Wall clock time and date at job start Mon Mar 30 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46734 * 2 1 4 4 H 1.09001 * 109.47133 * 304.99509 * 3 2 1 5 5 C 1.50697 * 109.46807 * 184.99889 * 3 2 1 6 6 H 1.08002 * 120.00280 * 239.99542 * 5 3 2 7 7 C 1.37877 * 120.00436 * 59.99936 * 5 3 2 8 8 N 1.31506 * 120.00435 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99717 * 359.97438 * 7 5 3 10 10 H 1.48494 * 109.47335 * 270.00030 * 9 7 5 11 11 H 1.48507 * 109.47094 * 30.00079 * 9 7 5 12 12 H 1.48503 * 109.47518 * 150.00049 * 9 7 5 13 13 N 1.46498 * 109.47577 * 64.99908 * 3 2 1 14 14 C 1.34782 * 119.99676 * 275.00202 * 13 3 2 15 15 O 1.21274 * 120.00135 * 355.93129 * 14 13 3 16 16 C 1.50703 * 119.99845 * 175.93296 * 14 13 3 17 17 C 1.53004 * 109.52316 * 67.76718 * 16 14 13 18 18 C 1.53000 * 109.46603 * 59.58998 * 17 16 14 19 19 C 1.53123 * 109.52076 * 307.64345 * 16 14 13 20 20 C 1.53171 * 109.21029 * 297.69094 * 19 16 14 21 21 N 1.46851 * 109.55391 * 300.86060 * 20 19 16 22 22 C 1.46846 * 111.19854 * 61.73832 * 21 20 19 23 23 C 1.53034 * 109.52891 * 298.26233 * 22 21 20 24 24 H 1.08998 * 109.47229 * 60.00939 * 1 2 3 25 25 H 1.09010 * 109.47009 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47329 * 299.99745 * 1 2 3 27 27 H 1.09001 * 109.47332 * 239.99699 * 2 1 3 28 28 H 1.09002 * 109.46626 * 119.99472 * 2 1 3 29 29 H 0.97006 * 120.00470 * 180.02562 * 8 7 5 30 30 H 0.96998 * 120.00184 * 94.99430 * 13 3 2 31 31 H 1.08998 * 109.46942 * 179.58718 * 17 16 14 32 32 H 1.08996 * 109.47168 * 299.59454 * 17 16 14 33 33 H 1.09005 * 109.46616 * 185.48779 * 18 17 16 34 34 H 1.08998 * 109.47522 * 305.48814 * 18 17 16 35 35 H 1.09000 * 109.46983 * 65.49701 * 18 17 16 36 36 H 1.09005 * 109.50202 * 57.69141 * 19 16 14 37 37 H 1.08999 * 109.50521 * 177.80717 * 19 16 14 38 38 H 1.08998 * 109.44506 * 180.83896 * 20 19 16 39 39 H 1.08993 * 109.43918 * 60.87931 * 20 19 16 40 40 H 1.00897 * 111.00015 * 185.83858 * 21 20 19 41 41 H 1.09000 * 109.46361 * 178.23692 * 22 21 20 42 42 H 1.09004 * 109.45170 * 58.27135 * 22 21 20 43 43 H 1.09007 * 109.49925 * 299.23771 * 23 22 21 44 44 H 1.09001 * 109.50877 * 179.11946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 5.4539 0.8805 -1.3362 9 14 3.0964 0.1088 -2.5700 10 1 2.8757 -1.3272 -2.2633 11 1 1.7877 0.8072 -2.6386 12 1 3.7937 0.2347 -3.8751 13 7 1.6523 2.0976 1.2517 14 6 0.4349 2.6644 1.3668 15 8 -0.3114 2.6974 0.4115 16 6 0.0012 3.2573 2.6827 17 6 0.8466 4.4951 2.9892 18 6 0.6661 5.5253 1.8725 19 6 0.1865 2.2225 3.7960 20 6 -0.7089 1.0123 3.5134 21 7 -2.1113 1.4432 3.4478 22 6 -2.3216 2.4021 2.3557 23 6 -1.4758 3.6531 2.6034 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 5.8770 0.4827 -2.1131 30 1 2.2718 2.1233 1.9977 31 1 0.5273 4.9275 3.9375 32 1 1.8968 4.2107 3.0548 33 1 1.3410 6.3647 2.0400 34 1 0.8924 5.0631 0.9117 35 1 -0.3639 5.8822 1.8705 36 1 1.2290 1.9060 3.8287 37 1 -0.0905 2.6642 4.7532 38 1 -0.5911 0.2795 4.3116 39 1 -0.4222 0.5631 2.5627 40 1 -2.7292 0.6507 3.3572 41 1 -3.3752 2.6785 2.3130 42 1 -2.0273 1.9460 1.4105 43 1 -1.7790 4.1174 3.5419 44 1 -1.6202 4.3581 1.7847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062850367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:52 Heat of formation + Delta-G solvation = -50.771241 kcal Electronic energy + Delta-G solvation = -22965.863467 eV Core-core repulsion = 19917.365364 eV Total energy + Delta-G solvation = -3048.498102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58884 -37.36228 -35.32893 -34.52501 -32.40579 -31.52789 -30.57461 -29.75892 -27.54396 -24.75733 -23.14068 -22.86556 -22.11447 -20.78351 -19.99239 -18.93709 -16.90668 -16.52846 -15.85641 -15.45438 -15.17878 -14.64189 -14.45003 -13.92444 -13.71704 -13.55137 -13.18646 -13.04976 -12.93482 -12.36125 -12.15184 -11.97857 -11.86493 -11.73269 -11.60424 -11.36405 -11.23534 -11.00050 -10.92396 -10.79949 -10.66098 -10.16184 -10.08337 -9.93910 -9.57110 -9.23450 -8.93197 -8.75818 -8.24444 -8.02570 -6.22303 -4.24393 3.20657 3.30447 3.33395 3.38058 3.97256 4.29793 4.33980 4.69471 4.85572 4.88890 5.11291 5.28965 5.36140 5.42692 5.42975 5.58089 5.62865 5.71036 5.72964 5.92235 5.94320 5.97408 5.99243 6.04609 6.06785 6.10723 6.18900 6.25546 6.28842 6.37959 6.47809 6.63419 6.65577 6.82291 6.92875 7.09983 7.25993 7.32605 7.41307 7.53293 8.17039 8.56062 8.76138 9.00350 9.39154 10.89834 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.006962 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.304559 B = 4020.867560 C = 4503.955896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.261 1.261 12 H -0.294 1.294 13 N -0.700 5.700 14 C 0.519 3.481 15 O -0.551 6.551 16 C -0.082 4.082 17 C -0.108 4.108 18 C -0.156 4.156 19 C -0.104 4.104 20 C 0.045 3.955 21 N -0.690 5.690 22 C 0.045 3.955 23 C -0.087 4.087 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.392 0.608 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.338 0.662 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 3.028 10.090 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.348 5.348 14 C 0.304 3.696 15 O -0.430 6.430 16 C -0.085 4.085 17 C -0.146 4.146 18 C -0.213 4.213 19 C -0.142 4.142 20 C -0.084 4.084 21 N -0.321 5.321 22 C -0.084 4.084 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.226 0.774 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.155 0.845 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.148 3.471 9.744 15.956 hybrid contribution 0.056 -1.169 -1.177 1.660 sum -12.092 2.303 8.567 14.997 Atomic orbital electron populations 1.22015 0.97364 0.99061 1.02289 1.22274 0.94059 1.00215 1.01048 1.19099 0.95559 0.88262 0.83182 0.93400 1.21059 0.88696 1.39641 1.07766 0.90249 1.24830 0.94834 0.95188 0.97641 1.69865 1.08666 1.44573 1.29799 0.86916 0.80984 0.79882 0.80997 1.20337 1.18543 1.22170 1.46176 1.14983 1.55935 1.17720 1.20213 0.82167 0.77923 0.89292 1.90611 1.53465 1.58985 1.39933 1.20992 0.97316 0.96263 0.93942 1.21528 0.99598 0.94303 0.99192 1.21834 1.01484 0.98695 0.99265 1.21668 0.99472 0.95018 0.98044 1.22104 0.88576 0.96757 1.00927 1.60367 1.05577 1.18502 1.47676 1.22103 0.99294 0.93630 0.93330 1.21399 0.91786 0.97412 1.01877 0.92886 0.95033 0.92505 0.92819 0.92383 0.92315 0.77415 0.91270 0.91347 0.92726 0.92037 0.92555 0.91063 0.90526 0.90920 0.93828 0.84542 0.91498 0.92462 0.91371 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.57 37.16 0.32 -2.63 16 2 C -0.14 -3.00 5.11 -26.73 -0.14 -3.14 16 3 C 0.24 5.65 1.84 -69.08 -0.13 5.52 16 4 H 0.05 1.25 6.58 -51.93 -0.34 0.91 16 5 C -0.53 -14.28 9.31 -34.44 -0.32 -14.60 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 9 Si 0.88 21.76 24.41 -169.99 -4.15 17.61 16 10 H -0.28 -6.61 6.83 56.52 0.39 -6.23 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.03 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.70 -13.50 4.83 -54.93 -0.27 -13.76 16 14 C 0.52 9.23 2.27 -10.98 -0.02 9.21 16 15 O -0.55 -11.43 11.61 5.56 0.06 -11.37 16 16 C -0.08 -1.13 0.43 -155.53 -0.07 -1.20 16 17 C -0.11 -1.35 4.98 -26.73 -0.13 -1.48 16 18 C -0.16 -2.07 9.26 37.16 0.34 -1.72 16 19 C -0.10 -1.29 4.76 -26.58 -0.13 -1.42 16 20 C 0.05 0.58 6.35 -3.76 -0.02 0.56 16 21 N -0.69 -8.50 6.85 -113.74 -0.78 -9.27 16 22 C 0.05 0.61 6.28 -3.84 -0.02 0.59 16 23 C -0.09 -1.16 4.10 -26.65 -0.11 -1.26 16 24 H 0.05 1.11 7.91 -51.93 -0.41 0.70 16 25 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.06 1.06 2.65 -51.93 -0.14 0.93 16 27 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 6.91 7.49 -40.82 -0.31 6.61 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.01 7.02 -51.93 -0.36 0.64 16 35 H 0.06 0.69 6.81 -51.93 -0.35 0.34 16 36 H 0.07 0.85 7.19 -51.93 -0.37 0.48 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.66 4.81 -51.93 -0.25 0.41 16 40 H 0.34 3.66 8.90 -39.29 -0.35 3.31 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.94 5.48 -51.93 -0.28 0.66 16 43 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -29.78 314.84 -7.22 -36.99 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.08 Total: 10.09 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.53 Total: -9.48 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.27 Total: -48.60 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.06 Total: -11.37 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.15 Total: 17.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.78 -7.22 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062850367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.779 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds