Wall clock time and date at job start Mon Mar 30 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.08996 * 109.47640 * 54.99175 * 3 2 1 5 5 C 1.50700 * 109.47047 * 174.99887 * 3 2 1 6 6 H 1.08001 * 119.99669 * 120.00087 * 5 3 2 7 7 C 1.37875 * 120.00025 * 299.99428 * 5 3 2 8 8 N 1.31515 * 120.00118 * 180.02562 * 7 5 3 9 9 Si 1.86807 * 119.99831 * 0.02562 * 7 5 3 10 10 H 1.48494 * 109.47083 * 89.99800 * 9 7 5 11 11 H 1.48504 * 109.46681 * 210.00114 * 9 7 5 12 12 H 1.48504 * 109.46848 * 329.99582 * 9 7 5 13 13 N 1.46505 * 109.46671 * 294.99501 * 3 2 1 14 14 C 1.34777 * 119.99935 * 85.00312 * 13 3 2 15 15 O 1.21283 * 120.00126 * 356.00811 * 14 13 3 16 16 C 1.50700 * 120.00138 * 176.00739 * 14 13 3 17 17 C 1.52999 * 109.52088 * 293.93681 * 16 14 13 18 18 C 1.53001 * 109.47355 * 302.37954 * 17 16 14 19 19 C 1.53091 * 109.57541 * 54.10135 * 16 14 13 20 20 C 1.53036 * 109.29266 * 62.27573 * 19 16 14 21 21 N 1.46841 * 109.51445 * 59.18607 * 20 19 16 22 22 C 1.46851 * 111.19613 * 298.25818 * 21 20 19 23 23 C 1.53040 * 109.51829 * 61.74922 * 22 21 20 24 24 H 1.08994 * 109.47694 * 300.00407 * 1 2 3 25 25 H 1.09001 * 109.46777 * 60.00573 * 1 2 3 26 26 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47030 * 239.99337 * 2 1 3 28 28 H 1.09001 * 109.46777 * 119.99427 * 2 1 3 29 29 H 0.96996 * 119.99943 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00078 * 264.99999 * 13 3 2 31 31 H 1.09003 * 109.47198 * 62.38451 * 17 16 14 32 32 H 1.09004 * 109.47041 * 182.37874 * 17 16 14 33 33 H 1.08996 * 109.46824 * 179.42545 * 18 17 16 34 34 H 1.08993 * 109.47305 * 299.42932 * 18 17 16 35 35 H 1.09007 * 109.46388 * 59.42981 * 18 17 16 36 36 H 1.09002 * 109.49385 * 302.33382 * 19 16 14 37 37 H 1.09008 * 109.50744 * 182.22312 * 19 16 14 38 38 H 1.09001 * 109.45940 * 299.17173 * 20 19 16 39 39 H 1.09003 * 109.46182 * 179.19328 * 20 19 16 40 40 H 1.00904 * 110.99939 * 174.16986 * 21 20 19 41 41 H 1.09002 * 109.46555 * 181.75785 * 22 21 20 42 42 H 1.08993 * 109.47034 * 301.74297 * 22 21 20 43 43 H 1.09001 * 109.50629 * 60.75829 * 23 22 21 44 44 H 1.09000 * 109.50311 * 180.88315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8805 1.3364 9 14 3.0962 0.1090 2.5702 10 1 2.8754 -1.3270 2.2636 11 1 3.7935 0.2352 3.8753 12 1 1.7875 0.8076 2.6387 13 7 1.6525 2.0973 -1.2519 14 6 0.4352 2.6642 -1.3672 15 8 -0.3660 2.5697 -0.4616 16 6 0.0695 3.4156 -2.6213 17 6 0.9415 4.6671 -2.7400 18 6 0.7574 5.5371 -1.4950 19 6 0.2939 2.5179 -3.8409 20 6 -0.6251 1.2979 -3.7467 21 7 -2.0242 1.7406 -3.6934 22 6 -2.2752 2.5654 -2.5046 23 6 -1.4053 3.8232 -2.5620 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.8770 0.4821 2.1130 30 1 2.2720 2.1230 -1.9979 31 1 1.9878 4.3741 -2.8271 32 1 0.6477 5.2321 -3.6248 33 1 1.3864 6.4237 -1.5751 34 1 -0.2868 5.8386 -1.4136 35 1 1.0417 4.9687 -0.6094 36 1 1.3331 2.1897 -3.8647 37 1 0.0668 3.0752 -4.7498 38 1 -0.3881 0.7335 -2.8447 39 1 -0.4779 0.6639 -4.6210 40 1 -2.6542 0.9531 -3.7266 41 1 -3.3265 2.8520 -2.4767 42 1 -2.0303 1.9953 -1.6086 43 1 -1.6591 4.4011 -3.4507 44 1 -1.5802 4.4276 -1.6719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062850366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:49 Heat of formation + Delta-G solvation = -50.912707 kcal Electronic energy + Delta-G solvation = -22931.773037 eV Core-core repulsion = 19883.268800 eV Total energy + Delta-G solvation = -3048.504237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57570 -37.40597 -35.26249 -34.52967 -32.39900 -31.53724 -30.55449 -29.76024 -27.51096 -24.73981 -23.11020 -22.86867 -22.12020 -20.80339 -19.93561 -18.94249 -16.89989 -16.54467 -15.80295 -15.45439 -15.19836 -14.62654 -14.43968 -13.92629 -13.70641 -13.63149 -13.16533 -13.03411 -12.90400 -12.32115 -12.12266 -11.97679 -11.85119 -11.70835 -11.59627 -11.37085 -11.16649 -10.98535 -10.97047 -10.79417 -10.63799 -10.16367 -10.07472 -9.92318 -9.53808 -9.22994 -8.92828 -8.75938 -8.26459 -8.01174 -6.22403 -4.24550 3.21181 3.30793 3.33531 3.38358 3.97572 4.29879 4.33524 4.69501 4.85991 4.88819 5.11343 5.29090 5.37253 5.43836 5.44555 5.58912 5.63187 5.71146 5.76491 5.93291 5.95621 5.99768 6.00436 6.06218 6.08297 6.14589 6.19557 6.24952 6.31655 6.39397 6.50145 6.66657 6.68617 6.84483 6.97151 7.09306 7.27715 7.32969 7.40628 7.52984 8.17232 8.56316 8.75922 9.00438 9.39158 10.89712 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.006873 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.310054 B = 4072.747585 C = 4520.300964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.244 3.756 4 H 0.046 0.954 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.700 5.700 14 C 0.517 3.483 15 O -0.549 6.549 16 C -0.081 4.081 17 C -0.108 4.108 18 C -0.156 4.156 19 C -0.105 4.105 20 C 0.051 3.949 21 N -0.690 5.690 22 C 0.045 3.955 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.267 0.733 30 H 0.392 0.608 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.338 0.662 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 3.717 -9.998 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.141 3.859 4 H 0.064 0.936 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.186 1.186 13 N -0.348 5.348 14 C 0.303 3.697 15 O -0.428 6.428 16 C -0.085 4.085 17 C -0.145 4.145 18 C -0.213 4.213 19 C -0.143 4.143 20 C -0.078 4.078 21 N -0.321 5.321 22 C -0.083 4.083 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.892 4.145 -9.611 15.842 hybrid contribution 0.023 -1.249 1.115 1.675 sum -11.869 2.895 -8.497 14.881 Atomic orbital electron populations 1.21950 0.97045 0.98680 1.02433 1.22274 0.94278 1.00124 1.00913 1.19099 0.95476 0.88397 0.82955 0.93621 1.21061 0.88697 1.39670 1.07750 0.90246 1.24832 0.94833 0.95172 0.97650 1.69867 1.08665 1.44549 1.29822 0.86912 0.80953 0.79928 0.80963 1.20331 1.22190 1.18556 1.46183 1.15050 1.55923 1.17613 1.20206 0.82328 0.78982 0.88202 1.90613 1.49572 1.61027 1.41601 1.20973 0.97415 0.95988 0.94084 1.21521 0.99445 0.94693 0.98878 1.21833 1.01567 0.99620 0.98267 1.21646 0.99213 0.96045 0.97367 1.21975 0.88647 0.96403 1.00796 1.60375 1.04617 1.25084 1.42058 1.22111 0.99030 0.95172 0.92031 1.21405 0.91791 0.97274 1.02009 0.92936 0.92581 0.95378 0.92484 0.92951 0.92314 0.77434 0.91281 0.91333 0.92725 0.92530 0.92067 0.91115 0.90465 0.94443 0.90886 0.84542 0.91534 0.92350 0.91393 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.47 37.16 0.31 -2.56 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.17 16 3 C 0.24 5.69 1.83 -69.08 -0.13 5.56 16 4 H 0.05 1.19 6.70 -51.93 -0.35 0.84 16 5 C -0.53 -14.25 9.31 -34.44 -0.32 -14.57 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.88 21.78 24.41 -169.99 -4.15 17.64 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.70 -13.45 4.89 -54.93 -0.27 -13.72 16 14 C 0.52 9.17 2.40 -10.99 -0.03 9.14 16 15 O -0.55 -11.26 10.89 5.55 0.06 -11.20 16 16 C -0.08 -1.12 0.44 -155.55 -0.07 -1.19 16 17 C -0.11 -1.36 4.97 -26.73 -0.13 -1.49 16 18 C -0.16 -2.11 9.34 37.16 0.35 -1.77 16 19 C -0.10 -1.29 4.76 -26.67 -0.13 -1.41 16 20 C 0.05 0.65 6.34 -3.84 -0.02 0.62 16 21 N -0.69 -8.42 6.85 -113.82 -0.78 -9.20 16 22 C 0.05 0.61 6.28 -3.83 -0.02 0.59 16 23 C -0.09 -1.15 4.15 -26.65 -0.11 -1.26 16 24 H 0.05 1.12 7.80 -51.93 -0.41 0.71 16 25 H 0.06 1.09 3.78 -51.93 -0.20 0.89 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.05 1.23 3.21 -51.93 -0.17 1.06 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 6.90 7.48 -40.82 -0.31 6.60 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.72 6.58 -51.93 -0.34 0.38 16 35 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 36 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 37 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.04 0.56 5.76 -51.93 -0.30 0.26 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.34 3.61 8.90 -39.29 -0.35 3.26 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.95 5.74 -51.93 -0.30 0.66 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.05 6.46 -51.93 -0.34 0.72 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -29.64 316.53 -7.32 -36.95 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.19 Total: 9.71 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.53 Total: -9.41 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.27 Total: -48.46 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.06 Total: -11.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.15 Total: 17.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.64 -7.32 -36.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062850366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.959 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds