376 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 120.00113 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47273 * 89.99685 * 17 15 13 19 19 H 1.48499 * 109.46961 * 210.00402 * 17 15 13 20 20 H 1.48499 * 109.46764 * 329.99947 * 17 15 13 21 21 C 1.46903 * 111.27482 * 296.89936 * 9 8 7 22 22 C 1.47075 * 120.87736 * 354.66992 * 6 4 2 23 23 H 1.09000 * 109.46762 * 300.00351 * 1 2 3 24 24 H 1.08994 * 109.46671 * 59.99995 * 1 2 3 25 25 H 1.08994 * 109.46700 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46762 * 239.99649 * 2 1 3 27 27 H 1.08996 * 109.46933 * 304.96780 * 3 2 1 28 28 H 1.08999 * 109.47265 * 64.96535 * 3 2 1 29 29 H 1.09000 * 109.46844 * 184.96513 * 3 2 1 30 30 H 1.08996 * 109.63009 * 9.12530 * 7 6 4 31 31 H 1.09002 * 109.78692 * 248.63855 * 7 6 4 32 32 H 1.08998 * 109.49935 * 173.78928 * 8 7 6 33 33 H 1.09004 * 109.49394 * 293.87183 * 8 7 6 34 34 H 1.09005 * 109.47070 * 289.99816 * 10 9 8 35 35 H 1.08994 * 109.47042 * 50.00371 * 10 9 8 36 36 H 1.08998 * 109.47224 * 300.00090 * 11 10 9 37 37 H 1.09001 * 109.47530 * 59.99972 * 11 10 9 38 38 H 1.09001 * 109.47454 * 300.00221 * 12 11 10 39 39 H 1.09005 * 109.47323 * 59.99526 * 12 11 10 40 40 H 0.96997 * 120.00807 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.48491 * 303.14528 * 21 9 8 42 42 H 1.08998 * 109.51508 * 183.07871 * 21 9 8 43 43 H 1.09003 * 109.63382 * 350.87130 * 22 6 4 44 44 H 1.09005 * 109.62941 * 111.45753 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.1525 -0.1043 2.2740 6 7 2.3481 -2.0194 1.1712 7 6 2.9492 -2.7039 2.3258 8 6 2.1418 -3.9742 2.6132 9 7 2.0533 -4.7817 1.3893 10 6 1.4363 -6.0865 1.6628 11 6 1.1335 -6.7947 0.3408 12 6 0.4903 -8.1533 0.6256 13 6 0.1927 -8.8511 -0.6764 14 1 0.4374 -8.3732 -1.6135 15 6 -0.3930 -10.0993 -0.6715 16 7 -0.6533 -10.7081 -1.8078 17 14 -0.8170 -10.9257 0.9492 18 1 -2.1966 -10.5502 1.3504 19 1 -0.7315 -12.3997 0.7905 20 1 0.1402 -10.4842 1.9952 21 6 1.3270 -4.0674 0.3308 22 6 2.1011 -2.8009 -0.0500 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6059 1.9813 -0.8421 28 1 1.7512 1.9300 0.9311 29 1 3.1264 1.4437 -0.0889 30 1 2.9214 -2.0478 3.1957 31 1 3.9820 -2.9697 2.1006 32 1 2.6368 -4.5510 3.3945 33 1 1.1390 -3.7012 2.9421 34 1 2.1211 -6.6957 2.2528 35 1 0.5094 -5.9409 2.2176 36 1 0.4488 -6.1855 -0.2492 37 1 2.0604 -6.9403 -0.2140 38 1 1.1746 -8.7628 1.2159 39 1 -0.4367 -8.0074 1.1803 40 1 -1.0650 -11.5864 -1.8044 41 1 0.3356 -3.7931 0.6916 42 1 1.2307 -4.7115 -0.5432 43 1 1.5125 -2.2089 -0.7509 44 1 3.0516 -3.0764 -0.5070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057590741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:54 Heat of formation + Delta-G solvation = -42.257738 kcal Electronic energy + Delta-G solvation = -20988.814390 eV Core-core repulsion = 17940.685461 eV Total energy + Delta-G solvation = -3048.128929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52170 -38.38978 -35.36627 -34.78724 -33.39269 -31.69279 -31.07005 -28.35211 -27.47856 -25.99707 -24.17719 -23.51195 -22.08675 -20.78837 -19.88293 -18.68434 -17.71706 -16.71291 -16.09658 -15.54255 -15.18999 -15.15091 -14.77614 -14.48448 -14.23747 -14.01792 -13.93597 -13.29929 -12.88292 -12.69525 -12.51795 -12.42315 -12.27026 -11.88764 -11.73676 -11.63115 -11.47223 -11.38703 -11.31442 -11.17196 -10.89494 -10.62284 -10.01093 -9.80706 -9.70947 -9.63638 -9.20501 -8.87556 -8.56202 -8.20538 -6.06725 -4.04869 2.45598 2.79114 3.28554 3.36362 3.39785 3.93237 4.21874 4.43013 4.53910 4.70509 4.76817 4.85810 5.04197 5.04643 5.11124 5.23982 5.27505 5.33232 5.37230 5.44880 5.50766 5.57229 5.59875 5.63155 5.68131 5.73793 5.80917 5.86572 5.93697 5.96426 6.07163 6.31846 6.44713 6.50684 6.81246 7.09641 7.14213 7.25809 7.28639 7.39997 7.77128 8.00622 8.51268 8.97953 9.55914 11.06736 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034040 B = 0.003432 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.359760 B = 8156.104680 C = 8608.389510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.547 6.547 6 N -0.613 5.613 7 C 0.116 3.884 8 C 0.041 3.959 9 N -0.537 5.537 10 C 0.053 3.947 11 C -0.105 4.105 12 C -0.013 4.013 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.032 3.968 22 C 0.109 3.891 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.263 0.737 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 20.587 4.566 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.194 4.194 4 C 0.308 3.692 5 O -0.424 6.424 6 N -0.346 5.346 7 C -0.006 4.006 8 C -0.088 4.088 9 N -0.262 5.262 10 C -0.073 4.073 11 C -0.142 4.142 12 C -0.051 4.051 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.096 4.096 22 C -0.014 4.014 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.762 20.661 4.891 22.000 hybrid contribution -1.141 -0.654 1.012 1.659 sum 4.621 20.007 5.902 21.365 Atomic orbital electron populations 1.21745 0.92458 1.02701 1.03040 1.21340 0.98024 0.97863 0.96580 1.21676 1.01051 0.93748 1.02886 1.20724 0.76700 0.81388 0.90349 1.90659 1.54035 1.65914 1.31832 1.48253 1.62013 1.09116 1.15257 1.21691 0.96825 0.92782 0.89337 1.22461 0.99222 0.94118 0.93012 1.62038 1.52859 1.03807 1.07492 1.22335 0.96875 0.88542 0.99592 1.21632 1.00780 0.97369 0.94465 1.19543 0.95210 0.92553 0.97766 1.21125 1.40054 1.02010 0.92588 0.91038 1.25036 0.95189 0.97154 0.96150 1.69909 1.43569 1.15220 1.25602 0.86774 0.79164 0.78558 0.84755 1.20384 1.21381 1.19009 1.22639 0.94829 0.94797 0.97372 1.22002 1.01189 0.91982 0.86268 0.91845 0.91204 0.92112 0.88941 0.91752 0.91347 0.92526 0.88997 0.90722 0.89613 0.94664 0.90799 0.95276 0.92578 0.91773 0.96547 0.97308 0.92732 0.94569 0.87738 0.89265 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.08 37.16 0.34 -0.80 16 2 C -0.12 -1.02 2.45 -91.77 -0.22 -1.25 16 3 C -0.14 -1.11 8.94 37.16 0.33 -0.78 16 4 C 0.52 6.28 6.70 -10.98 -0.07 6.20 16 5 O -0.55 -8.43 15.62 5.56 0.09 -8.34 16 6 N -0.61 -6.97 3.01 -172.47 -0.52 -7.49 16 7 C 0.12 1.32 6.61 -3.61 -0.02 1.30 16 8 C 0.04 0.49 5.58 -3.70 -0.02 0.47 16 9 N -0.54 -7.25 4.78 -234.32 -1.12 -8.37 16 10 C 0.05 0.83 5.27 -3.82 -0.02 0.81 16 11 C -0.10 -1.96 4.40 -26.73 -0.12 -2.08 16 12 C -0.01 -0.30 4.04 -27.89 -0.11 -0.41 16 13 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 17 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 21 C 0.03 0.39 5.04 -3.70 -0.02 0.38 16 22 C 0.11 1.08 6.28 -3.61 -0.02 1.06 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 26 H 0.09 0.66 6.25 -51.93 -0.32 0.33 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.06 1.03 6.18 -51.93 -0.32 0.71 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 1.34 5.73 -51.93 -0.30 1.05 16 43 H 0.09 0.70 5.49 -51.93 -0.29 0.41 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -32.20 340.14 -8.54 -40.75 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.83 Total: -3.43 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.40 Total: -8.23 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.87 Total: -42.79 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.20 -8.54 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057590741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.510 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds